View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19598_low_40 (Length: 272)
Name: NF19598_low_40
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 39428349 - 39428594
Alignment:
| Q |
13 |
ataaataaagtctgtaatattattgtttttcgtaaaactaaataaattatgtaaaatgtttttcttcttaaaaagccaaaatctattaatgatataatta |
112 |
Q |
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| T |
39428349 |
ataaataaagtctgtaatattattgtttttcgtaaaactaaataaattatttaaa-tgtttttcttcttaaaaagccaaaatctattaatgatataatta |
39428447 |
T |
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| Q |
113 |
aacaaacaagatgtaatattattgttagaatttgtacttccctcaaaaacaagtacttgaac-ttttattaggatctaattcaactacagaattgaaatt |
211 |
Q |
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| T |
39428448 |
aacaagcaagatgtaatattattgttagaatttgtacttccctcaaaaacaagtacttgaactttttattaggatctaattcaactacagaattgaaatt |
39428547 |
T |
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| Q |
212 |
atcaactcatttgatgaaagttgtatgtcactaataatcatcaaagt |
258 |
Q |
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| T |
39428548 |
atcaactcatatgatgaaagttgtatgtcactaataatcatcaaagt |
39428594 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 160
Target Start/End: Complemental strand, 6249948 - 6249858
Alignment:
| Q |
69 |
tgtttttcttcttaaaaagccaaaatctattaatgatataattaaacaaacaagatgtaatattattgttagaatttgtacttccctcaaaa |
160 |
Q |
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| T |
6249948 |
tgtttttcttgtgaacaaaccaaaatatat-aatgatataaataaacgcacaagatgtaacactattattagaatgtgtacttccctaaaaa |
6249858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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