View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19598_low_43 (Length: 260)

Name: NF19598_low_43
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19598_low_43
NF19598_low_43
[»] chr4 (23 HSPs)
chr4 (1-260)||(21683348-21683607)
chr4 (1-55)||(30338667-30338720)
chr4 (63-104)||(2996627-2996668)
chr4 (53-101)||(7730644-7730692)
chr4 (61-104)||(27725266-27725309)
chr4 (1-55)||(54325112-54325165)
chr4 (1-42)||(3155545-3155586)
chr4 (1-38)||(6364091-6364128)
chr4 (9-42)||(17884018-17884051)
chr4 (1-38)||(21593102-21593139)
chr4 (1-38)||(24929435-24929472)
chr4 (1-42)||(26520316-26520357)
chr4 (75-104)||(27123327-27123356)
chr4 (1-30)||(45128409-45128438)
chr4 (10-43)||(47800581-47800614)
chr4 (1-38)||(51044550-51044587)
chr4 (1-38)||(54277405-54277442)
chr4 (61-101)||(6987719-6987759)
chr4 (2-38)||(20936093-20936129)
chr4 (2-42)||(30770826-30770866)
chr4 (63-95)||(32071922-32071954)
chr4 (61-101)||(41097234-41097274)
chr4 (1-41)||(54575676-54575716)
[»] chr2 (14 HSPs)
chr2 (179-257)||(40412003-40412081)
chr2 (59-101)||(1742010-1742052)
chr2 (61-101)||(4550799-4550839)
chr2 (65-100)||(9878661-9878696)
chr2 (53-104)||(28803505-28803556)
chr2 (1-55)||(14277968-14278022)
chr2 (1-42)||(5133714-5133755)
chr2 (1-38)||(12215749-12215786)
chr2 (61-94)||(15377818-15377851)
chr2 (1-38)||(37033986-37034023)
chr2 (1-42)||(39567845-39567886)
chr2 (64-104)||(938485-938525)
chr2 (1-29)||(26522724-26522752)
chr2 (63-103)||(34652012-34652052)
[»] chr8 (12 HSPs)
chr8 (61-104)||(30987966-30988009)
chr8 (1-38)||(14482144-14482181)
chr8 (1-42)||(26215438-26215479)
chr8 (1-38)||(39392752-39392789)
chr8 (64-104)||(31875570-31875610)
chr8 (53-104)||(31915268-31915319)
chr8 (1-42)||(4558740-4558781)
chr8 (61-102)||(29168642-29168683)
chr8 (9-42)||(32976367-32976400)
chr8 (1-42)||(37353336-37353376)
chr8 (9-54)||(39866812-39866857)
chr8 (1-38)||(42597343-42597380)
[»] chr1 (19 HSPs)
chr1 (61-102)||(17631079-17631120)
chr1 (1-42)||(6976890-6976931)
chr1 (1-42)||(38578469-38578510)
chr1 (1-38)||(45999379-45999416)
chr1 (1-41)||(172665-172705)
chr1 (2-38)||(4276727-4276763)
chr1 (1-41)||(7028234-7028274)
chr1 (63-99)||(17628653-17628689)
chr1 (1-40)||(2462909-2462948)
chr1 (63-102)||(19412574-19412613)
chr1 (9-42)||(4549816-4549849)
chr1 (2-55)||(5756761-5756813)
chr1 (2-55)||(6074417-6074469)
chr1 (66-99)||(45327637-45327670)
chr1 (1-42)||(49557083-49557124)
chr1 (1-38)||(50319234-50319271)
chr1 (4-40)||(14630057-14630093)
chr1 (65-101)||(15579538-15579574)
chr1 (10-38)||(44936681-44936709)
[»] chr5 (19 HSPs)
chr5 (53-101)||(38047857-38047905)
chr5 (3-42)||(7853602-7853641)
chr5 (63-101)||(40499704-40499742)
chr5 (1-42)||(6593242-6593283)
chr5 (63-100)||(11457152-11457189)
chr5 (64-101)||(32172708-32172745)
chr5 (1-38)||(37063165-37063202)
chr5 (11-54)||(27105998-27106041)
chr5 (63-101)||(11700356-11700394)
chr5 (1-55)||(28586841-28586894)
chr5 (1-38)||(7096218-7096255)
chr5 (5-38)||(10303747-10303780)
chr5 (9-42)||(10363700-10363733)
chr5 (1-42)||(11835219-11835260)
chr5 (1-38)||(12407752-12407789)
chr5 (1-38)||(34975320-34975357)
chr5 (5-38)||(35095874-35095907)
chr5 (1-30)||(36638688-36638717)
chr5 (65-101)||(10152390-10152426)
[»] chr6 (14 HSPs)
chr6 (63-101)||(32917251-32917289)
chr6 (1-42)||(8349751-8349792)
chr6 (1-40)||(507162-507201)
chr6 (1-36)||(7354146-7354181)
chr6 (61-104)||(32171358-32171401)
chr6 (65-104)||(34939569-34939608)
chr6 (63-101)||(31338030-31338068)
chr6 (65-106)||(740859-740900)
chr6 (9-42)||(1402946-1402979)
chr6 (75-104)||(2460126-2460155)
chr6 (1-38)||(29269838-29269875)
chr6 (1-54)||(31964671-31964724)
chr6 (65-101)||(10616519-10616555)
chr6 (69-101)||(34404600-34404632)
[»] chr7 (14 HSPs)
chr7 (1-42)||(43152989-43153030)
chr7 (61-104)||(13960698-13960741)
chr7 (61-104)||(47427278-47427321)
chr7 (63-101)||(28340398-28340436)
chr7 (65-103)||(33645937-33645975)
chr7 (1-38)||(1417206-1417243)
chr7 (1-38)||(28178911-28178948)
chr7 (63-96)||(29290387-29290420)
chr7 (1-38)||(30496646-30496683)
chr7 (63-104)||(36598331-36598372)
chr7 (63-100)||(44686984-44687021)
chr7 (64-96)||(941595-941627)
chr7 (1-37)||(2727452-2727488)
chr7 (7-55)||(2999139-2999187)
[»] chr3 (17 HSPs)
chr3 (1-42)||(2128338-2128379)
chr3 (65-101)||(37273190-37273226)
chr3 (61-104)||(25182962-25183005)
chr3 (4-42)||(15304434-15304472)
chr3 (1-55)||(20192681-20192734)
chr3 (1-39)||(33120028-33120066)
chr3 (63-101)||(49772646-49772684)
chr3 (1-38)||(1395613-1395650)
chr3 (63-104)||(20192581-20192622)
chr3 (1-38)||(33882970-33883007)
chr3 (1-42)||(42809243-42809284)
chr3 (2-38)||(905061-905097)
chr3 (68-104)||(1810036-1810072)
chr3 (10-42)||(10101563-10101595)
chr3 (10-42)||(10212488-10212520)
chr3 (1-41)||(25183076-25183116)
chr3 (3-55)||(49586991-49587042)
[»] scaffold0590 (1 HSPs)
scaffold0590 (1-38)||(1165-1202)
[»] scaffold0275 (1 HSPs)
scaffold0275 (1-38)||(2773-2810)
[»] scaffold0147 (1 HSPs)
scaffold0147 (65-101)||(12682-12718)


Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 21683607 - 21683348
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagttaaaacagttttcatatcctagatagcttatggacttgtcataagttgtttccataagctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21683607 tgtataaactatttctataacaaaagataagataaagttaaaacagttttcatatcctagatagcttatggacttgtcataagttgttttcataagctct 21683508  T
Q  101 ctcacaattagtataacaagtgcttttctagtagataaatcataatattaacatgctaacaataggaagatagaacattaaaggatacaatttggccaac 200  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21683507 ctcacaaatggtataacaagtgcttttctagtagataaatcataatattaacatgctaacaataggaagatagaacattaaaggatacaatttggccaac 21683408  T
Q  201 acatgttgttatgatagctagaagtgaaagaatggttccaacaaaattgagctgaaggtc 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21683407 acatgttgttatgatagctagaagtgaaagaatggttccaacaaaattgagctgaaggtc 21683348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 30338720 - 30338667
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagttaaaacagttttcatat 55  Q
    |||||||||||||||||||||||||||||  |||||||| |||| ||||||||||    
T  30338720 tgtataaactatttctataacaaaagatagaataaagtt-aaactgttttcatat 30338667  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 2996627 - 2996668
Alignment:
Q  63 agcttatggacttgtcataagttgtttccataagctctctca 104  Q
    ||||||||||| ||||||||||||||| ||||||||||||||    
T  2996627 agcttatggacatgtcataagttgttttcataagctctctca 2996668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 7730644 - 7730692
Alignment:
Q  53 tatcctagatagcttatggacttgtcataagttgtttccataagctctc 101  Q
    |||||| || ||||||||||| ||||||||||||||||| |||||||||    
T  7730644 tatcctggagagcttatggacatgtcataagttgtttccttaagctctc 7730692  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 27725266 - 27725309
Alignment:
Q  61 atagcttatggacttgtcataagttgtttccataagctctctca 104  Q
    |||| |||||||| ||||||||||| ||||||||||||||||||    
T  27725266 atagtttatggacatgtcataagttatttccataagctctctca 27725309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 54325165 - 54325112
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagttaaaacagttttcatat 55  Q
    |||||||||||||||||| ||||||||||| |||||| | |||| ||||||||||    
T  54325165 tgtataaactatttctattacaaaagataaaataaag-tcaaactgttttcatat 54325112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3155545 - 3155586
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagttaaa 42  Q
    ||||||| ||||||||||| |||||||||| |||||||||||    
T  3155545 tgtataagctatttctatagcaaaagataaaataaagttaaa 3155586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 6364091 - 6364128
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagt 38  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  6364091 tgtataagctatttctataacaaaagataaaataaagt 6364128  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 17884018 - 17884051
Alignment:
Q  9 ctatttctataacaaaagataagataaagttaaa 42  Q
    |||||||||||||||||||||| |||||||||||    
T  17884018 ctatttctataacaaaagataaaataaagttaaa 17884051  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 21593139 - 21593102
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagt 38  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  21593139 tgtataaactatttctataactaaagataaaataaagt 21593102  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 24929435 - 24929472
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagt 38  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  24929435 tgtatgaactatttctataacaaaagataaaataaagt 24929472  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 26520357 - 26520316
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagttaaa 42  Q
    |||||||||| ||||||||||||||||| | |||||||||||    
T  26520357 tgtataaactgtttctataacaaaagatgaaataaagttaaa 26520316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 104
Target Start/End: Complemental strand, 27123356 - 27123327
Alignment:
Q  75 tgtcataagttgtttccataagctctctca 104  Q
    ||||||||||||||||||||||||||||||    
T  27123356 tgtcataagttgtttccataagctctctca 27123327  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 45128438 - 45128409
Alignment:
Q  1 tgtataaactatttctataacaaaagataa 30  Q
    ||||||||||||||||||||||||||||||    
T  45128438 tgtataaactatttctataacaaaagataa 45128409  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 47800581 - 47800614
Alignment:
Q  10 tatttctataacaaaagataagataaagttaaaa 43  Q
    ||||||||||||||||||||| ||||||||||||    
T  47800581 tatttctataacaaaagataaaataaagttaaaa 47800614  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 51044587 - 51044550
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagt 38  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  51044587 tgtataagctatttctataacaaaagataaaataaagt 51044550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 54277442 - 54277405
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagt 38  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  54277442 tgtataaactacttctataacaaaagataaaataaagt 54277405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 6987759 - 6987719
Alignment:
Q  61 atagcttatggacttgtcataagttgtttccataagctctc 101  Q
    |||| |||||||| ||||||||||||| |||||||||||||    
T  6987759 atagtttatggacatgtcataagttgtatccataagctctc 6987719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 20936129 - 20936093
Alignment:
Q  2 gtataaactatttctataacaaaagataagataaagt 38  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  20936129 gtatagactatttctataacaaaagataaaataaagt 20936093  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 30770826 - 30770866
Alignment:
Q  2 gtataaactatttctataacaaaagataagataaagttaaa 42  Q
    ||||||||||||| ||||| ||||||||| |||||||||||    
T  30770826 gtataaactatttttataataaaagataaaataaagttaaa 30770866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 95
Target Start/End: Original strand, 32071922 - 32071954
Alignment:
Q  63 agcttatggacttgtcataagttgtttccataa 95  Q
    ||||||||||| |||||||||||||||||||||    
T  32071922 agcttatggacgtgtcataagttgtttccataa 32071954  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 41097274 - 41097234
Alignment:
Q  61 atagcttatggacttgtcataagttgtttccataagctctc 101  Q
    ||||||||||||| |||||| ||||||||| ||||||||||    
T  41097274 atagcttatggacatgtcattagttgtttctataagctctc 41097234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 54575716 - 54575676
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagttaa 41  Q
    |||||||||| ||||||||||||||||||| | ||||||||    
T  54575716 tgtataaactttttctataacaaaagataaaacaaagttaa 54575676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 40412003 - 40412081
Alignment:
Q  179 taaaggatacaatttggccaacacatgttgttatgatagctagaagtgaaagaatggttccaacaaaattgagctgaag 257  Q
    |||||||||||||||||| |||||||||||||||||| |||||||| |||| ||||||||| ||||||||||| |||||    
T  40412003 taaaggatacaatttggctaacacatgttgttatgattgctagaagggaaataatggttcccacaaaattgagttgaag 40412081  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 1742052 - 1742010
Alignment:
Q  59 agatagcttatggacttgtcataagttgtttccataagctctc 101  Q
    |||||||||||| || |||||||||||||||||||||||||||    
T  1742052 agatagcttatgcacatgtcataagttgtttccataagctctc 1742010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 4550799 - 4550839
Alignment:
Q  61 atagcttatggacttgtcataagttgtttccataagctctc 101  Q
    |||||||||| || |||||||||||||||||||||||||||    
T  4550799 atagcttatgaacatgtcataagttgtttccataagctctc 4550839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 100
Target Start/End: Complemental strand, 9878696 - 9878661
Alignment:
Q  65 cttatggacttgtcataagttgtttccataagctct 100  Q
    ||||||||| ||||||||||||||||||||||||||    
T  9878696 cttatggacatgtcataagttgtttccataagctct 9878661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 28803556 - 28803505
Alignment:
Q  53 tatcctagatagcttatggacttgtcataagttgtttccataagctctctca 104  Q
    |||||| || ||||||||||| |||||||||||||||||||| | |||||||    
T  28803556 tatcctggagagcttatggacatgtcataagttgtttccatatgttctctca 28803505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 14278022 - 14277968
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagttaaaacagttttcatat 55  Q
    ||||||||||||||||||||| ||| || | ||||||| ||||| ||||||||||    
T  14278022 tgtataaactatttctataactaaacattaaataaagtcaaaactgttttcatat 14277968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 5133714 - 5133755
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagttaaa 42  Q
    ||||||| |||||||||||||||||||||| |||||| ||||    
T  5133714 tgtataagctatttctataacaaaagataaaataaagataaa 5133755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12215749 - 12215786
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagt 38  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  12215749 tgtataaactatttctacaacaaaagataaaataaagt 12215786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 15377818 - 15377851
Alignment:
Q  61 atagcttatggacttgtcataagttgtttccata 94  Q
    ||||||||||||| ||||||||||||||||||||    
T  15377818 atagcttatggacgtgtcataagttgtttccata 15377851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 37033986 - 37034023
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagt 38  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  37033986 tgtataaactatttctataaaaaaagataaaataaagt 37034023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 39567845 - 39567886
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagttaaa 42  Q
    |||||||  ||||||||||||||||||||| |||||||||||    
T  39567845 tgtataagatatttctataacaaaagataaaataaagttaaa 39567886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 938525 - 938485
Alignment:
Q  64 gcttatggacttgtcataagttgtttccataagctctctca 104  Q
    ||||||||| ||||||||||||  |||||||||||||||||    
T  938525 gcttatggatttgtcataagtttcttccataagctctctca 938485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 26522752 - 26522724
Alignment:
Q  1 tgtataaactatttctataacaaaagata 29  Q
    |||||||||||||||||||||||||||||    
T  26522752 tgtataaactatttctataacaaaagata 26522724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 34652052 - 34652012
Alignment:
Q  63 agcttatggacttgtcataagttgtttccataagctctctc 103  Q
    ||||||||||| |||||||||||||||| ||||||| ||||    
T  34652052 agcttatggacatgtcataagttgtttctataagctttctc 34652012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 30988009 - 30987966
Alignment:
Q  61 atagcttatggacttgtcataagttgtttccataagctctctca 104  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  30988009 atagcttatggacatgtcataagttgtttccataagctctctca 30987966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 14482144 - 14482181
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagt 38  Q
    |||||||||||||||||||||||||||||| |||||||    
T  14482144 tgtataaactatttctataacaaaagataaaataaagt 14482181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 26215438 - 26215479
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagttaaa 42  Q
    ||||||| |||||||||||||||||||||| |||||||||||    
T  26215438 tgtataagctatttctataacaaaagataaaataaagttaaa 26215479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 39392789 - 39392752
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagt 38  Q
    |||||||||||||||||||||||||||||| |||||||    
T  39392789 tgtataaactatttctataacaaaagataaaataaagt 39392752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 31875610 - 31875570
Alignment:
Q  64 gcttatggacttgtcataagttgtttccataagctctctca 104  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  31875610 gcttatggacatgtcataagttgtttccataagctttctca 31875570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 31915319 - 31915268
Alignment:
Q  53 tatcctagatagcttatggacttgtcataagttgtttccataagctctctca 104  Q
    |||||| || |||||||||||||||||||||||||||  ||||||| |||||    
T  31915319 tatcctggagagcttatggacttgtcataagttgtttgtataagctttctca 31915268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4558740 - 4558781
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagttaaa 42  Q
    ||||||| |||||||||||| ||||||||| |||||||||||    
T  4558740 tgtataagctatttctataataaaagataaaataaagttaaa 4558781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 29168683 - 29168642
Alignment:
Q  61 atagcttatggacttgtcataagttgtttccataagctctct 102  Q
    ||||||||||||| ||||||||| ||||| ||||||||||||    
T  29168683 atagcttatggacatgtcataagctgttttcataagctctct 29168642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 32976367 - 32976400
Alignment:
Q  9 ctatttctataacaaaagataagataaagttaaa 42  Q
    |||||||||||||||||||||| |||||||||||    
T  32976367 ctatttctataacaaaagataaaataaagttaaa 32976400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 37353376 - 37353336
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagttaaa 42  Q
    |||| ||||||||||||||||||||||||| |||||||||||    
T  37353376 tgtacaaactatttctataacaaaagataa-ataaagttaaa 37353336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 39866857 - 39866812
Alignment:
Q  9 ctatttctataacaaaagataagataaagttaaaacagttttcata 54  Q
    |||| ||||||||||||||||| ||||||| ||||| |||||||||    
T  39866857 ctatctctataacaaaagataaaataaagtcaaaactgttttcata 39866812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 42597343 - 42597380
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagt 38  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  42597343 tgtataagctatttctataacaaaagataaaataaagt 42597380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 17631120 - 17631079
Alignment:
Q  61 atagcttatggacttgtcataagttgtttccataagctctct 102  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  17631120 atagcttatggacatgtcataagttgtttccataagctctct 17631079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 6976890 - 6976931
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagttaaa 42  Q
    |||||||  |||||||||||||||||||||||||||||||||    
T  6976890 tgtataagatatttctataacaaaagataagataaagttaaa 6976931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 38578469 - 38578510
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagttaaa 42  Q
    ||||||| |||||||||||||||||||||| |||||||||||    
T  38578469 tgtataagctatttctataacaaaagataacataaagttaaa 38578510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 45999416 - 45999379
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagt 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  45999416 tgtataagctatttctataacaaaagataagataaagt 45999379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 172705 - 172665
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagttaa 41  Q
    ||||||| |||||||||||||||||||||| ||||||||||    
T  172705 tgtataagctatttctataacaaaagataacataaagttaa 172665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 4276763 - 4276727
Alignment:
Q  2 gtataaactatttctataacaaaagataagataaagt 38  Q
    ||||||||||||||||||||||||||||| |||||||    
T  4276763 gtataaactatttctataacaaaagataatataaagt 4276727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 7028234 - 7028274
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagttaa 41  Q
    ||||||||||||||||||| |||||||||| ||||||||||    
T  7028234 tgtataaactatttctatagcaaaagataaaataaagttaa 7028274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 17628653 - 17628689
Alignment:
Q  63 agcttatggacttgtcataagttgtttccataagctc 99  Q
    ||||||||||| |||||||||||||||||||||||||    
T  17628653 agcttatggacatgtcataagttgtttccataagctc 17628689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 2462909 - 2462948
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagtta 40  Q
    ||||||| ||||||||||||||||| ||||||||||||||    
T  2462909 tgtataagctatttctataacaaaatataagataaagtta 2462948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 102
Target Start/End: Complemental strand, 19412613 - 19412574
Alignment:
Q  63 agcttatggacttgtcataagttgtttccataagctctct 102  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  19412613 agcttatggacatgtcataagttgtttccataaactctct 19412574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 4549816 - 4549849
Alignment:
Q  9 ctatttctataacaaaagataagataaagttaaa 42  Q
    |||||||||||||||||||||| |||||||||||    
T  4549816 ctatttctataacaaaagataaaataaagttaaa 4549849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 5756813 - 5756761
Alignment:
Q  2 gtataaactatttctataacaaaagataagataaagttaaaacagttttcatat 55  Q
    |||||| |||||||||||||||||||| | |||||||| |||| ||||||||||    
T  5756813 gtataagctatttctataacaaaagatgatataaagtt-aaactgttttcatat 5756761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 6074417 - 6074469
Alignment:
Q  2 gtataaactatttctataacaaaagataagataaagttaaaacagttttcatat 55  Q
    |||||| |||||||||||||||||||| | |||||||| |||| ||||||||||    
T  6074417 gtataagctatttctataacaaaagatgatataaagtt-aaactgttttcatat 6074469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 45327637 - 45327670
Alignment:
Q  66 ttatggacttgtcataagttgtttccataagctc 99  Q
    |||||||| |||||||||||||||||||||||||    
T  45327637 ttatggacatgtcataagttgtttccataagctc 45327670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 49557083 - 49557124
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagttaaa 42  Q
    |||||||  ||||||||||||||||||||| |||||||||||    
T  49557083 tgtataagttatttctataacaaaagataaaataaagttaaa 49557124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 50319234 - 50319271
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagt 38  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  50319234 tgtataagctatttctataacaaaagataaaataaagt 50319271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 14630093 - 14630057
Alignment:
Q  4 ataaactatttctataacaaaagataagataaagtta 40  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  14630093 ataaactatctctataacaaaagataaaataaagtta 14630057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 15579538 - 15579574
Alignment:
Q  65 cttatggacttgtcataagttgtttccataagctctc 101  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  15579538 cttatggacatgtcataagttgtttccacaagctctc 15579574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 44936709 - 44936681
Alignment:
Q  10 tatttctataacaaaagataagataaagt 38  Q
    |||||||||||||||||||||||||||||    
T  44936709 tatttctataacaaaagataagataaagt 44936681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 38047905 - 38047857
Alignment:
Q  53 tatcctagatagcttatggacttgtcataagttgtttccataagctctc 101  Q
    |||||| || ||||||||||| |||||||||||||||||||||||||||    
T  38047905 tatcctggagagcttatggacatgtcataagttgtttccataagctctc 38047857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 7853602 - 7853641
Alignment:
Q  3 tataaactatttctataacaaaagataagataaagttaaa 42  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  7853602 tataaactatttctataacaaaagataaaataaagttaaa 7853641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 101
Target Start/End: Complemental strand, 40499742 - 40499704
Alignment:
Q  63 agcttatggacttgtcataagttgtttccataagctctc 101  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  40499742 agcttatggacatgtcataagttgtttccataagctctc 40499704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 6593242 - 6593283
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagttaaa 42  Q
    ||||||||| |||||||||||||||||||| |||||||||||    
T  6593242 tgtataaacaatttctataacaaaagataaaataaagttaaa 6593283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 11457152 - 11457189
Alignment:
Q  63 agcttatggacttgtcataagttgtttccataagctct 100  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  11457152 agcttatggacatgtcataagttgtttccataagctct 11457189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 32172708 - 32172745
Alignment:
Q  64 gcttatggacttgtcataagttgtttccataagctctc 101  Q
    |||||||||| |||||||||||||||||||||||||||    
T  32172708 gcttatggacatgtcataagttgtttccataagctctc 32172745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 37063202 - 37063165
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagt 38  Q
    |||||||||||||||||||||||||||||| |||||||    
T  37063202 tgtataaactatttctataacaaaagataaaataaagt 37063165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 27106041 - 27105998
Alignment:
Q  11 atttctataacaaaagataagataaagttaaaacagttttcata 54  Q
    |||||||||||||||||||| ||||||||||||  |||||||||    
T  27106041 atttctataacaaaagataaaataaagttaaaagcgttttcata 27105998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 101
Target Start/End: Complemental strand, 11700394 - 11700356
Alignment:
Q  63 agcttatggacttgtcataagttgtttccataagctctc 101  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  11700394 agcttatggacatgtcataagttgtttccataaactctc 11700356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 28586894 - 28586841
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagttaaaacagttttcatat 55  Q
    |||||| ||||||||||||||||||||||| |||||| | |||| ||||||||||    
T  28586894 tgtatacactatttctataacaaaagataaaataaag-tcaaactgttttcatat 28586841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7096255 - 7096218
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagt 38  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  7096255 tgtataagctatttctataacaaaagataaaataaagt 7096218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 10303747 - 10303780
Alignment:
Q  5 taaactatttctataacaaaagataagataaagt 38  Q
    |||||||||||||||||||||||||| |||||||    
T  10303747 taaactatttctataacaaaagataaaataaagt 10303780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 10363700 - 10363733
Alignment:
Q  9 ctatttctataacaaaagataagataaagttaaa 42  Q
    |||||||||||||||||||||| |||||||||||    
T  10363700 ctatttctataacaaaagataaaataaagttaaa 10363733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 11835219 - 11835260
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagttaaa 42  Q
    ||||||||| |||| ||||||||||||||| |||||||||||    
T  11835219 tgtataaaccatttttataacaaaagataaaataaagttaaa 11835260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 12407789 - 12407752
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagt 38  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  12407789 tgtataagctatttctataacaaaagataaaataaagt 12407752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 34975320 - 34975357
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagt 38  Q
    |||||||||||||||||||||||||||| | |||||||    
T  34975320 tgtataaactatttctataacaaaagatgaaataaagt 34975357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 35095907 - 35095874
Alignment:
Q  5 taaactatttctataacaaaagataagataaagt 38  Q
    |||||||||||||||||||||||||| |||||||    
T  35095907 taaactatttctataacaaaagataaaataaagt 35095874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 36638688 - 36638717
Alignment:
Q  1 tgtataaactatttctataacaaaagataa 30  Q
    ||||||||||||||||||||||||||||||    
T  36638688 tgtataaactatttctataacaaaagataa 36638717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 10152390 - 10152426
Alignment:
Q  65 cttatggacttgtcataagttgtttccataagctctc 101  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  10152390 cttatggacatgtcataagttgttttcataagctctc 10152426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 101
Target Start/End: Original strand, 32917251 - 32917289
Alignment:
Q  63 agcttatggacttgtcataagttgtttccataagctctc 101  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  32917251 agcttatggacatgtcataagttgtttccataagctctc 32917289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8349792 - 8349751
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagttaaa 42  Q
    |||||||||||||||| ||||||||||||| |||||||||||    
T  8349792 tgtataaactatttctctaacaaaagataaaataaagttaaa 8349751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 507162 - 507201
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagtta 40  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  507162 tgtataaattatttctataacaaaagataaaataaagtta 507201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 7354146 - 7354181
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaa 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  7354146 tgtataaactatttctataacaaaagataaaataaa 7354181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 32171401 - 32171358
Alignment:
Q  61 atagcttatggacttgtcataagttgtttccataagctctctca 104  Q
    ||||||| ||||||||||||||| ||||| ||||||||||||||    
T  32171401 atagcttctggacttgtcataagctgttttcataagctctctca 32171358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 104
Target Start/End: Original strand, 34939569 - 34939608
Alignment:
Q  65 cttatggacttgtcataagttgtttccataagctctctca 104  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  34939569 cttacggacgtgtcataagttgtttccataagctctctca 34939608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 101
Target Start/End: Original strand, 31338030 - 31338068
Alignment:
Q  63 agcttatggacttgtcataagttgtttccataagctctc 101  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  31338030 agcttatggacatgtcataagttgttttcataagctctc 31338068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 740900 - 740859
Alignment:
Q  65 cttatggacttgtcataagttgtttccataagctctctcaca 106  Q
    |||||| || |||||||||||||||||| |||||||||||||    
T  740900 cttatgaacatgtcataagttgtttccacaagctctctcaca 740859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 1402946 - 1402979
Alignment:
Q  9 ctatttctataacaaaagataagataaagttaaa 42  Q
    |||||||||||||||||||||| |||||||||||    
T  1402946 ctatttctataacaaaagataaaataaagttaaa 1402979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 104
Target Start/End: Complemental strand, 2460155 - 2460126
Alignment:
Q  75 tgtcataagttgtttccataagctctctca 104  Q
    ||||||||||||||||||||||||||||||    
T  2460155 tgtcataagttgtttccataagctctctca 2460126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 29269838 - 29269875
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagt 38  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  29269838 tgtataaactatttctataacagaagataaaataaagt 29269875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 31964724 - 31964671
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagttaaaacagttttcata 54  Q
    ||||||||||||| ||| || ||||||||| ||||||| ||||| |||||||||    
T  31964724 tgtataaactattcctacaataaaagataaaataaagtcaaaactgttttcata 31964671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 10616555 - 10616519
Alignment:
Q  65 cttatggacttgtcataagttgtttccataagctctc 101  Q
    |||| |||| |||||||||||||||||||||||||||    
T  10616555 cttacggacatgtcataagttgtttccataagctctc 10616519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 34404600 - 34404632
Alignment:
Q  69 tggacttgtcataagttgtttccataagctctc 101  Q
    ||||| |||||||||||||||||||||||||||    
T  34404600 tggacatgtcataagttgtttccataagctctc 34404632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43153030 - 43152989
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagttaaa 42  Q
    ||||||| |||||||||||||||||||||| |||||||||||    
T  43153030 tgtataagctatttctataacaaaagataaaataaagttaaa 43152989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 13960741 - 13960698
Alignment:
Q  61 atagcttatggacttgtcataagttgtttccataagctctctca 104  Q
    ||||||||||||||||| ||||| ||||| ||||||||||||||    
T  13960741 atagcttatggacttgttataagctgttttcataagctctctca 13960698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 47427321 - 47427278
Alignment:
Q  61 atagcttatggacttgtcataagttgtttccataagctctctca 104  Q
    ||||||||| ||  ||||||||||||||||||||||||||||||    
T  47427321 atagcttatagagatgtcataagttgtttccataagctctctca 47427278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 101
Target Start/End: Complemental strand, 28340436 - 28340398
Alignment:
Q  63 agcttatggacttgtcataagttgtttccataagctctc 101  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  28340436 agcttatggacatgtcataagttgttttcataagctctc 28340398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 33645975 - 33645937
Alignment:
Q  65 cttatggacttgtcataagttgtttccataagctctctc 103  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  33645975 cttatagacatgtcataagttgtttccataagctctctc 33645937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1417206 - 1417243
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagt 38  Q
    |||||||||||||| ||||||||||||||| |||||||    
T  1417206 tgtataaactatttatataacaaaagataaaataaagt 1417243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28178911 - 28178948
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagt 38  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  28178911 tgtataagctatttctataacaaaagataaaataaagt 28178948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 96
Target Start/End: Original strand, 29290387 - 29290420
Alignment:
Q  63 agcttatggacttgtcataagttgtttccataag 96  Q
    ||||||||||| ||||||||||||||||||||||    
T  29290387 agcttatggacatgtcataagttgtttccataag 29290420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30496646 - 30496683
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagt 38  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  30496646 tgtataaactatttctataacaaaatataaaataaagt 30496683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 36598372 - 36598331
Alignment:
Q  63 agcttatggacttgtcataagttgtttccataagctctctca 104  Q
    |||||||| || ||||||||| ||||||||||||||||||||    
T  36598372 agcttatgaacatgtcataagatgtttccataagctctctca 36598331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 44686984 - 44687021
Alignment:
Q  63 agcttatggacttgtcataagttgtttccataagctct 100  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  44686984 agctcatggacatgtcataagttgtttccataagctct 44687021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 96
Target Start/End: Original strand, 941595 - 941627
Alignment:
Q  64 gcttatggacttgtcataagttgtttccataag 96  Q
    |||||||||| ||||||||||||||||||||||    
T  941595 gcttatggacatgtcataagttgtttccataag 941627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2727488 - 2727452
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaag 37  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  2727488 tgtatagactatttctataacaaaagataaaataaag 2727452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 2999139 - 2999187
Alignment:
Q  7 aactatttctataacaaaagataagataaagttaaaacagttttcatat 55  Q
    |||||||||||||||||||||||| ||||||| ||| |  |||||||||    
T  2999139 aactatttctataacaaaagataaaataaagtcaaaccgtttttcatat 2999187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2128379 - 2128338
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagttaaa 42  Q
    ||||||| |||||||||||||||||||||| |||||||||||    
T  2128379 tgtataagctatttctataacaaaagataaaataaagttaaa 2128338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 37273190 - 37273226
Alignment:
Q  65 cttatggacttgtcataagttgtttccataagctctc 101  Q
    ||||||||| |||||||||||||||||||||||||||    
T  37273190 cttatggacatgtcataagttgtttccataagctctc 37273226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 25183005 - 25182962
Alignment:
Q  61 atagcttatggacttgtcataagttgtttccataagctctctca 104  Q
    ||||||||||||  ||||||||||||||| ||||||||||||||    
T  25183005 atagcttatggatatgtcataagttgttttcataagctctctca 25182962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 15304472 - 15304434
Alignment:
Q  4 ataaactatttctataacaaaagataagataaagttaaa 42  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  15304472 ataagctatttctataacaaaagataaaataaagttaaa 15304434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 20192734 - 20192681
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagttaaaacagttttcatat 55  Q
    ||||||| |||||| ||||||||||||||| |||||| | |||||||||||||||    
T  20192734 tgtataagctatttatataacaaaagataaaataaag-tcaaacagttttcatat 20192681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 33120028 - 33120066
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagtt 39  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  33120028 tgtataaactatttctttaacaaaagataatataaagtt 33120066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 101
Target Start/End: Complemental strand, 49772684 - 49772646
Alignment:
Q  63 agcttatggacttgtcataagttgtttccataagctctc 101  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  49772684 agcttatggacatctcataagttgtttccataagctctc 49772646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1395613 - 1395650
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagt 38  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  1395613 tgtataagctatttctataacaaaagataaaataaagt 1395650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 20192622 - 20192581
Alignment:
Q  63 agcttatggacttgtcataagttgtttccataagctctctca 104  Q
    ||||||||||| ||||||||| |||||| |||||||||||||    
T  20192622 agcttatggacatgtcataagctgtttctataagctctctca 20192581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 33882970 - 33883007
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagt 38  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  33882970 tgtataaattatttctataacaaaagataaaataaagt 33883007  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 42809243 - 42809284
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagttaaa 42  Q
    ||||||| |||||||||||||||||||||| ||| |||||||    
T  42809243 tgtataagctatttctataacaaaagataaaatatagttaaa 42809284  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 905097 - 905061
Alignment:
Q  2 gtataaactatttctataacaaaagataagataaagt 38  Q
    |||||| |||||||||||||||||||||| |||||||    
T  905097 gtataagctatttctataacaaaagataaaataaagt 905061  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 1810036 - 1810072
Alignment:
Q  68 atggacttgtcataagttgtttccataagctctctca 104  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  1810036 atggacatgtcataagttgtttccgtaagctctctca 1810072  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 10101595 - 10101563
Alignment:
Q  10 tatttctataacaaaagataagataaagttaaa 42  Q
    ||||||||||||||||||||| |||||||||||    
T  10101595 tatttctataacaaaagataaaataaagttaaa 10101563  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 10212520 - 10212488
Alignment:
Q  10 tatttctataacaaaagataagataaagttaaa 42  Q
    ||||||||||||||||||||| |||||||||||    
T  10212520 tatttctataacaaaagataaaataaagttaaa 10212488  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 25183116 - 25183076
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagttaa 41  Q
    |||||||||||||| ||||||||||||| | ||||||||||    
T  25183116 tgtataaactatttttataacaaaagattaaataaagttaa 25183076  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 49587042 - 49586991
Alignment:
Q  3 tataaactatttctataacaaaagataagataaagttaaaacagttttcatat 55  Q
    ||||| |||||||||||||||||||||| |||||| | |||| ||||||||||    
T  49587042 tataagctatttctataacaaaagataaaataaag-tcaaactgttttcatat 49586991  T

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Target: scaffold0590 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1202 - 1165
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagt 38  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  1202 tgtataagctatttctataacaaaagataaaataaagt 1165  T

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Target: scaffold0275 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2773 - 2810
Alignment:
Q  1 tgtataaactatttctataacaaaagataagataaagt 38  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  2773 tgtataagctatttctataacaaaagataaaataaagt 2810  T

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Target: scaffold0147 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 12718 - 12682
Alignment:
Q  65 cttatggacttgtcataagttgtttccataagctctc 101  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  12718 cttatggacatgtcataagttgtttccataaggtctc 12682  T

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