View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19598_low_45 (Length: 253)
Name: NF19598_low_45
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 33238445 - 33238691
Alignment:
| Q |
1 |
gcactcccttttaggaaacaggatggttatgatcttactcaaaaatggaagtggttttgggatgttacaaagagagtgaatcttggaatacaggtaattt |
100 |
Q |
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| T |
33238445 |
gcactcccttttaggaaacaggatggctatgatcttactcaaaaatggaagtggttttgggatgttacaaagagagtgaatcttggaatacaggtaattt |
33238544 |
T |
|
| Q |
101 |
aatacaaaattttgttgtacacatacacataaatataagtttattataagatctatgacaaactc--atgaaaaact--tagtgattct--tatatatgt |
194 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||| |
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| T |
33238545 |
aatacaacattttgttgtacacatacacataaatataagtttattataagatctatgacaaactcatatgaaaaacttatagtgattcttatatatatgt |
33238644 |
T |
|
| Q |
195 |
ttcctatgtgagttactaggtgaaaggagacagatacatattcatct |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33238645 |
ttcctatgtgagttactaggtgaaaggagacagatacatattcatct |
33238691 |
T |
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