View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19598_low_46 (Length: 252)

Name: NF19598_low_46
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19598_low_46
NF19598_low_46
[»] chr7 (3 HSPs)
chr7 (4-237)||(35450907-35451140)
chr7 (51-111)||(25635870-25635930)
chr7 (29-72)||(24118411-24118454)
[»] chr8 (2 HSPs)
chr8 (52-144)||(13402226-13402318)
chr8 (48-80)||(23489967-23489999)
[»] chr1 (3 HSPs)
chr1 (51-92)||(9457757-9457798)
chr1 (51-92)||(9461854-9461895)
chr1 (28-81)||(26828587-26828640)
[»] chr6 (2 HSPs)
chr6 (23-75)||(14289828-14289880)
chr6 (31-71)||(9771913-9771953)
[»] chr3 (1 HSPs)
chr3 (28-144)||(32104130-32104245)
[»] chr2 (1 HSPs)
chr2 (23-75)||(42237563-42237615)
[»] scaffold0472 (1 HSPs)
scaffold0472 (28-73)||(11808-11853)
[»] chr4 (1 HSPs)
chr4 (51-92)||(25968142-25968183)


Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 35451140 - 35450907
Alignment:
Q  4 taacatttgtcacttaaaaaatacaaataattttaataaaattcgtacaatgttgtgattaattcacaccgcaacaatggcaatccgtaacaaccgaaat 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35451140 taacatttgtcacttaaaaaatacaaataattttaataaaattcgtacaatgttgtgattaattcacaccgcaacaatggcaatccgtaacaaccgaaat 35451041  T
Q  104 cacaaaattcttaacgcgacctcgagcgttatttaaaacctatttcattaaggtgtactgatttatttagtattttgataaaaatgaaaaatttgtatgg 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35451040 cacaaaattcttaacgcgacctcgagcgttatttaaaacctatttcattaaggtgtactgatttatttagtattttgataaaaatgaaaaatttgtatgg 35450941  T
Q  204 atttagcaattggtatgatgattaggctataagt 237  Q
    ||||||||||||||||||||||||||||||||||    
T  35450940 atttagcaattggtatgatgattaggctataagt 35450907  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 25635930 - 25635870
Alignment:
Q  51 caatgttgtgattaattcacaccgcaacaatggcaatccgtaacaaccgaaatcacaaaat 111  Q
    ||||||||||||||||||||||||||||||  ||||||||||||| |||||||| ||||||    
T  25635930 caatgttgtgattaattcacaccgcaacaaccgcaatccgtaacagccgaaatcgcaaaat 25635870  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 24118411 - 24118454
Alignment:
Q  29 aataattttaataaaattcgtacaatgttgtgattaattcacac 72  Q
    |||||||||||||| ||| ||||||||||||||| |||||||||    
T  24118411 aataattttaataagatttgtacaatgttgtgatgaattcacac 24118454  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 144
Target Start/End: Original strand, 13402226 - 13402318
Alignment:
Q  52 aatgttgtgattaattcacaccgcaacaatggcaatccgtaacaaccgaaatcacaaaattctta-acgcgacctcgagcgttatttaaaacct 144  Q
    |||||||||||||||||||||||| ||||  ||||||||||||| | |||||||| ||| ||||| |||||||| ||| |||||||| ||||||    
T  13402226 aatgttgtgattaattcacaccgcgacaaccgcaatccgtaacagctgaaatcacgaaa-tcttatacgcgaccacgaccgttatttgaaacct 13402318  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 23489999 - 23489967
Alignment:
Q  48 gtacaatgttgtgattaattcacaccgcaacaa 80  Q
    |||||||||||||||||||||||||||||||||    
T  23489999 gtacaatgttgtgattaattcacaccgcaacaa 23489967  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 9457757 - 9457798
Alignment:
Q  51 caatgttgtgattaattcacaccgcaacaatggcaatccgta 92  Q
    ||||||||||||||||||||||||||||||  ||||||||||    
T  9457757 caatgttgtgattaattcacaccgcaacaaccgcaatccgta 9457798  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 9461854 - 9461895
Alignment:
Q  51 caatgttgtgattaattcacaccgcaacaatggcaatccgta 92  Q
    ||||||||||||||||||||||||||||||  ||||||||||    
T  9461854 caatgttgtgattaattcacaccgcaacaaccgcaatccgta 9461895  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 26828587 - 26828640
Alignment:
Q  28 aaataattttaataaaattcgtacaatgttgtgattaattcacaccgcaacaat 81  Q
    |||||| |||||||||||| || ||||||||||||||||| ||||||| |||||    
T  26828587 aaataagtttaataaaatttgtgcaatgttgtgattaatttacaccgcgacaat 26828640  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 14289880 - 14289828
Alignment:
Q  23 aatacaaataattttaataaaattcgtacaatgttgtgattaattcacaccgc 75  Q
    |||| ||||||||||||||| |||  ||||||||| |||||||||||||||||    
T  14289880 aatataaataattttaataacatttatacaatgttttgattaattcacaccgc 14289828  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 9771913 - 9771953
Alignment:
Q  31 taattttaataaaattcgtacaatgttgtgattaattcaca 71  Q
    |||||||||||| ||| || |||||||||||||||||||||    
T  9771913 taattttaataacatttgtgcaatgttgtgattaattcaca 9771953  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 144
Target Start/End: Complemental strand, 32104245 - 32104130
Alignment:
Q  28 aaataattttaataaaattcgtacaatgttgtgattaattcacaccgcaacaatggcaatccgtaacaaccgaaatcacaaaattcttaacgcgacctcg 127  Q
    |||||||||||||||  || || | ||||||||||||||| ||||||| || |   |||||||||| | | ||||||||||||| ||| || | ||||||    
T  32104245 aaataattttaataacgtttgtgccatgttgtgattaatttacaccgcgactacaacaatccgtaatagctgaaatcacaaaatcctt-acacaacctcg 32104147  T
Q  128 agcgttatttaaaacct 144  Q
    |||  ||||||||||||    
T  32104146 agcactatttaaaacct 32104130  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 42237615 - 42237563
Alignment:
Q  23 aatacaaataattttaataaaattcgtacaatgttgtgattaattcacaccgc 75  Q
    |||| ||||||||||||||| ||| || |||||||||| ||||||||||||||    
T  42237615 aatataaataattttaataagatttgtgcaatgttgtggttaattcacaccgc 42237563  T

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Target: scaffold0472 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 11853 - 11808
Alignment:
Q  28 aaataattttaataaaattcgtacaatgttgtgattaattcacacc 73  Q
    ||||||||||||||| ||| || |||||||||| ||||||||||||    
T  11853 aaataattttaataagatttgtgcaatgttgtggttaattcacacc 11808  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 25968142 - 25968183
Alignment:
Q  51 caatgttgtgattaattcacaccgcaacaatggcaatccgta 92  Q
    ||||||||||||||||||||||||| ||||  ||||||||||    
T  25968142 caatgttgtgattaattcacaccgcgacaaccgcaatccgta 25968183  T

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