View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19598_low_49 (Length: 250)

Name: NF19598_low_49
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19598_low_49
NF19598_low_49
[»] chr5 (4 HSPs)
chr5 (120-250)||(12463384-12463515)
chr5 (18-58)||(12464263-12464303)
chr5 (18-57)||(38923949-38923988)
chr5 (65-102)||(12463538-12463575)
[»] chr2 (3 HSPs)
chr2 (128-241)||(4917464-4917577)
chr2 (29-58)||(4681555-4681584)
chr2 (18-58)||(4916830-4916870)
[»] chr4 (11 HSPs)
chr4 (182-250)||(53920462-53920531)
chr4 (61-102)||(53920561-53920602)
chr4 (18-58)||(53921172-53921212)
chr4 (18-58)||(31913916-31913956)
chr4 (18-58)||(52883757-52883797)
chr4 (19-58)||(44109908-44109947)
chr4 (20-58)||(11009380-11009418)
chr4 (171-236)||(31913408-31913473)
chr4 (18-54)||(8718669-8718705)
chr4 (18-58)||(39121195-39121235)
chr4 (18-58)||(42857586-42857626)
[»] chr8 (3 HSPs)
chr8 (128-184)||(38760131-38760187)
chr8 (18-58)||(29012536-29012576)
chr8 (18-58)||(33099632-33099672)
[»] scaffold0361 (1 HSPs)
scaffold0361 (18-58)||(13909-13949)
[»] chr1 (7 HSPs)
chr1 (18-58)||(19067296-19067336)
chr1 (18-58)||(19115186-19115226)
chr1 (18-58)||(34145679-34145719)
chr1 (28-58)||(2167738-2167768)
chr1 (28-58)||(46614507-46614537)
chr1 (18-58)||(4851386-4851426)
chr1 (18-58)||(26940370-26940410)
[»] chr7 (1 HSPs)
chr7 (18-57)||(32277520-32277559)
[»] chr3 (4 HSPs)
chr3 (28-58)||(24346199-24346229)
chr3 (28-58)||(43884973-43885003)
chr3 (29-58)||(28255205-28255234)
chr3 (18-58)||(50001896-50001936)
[»] chr6 (1 HSPs)
chr6 (18-58)||(567159-567199)


Alignment Details
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 120 - 250
Target Start/End: Complemental strand, 12463515 - 12463384
Alignment:
Q  120 ctattttgcaaaataaacaaaaacgaggaaagggtgggataaggatatatggtggaaagtgaaaacgaaagtagtgttcccc-atctctcttcccacatc 218  Q
    ||||||||||||||||||||||| ||||||| ||||||| |||| ||||| |||||||||| |||| ||||||||||||||| | |||||||||||||||    
T  12463515 ctattttgcaaaataaacaaaaatgaggaaaaggtgggacaagggtatatagtggaaagtggaaacaaaagtagtgttccccgaactctcttcccacatc 12463416  T
Q  219 agcgaagaaaagaaaaagggatgagttccacc 250  Q
    ||||||||||||||||||||||| || |||||    
T  12463415 agcgaagaaaagaaaaagggatgggtcccacc 12463384  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 12464303 - 12464263
Alignment:
Q  18 agaaagataagagaaatagagtagatttgatgtgttgtttg 58  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  12464303 agaaagataagagaaatagaatagatttgatgtgttgtttg 12464263  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 38923988 - 38923949
Alignment:
Q  18 agaaagataagagaaatagagtagatttgatgtgttgttt 57  Q
    ||||||| | ||||||||||||||||||||||||||||||    
T  38923988 agaaagagatgagaaatagagtagatttgatgtgttgttt 38923949  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 12463575 - 12463538
Alignment:
Q  65 gcttagtgagaagaatacaactaatttgcaaaatgctg 102  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  12463575 gcttggtgagaagaatgcaactaatttgcaaaatgctg 12463538  T

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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 241
Target Start/End: Original strand, 4917464 - 4917577
Alignment:
Q  128 caaaataaacaaaaacgaggaaagggtgggataaggatatatggtggaaagtgaaaacgaaagtagtgttcc-ccatctctcttcccacatcagcgaaga 226  Q
    ||||||||||||||| ||||||||||||||| | || ||||| ||||||||||||||  |||| || ||||| |||  ||||||| |||||| |||||||    
T  4917464 caaaataaacaaaaatgaggaaagggtgggacaggggtatatagtggaaagtgaaaa-aaaagcagcgttccaccaaatctcttctcacatctgcgaaga 4917562  T
Q  227 aaagaaaaagggatg 241  Q
    || ||||||||||||    
T  4917563 aatgaaaaagggatg 4917577  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 4681555 - 4681584
Alignment:
Q  29 agaaatagagtagatttgatgtgttgtttg 58  Q
    ||||||||||||||||||||||||||||||    
T  4681555 agaaatagagtagatttgatgtgttgtttg 4681584  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 4916830 - 4916870
Alignment:
Q  18 agaaagataagagaaatagagtagatttgatgtgttgtttg 58  Q
    ||||| ||||||||||||||||||||||||  |||||||||    
T  4916830 agaaatataagagaaatagagtagatttgagatgttgtttg 4916870  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 53920531 - 53920462
Alignment:
Q  182 aaacgaaagtagtgttcccc-atctctcttcccacatcagcgaagaaaagaaaaagggatgagttccacc 250  Q
    |||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||| || |||||    
T  53920531 aaacaaaagtagtgttcccccaactctcttcccacatcagcgaagaaaagaaaaagggatgggtcccacc 53920462  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 53920602 - 53920561
Alignment:
Q  61 aaatgcttagtgagaagaatacaactaatttgcaaaatgctg 102  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  53920602 aaatgcttagtgagaagaatacaactaatttgcaaaatgctg 53920561  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 53921212 - 53921172
Alignment:
Q  18 agaaagataagagaaatagagtagatttgatgtgttgtttg 58  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  53921212 agaaagataagagaaatagagtagatttgatgtgttgtttg 53921172  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 31913956 - 31913916
Alignment:
Q  18 agaaagataagagaaatagagtagatttgatgtgttgtttg 58  Q
    ||||||||||||||||||||||||||||||  |||||||||    
T  31913956 agaaagataagagaaatagagtagatttgagatgttgtttg 31913916  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 52883757 - 52883797
Alignment:
Q  18 agaaagataagagaaatagagtagatttgatgtgttgtttg 58  Q
    |||||||||||||||||||||||||||||| || |||||||    
T  52883757 agaaagataagagaaatagagtagatttgaggtattgtttg 52883797  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 44109908 - 44109947
Alignment:
Q  19 gaaagataagagaaatagagtagatttgatgtgttgtttg 58  Q
    |||||||  |||||||||||||||||||||||||||||||    
T  44109908 gaaagatgtgagaaatagagtagatttgatgtgttgtttg 44109947  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 11009418 - 11009380
Alignment:
Q  20 aaagataagagaaatagagtagatttgatgtgttgtttg 58  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  11009418 aaagataagagaaatagagtagatttgagttgttgtttg 11009380  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 31913473 - 31913408
Alignment:
Q  171 gtggaaagtgaaaacgaaagtagtgttccccatctctcttcccacatcagcgaagaaaagaaaaag 236  Q
    |||||||||| |||  |||| || ||||||||| | ||||| |||||||||||||||| |||||||    
T  31913473 gtggaaagtgcaaaaaaaagcagagttccccatatttcttcgcacatcagcgaagaaaggaaaaag 31913408  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 8718669 - 8718705
Alignment:
Q  18 agaaagataagagaaatagagtagatttgatgtgttg 54  Q
    ||||||||  |||||||||||||||||||||||||||    
T  8718669 agaaagatgtgagaaatagagtagatttgatgtgttg 8718705  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 39121195 - 39121235
Alignment:
Q  18 agaaagataagagaaatagagtagatttgatgtgttgtttg 58  Q
    ||||||||  |||||||||||||||||||||| ||||||||    
T  39121195 agaaagatgtgagaaatagagtagatttgatgggttgtttg 39121235  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 42857586 - 42857626
Alignment:
Q  18 agaaagataagagaaatagagtagatttgatgtgttgtttg 58  Q
    ||||| || |||||||||||||||||||||||| |||||||    
T  42857586 agaaatatgagagaaatagagtagatttgatgtattgtttg 42857626  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 38760131 - 38760187
Alignment:
Q  128 caaaataaacaaaaacgaggaaagggtgggataaggatatatggtggaaagtgaaaa 184  Q
    ||||||||||||||| ||||||||||||||| | || ||||| ||||||||||||||    
T  38760131 caaaataaacaaaaatgaggaaagggtgggacatgggtatatagtggaaagtgaaaa 38760187  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 29012536 - 29012576
Alignment:
Q  18 agaaagataagagaaatagagtagatttgatgtgttgtttg 58  Q
    |||||||||||||||||||||||||||||| ||||| ||||    
T  29012536 agaaagataagagaaatagagtagatttgaggtgttatttg 29012576  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 33099672 - 33099632
Alignment:
Q  18 agaaagataagagaaatagagtagatttgatgtgttgtttg 58  Q
    ||||||| | |||||||||||||||||||||| ||||||||    
T  33099672 agaaagagatgagaaatagagtagatttgatgggttgtttg 33099632  T

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Target: scaffold0361 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 13949 - 13909
Alignment:
Q  18 agaaagataagagaaatagagtagatttgatgtgttgtttg 58  Q
    |||||||||||||||||||||||||||||| || |||||||    
T  13949 agaaagataagagaaatagagtagatttgaggtattgtttg 13909  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 19067296 - 19067336
Alignment:
Q  18 agaaagataagagaaatagagtagatttgatgtgttgtttg 58  Q
    ||||||| | |||||||||||||||||||||||||||||||    
T  19067296 agaaagagatgagaaatagagtagatttgatgtgttgtttg 19067336  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 19115186 - 19115226
Alignment:
Q  18 agaaagataagagaaatagagtagatttgatgtgttgtttg 58  Q
    ||||||| | |||||||||||||||||||||||||||||||    
T  19115186 agaaagagatgagaaatagagtagatttgatgtgttgtttg 19115226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 34145719 - 34145679
Alignment:
Q  18 agaaagataagagaaatagagtagatttgatgtgttgtttg 58  Q
    ||||||||||||||||||||||||||||||  |||||||||    
T  34145719 agaaagataagagaaatagagtagatttgagatgttgtttg 34145679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 58
Target Start/End: Complemental strand, 2167768 - 2167738
Alignment:
Q  28 gagaaatagagtagatttgatgtgttgtttg 58  Q
    |||||||||||||||||||||||||||||||    
T  2167768 gagaaatagagtagatttgatgtgttgtttg 2167738  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 58
Target Start/End: Complemental strand, 46614537 - 46614507
Alignment:
Q  28 gagaaatagagtagatttgatgtgttgtttg 58  Q
    |||||||||||||||||||||||||||||||    
T  46614537 gagaaatagagtagatttgatgtgttgtttg 46614507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 4851426 - 4851386
Alignment:
Q  18 agaaagataagagaaatagagtagatttgatgtgttgtttg 58  Q
    ||||| ||| ||||||||||||||||||||||| |||||||    
T  4851426 agaaaaatatgagaaatagagtagatttgatgtattgtttg 4851386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 26940410 - 26940370
Alignment:
Q  18 agaaagataagagaaatagagtagatttgatgtgttgtttg 58  Q
    ||||||||  ||||||||||||||||||||||| |||||||    
T  26940410 agaaagatgtgagaaatagagtagatttgatgtattgtttg 26940370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 32277559 - 32277520
Alignment:
Q  18 agaaagataagagaaatagagtagatttgatgtgttgttt 57  Q
    ||||||| | ||||||||||||||||||||||||||||||    
T  32277559 agaaagagatgagaaatagagtagatttgatgtgttgttt 32277520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 58
Target Start/End: Complemental strand, 24346229 - 24346199
Alignment:
Q  28 gagaaatagagtagatttgatgtgttgtttg 58  Q
    |||||||||||||||||||||||||||||||    
T  24346229 gagaaatagagtagatttgatgtgttgtttg 24346199  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 58
Target Start/End: Original strand, 43884973 - 43885003
Alignment:
Q  28 gagaaatagagtagatttgatgtgttgtttg 58  Q
    |||||||||||||||||||||||||||||||    
T  43884973 gagaaatagagtagatttgatgtgttgtttg 43885003  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 28255234 - 28255205
Alignment:
Q  29 agaaatagagtagatttgatgtgttgtttg 58  Q
    ||||||||||||||||||||||||||||||    
T  28255234 agaaatagagtagatttgatgtgttgtttg 28255205  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 50001936 - 50001896
Alignment:
Q  18 agaaagataagagaaatagagtagatttgatgtgttgtttg 58  Q
    ||||||||  ||||||||||||||||||||||| |||||||    
T  50001936 agaaagatgtgagaaatagagtagatttgatgtattgtttg 50001896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 567199 - 567159
Alignment:
Q  18 agaaagataagagaaatagagtagatttgatgtgttgtttg 58  Q
    ||||| |||||||||||||||||||||||| | ||||||||    
T  567199 agaaaaataagagaaatagagtagatttgaggggttgtttg 567159  T

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