View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19598_low_54 (Length: 238)
Name: NF19598_low_54
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_low_54 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 196646 - 196440
Alignment:
| Q |
15 |
gaagccggttgtgctagaagtcacaatgtttcgtgcggttgactatcttgactaacgatatgtgcatcctttcagctgtgatgaatgaggcgtgttgttg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
196646 |
gaagccggttgtgctagaagtcacaatgtttcgtgcggttgactatcttgactaacgatatgtgcttcctttcagctgtgatgaatgaggcgtgttgttg |
196547 |
T |
|
| Q |
115 |
caacctatgagtagttttggtaacaactagtaacaggcacttctgcacttgtgtatgttgtgtttgattgttttaatattatgtttttgctttttggatc |
214 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
196546 |
caacctatgagtagttttggtaccaactagtaacaggcacttctgcacttgtgtatgttgtgtttgattgttttaatattatgtttttgctttttggatc |
196447 |
T |
|
| Q |
215 |
atgaagc |
221 |
Q |
| |
|
||||||| |
|
|
| T |
196446 |
atgaagc |
196440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 29837806 - 29837765
Alignment:
| Q |
19 |
ccggttgtgctagaagtcacaatgtttcgtgcggttgactat |
60 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
29837806 |
ccggttgtgctaaaagtcacaatgtttcgtgctattgactat |
29837765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 6901879 - 6901915
Alignment:
| Q |
24 |
tgtgctagaagtcacaatgtttcgtgcggttgactat |
60 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
6901879 |
tgtgctagaagtcacgatgtttcgtgtggttgactat |
6901915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University