View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19598_low_57 (Length: 224)
Name: NF19598_low_57
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 20637385 - 20637167
Alignment:
| Q |
1 |
ccttcatccttgtgcttgcttgaacagccaaggccatgacttctgttctctcacatttacctcgtgtgatgatcctcattctttcttcttgcactaggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
20637385 |
ccttcatccttgtgcttgcttgaacagccaaggccatgacttctgttctctcacctttacctcgtgtgatgatcctcattctttcttcttgtactaggat |
20637286 |
T |
|
| Q |
101 |
agagtacatcttatttaatgatggtattggatatgtagctagcaaatttgagtgaactgt-ccataaagttcatcatctaggcccataaaaaacgtgtga |
199 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
20637285 |
agagtacatcttatttaatgatggtattggatctgtagctagcaaatttgagcgaactgtcccataaagttcatcatctaggcccataaaaaatgtgtga |
20637186 |
T |
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| Q |
200 |
cttttttcctcttctctgc |
218 |
Q |
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||||||||||||||||||| |
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| T |
20637185 |
cttttttcctcttctctgc |
20637167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 52795788 - 52796006
Alignment:
| Q |
1 |
ccttcatccttgtgcttgcttgaacagccaaggccatgacttctgttctctcacatttacctcgtgtgatgatcctcattctttcttcttgcactaggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
52795788 |
ccttcatccttgtgcttgcttgaacagccaaggccatgacttctgttctctcacctttccctcgtgtgatgatcctcattctttcttcttgtactaggat |
52795887 |
T |
|
| Q |
101 |
agagtacatcttatttaatgatggtattggatatgtagctagcaaatttgagtgaactgt-ccataaagttcatcatctaggcccataaaaaacgtgtga |
199 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
52795888 |
agagtacatcttatttaatgatggtattggatctgtagctagcaaatttgagcgaactgtcccataaagttcatcatctaggcccatcaaaaacgtgtga |
52795987 |
T |
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| Q |
200 |
cttttttcctcttctctgc |
218 |
Q |
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||||||||||||||||||| |
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| T |
52795988 |
cttttttcctcttctctgc |
52796006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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