View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19598_low_59 (Length: 215)
Name: NF19598_low_59
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 15639122 - 15638912
Alignment:
| Q |
1 |
tattatattattttcttttgtttaacattatgcattctaatcaacatttttactatgtcatggtatacagataccattgctaaggcatttggagacaaca |
100 |
Q |
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| T |
15639122 |
tattatattattttcttttgtttaacattatgcattctaatcaacatttttactatgtcatggtatacagataccattgctaaggcatttggagacaaca |
15639023 |
T |
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| Q |
101 |
ggttgtcacattttatctcgagtattcaaaacacaccaccctgagacttgtcattctggaagattatacatggaaataacttatattatctcatttttgc |
200 |
Q |
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| T |
15639022 |
ggttgtcacattttatctcgagtattcaaaacacaccaccctgaaacttgtcattctggaagattatacatggaaataacttacattatctcatttttgc |
15638923 |
T |
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| Q |
201 |
catattcttgg |
211 |
Q |
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|||||| |||| |
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| T |
15638922 |
catatttttgg |
15638912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 211
Target Start/End: Original strand, 33519651 - 33519797
Alignment:
| Q |
65 |
atacagataccattgctaaggcatttggagacaacaggttgtcacattttatctcgagtattcaaaacacaccaccctgagacttgtcattctggaagat |
164 |
Q |
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|||||||| |||||||||||||||||||| || || ||||| || | || || ||| || ||||| |||||||||||||||||||| |||||||| |
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| T |
33519651 |
atacagattccattgctaaggcatttggaaactactagttgtaacctattggctaaagtttttaaaactcaccaccctgagacttgtcactctggaaggc |
33519750 |
T |
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| Q |
165 |
tatacatggaaataacttatattatctcatttttgccatattcttgg |
211 |
Q |
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|||| ||||||||||||||||| || || ||| ||||||||| |||| |
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| T |
33519751 |
tatatatggaaataacttatatcatatcctttatgccatattattgg |
33519797 |
T |
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