View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19598_low_6 (Length: 509)
Name: NF19598_low_6
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 19 - 499
Target Start/End: Original strand, 27801223 - 27801704
Alignment:
| Q |
19 |
aagcacattgtgaaccctcatgaggttggtttgtcacaaactttagttgattagatcttcannnnnnnnnnnnnnnngctttctgttaagtaatcattat |
118 |
Q |
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| T |
27801223 |
aagcacattgtgaaccctcatgaggttggtttgtcacaagctttagttgatcagatcttcatttttatttttgttttgctttctgttaagtaatcattat |
27801322 |
T |
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| Q |
119 |
tgttcaattgacaaatatgcagagatttgggataataatgaggggattacaggatgcccttatagtttcttcatctctccaaattattcttggctttagt |
218 |
Q |
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| T |
27801323 |
tgttcaattgacaaatatgcagagatttgggataataatgaggggattacaggatgcccttatagtttcttcatctctccaaattattcttggctttagt |
27801422 |
T |
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| Q |
219 |
ggccttttggcactatgtagttgggttttcaaatctgtccggttttaccattttttccaatagaaaataattttacaccaacgttgcattacacgctttt |
318 |
Q |
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| T |
27801423 |
ggccttttggcactatgtagttgggttttcaaatctgtccgattttaccattttttccaatagaaaataattttacaccaacgttgcattacacgctttt |
27801522 |
T |
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| Q |
319 |
acactccatagtttttaatcacttttctattttgtgcagtgagatgatgagtccattgacaagctgttcttgaatcgccaacttaccctatgtgctactg |
418 |
Q |
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| T |
27801523 |
acactccatagtttttaatcacttttctattttgtgcagtgagatgatgagtccattgacaagctgttcttgaatcgccaacttaccctatgtgctactg |
27801622 |
T |
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| Q |
419 |
gtactatattcagacgtgacaatgaagccgttcc-tcagctggtgagaagtttcttctcctcattccttggaatatcctatg |
499 |
Q |
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| T |
27801623 |
gtactatattcagacgtgacaatgaagccgttccttcagctggtgagaagtttcttctcctcattccttggaatatcctatg |
27801704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 489
Target Start/End: Original strand, 27770799 - 27770861
Alignment:
| Q |
427 |
ttcagacgtgacaatgaagccgttcctcagctggtgagaagtttcttctcctcattccttgga |
489 |
Q |
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||||||| | |||||||| ||||| |||||||||||||||||| |||| | |||||||||||| |
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| T |
27770799 |
ttcagacataacaatgaatccgttgctcagctggtgagaagttgcttcacatcattccttgga |
27770861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 98 - 225
Target Start/End: Complemental strand, 26474961 - 26474834
Alignment:
| Q |
98 |
tttctgttaagtaatcattattgttcaattgacaaatatgcagagatttgggataataatgaggggattacaggatgcccttatagtttcttcatctctc |
197 |
Q |
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| T |
26474961 |
tttctattatgtaatcattgttgtctaattgacaaatatgcagaaatttgagaagataatgaggggaacacagggtgcccttatagttgcttcaacactt |
26474862 |
T |
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| Q |
198 |
caaattattcttggctttagtggccttt |
225 |
Q |
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| T |
26474861 |
caaattgttcttggctttagtggacttt |
26474834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 26475036 - 26474980
Alignment:
| Q |
23 |
acattgtgaaccctcatgaggttggtttgtcacaaactttagttgattagatcttca |
79 |
Q |
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| T |
26475036 |
acattgtgaatcctcatgaggttggtttctcgcaaatttaagttgattatatcttca |
26474980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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