View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19598_low_8 (Length: 500)
Name: NF19598_low_8
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 20 - 492
Target Start/End: Complemental strand, 41655828 - 41655369
Alignment:
| Q |
20 |
ccgttgatgcagtttgtggccttcctttaacgtcagtgtcctgctcacatgagaaaaacagttactcctaaactgtatggctttttcaatcagaaaaata |
119 |
Q |
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| T |
41655828 |
ccgttgatgcagtttgtgaccttcctttaacgtcagtgtcctgctcacatgagaaaaacagttactcctaaactgtatggctttttcaatcagaaaaata |
41655729 |
T |
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| Q |
120 |
gaaaggaaactatacaagaataaacttgacggttcaatttattatgataaataaagacaagtgaaaactaagggcagggaggataaacctcttaaaaatc |
219 |
Q |
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| T |
41655728 |
gaaaggaaactatacaagaataaactcgaccgttcaatttattatgataaataaagacaagtgaaaactaagggcagggaggataaccctcttaaaaatc |
41655629 |
T |
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| Q |
220 |
taataaaagcaggcatatcattgttcctaattaatcaagatacaccaaatgaaagaataccactgttgtccttcttcccattttgtttcattcttttata |
319 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| ||| | || ||||||||||||||||||||||||||||| |
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| T |
41655628 |
taataaaagcaggcatatcattgttcctaattaattaagatacaccaa-------------actagtttcattcttcccattttgtttcattcttttata |
41655542 |
T |
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| Q |
320 |
ttcattttcatccatctaactagtttaaatttgtgcattggaagatccatcaacaatttaaacacaagtacgcacatgtgtgtgtgcgcatgcatgcaca |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
41655541 |
ttcattttcatccatctaactagtttaaatttgtgcattggaagatccatcaacaatttaaacacaagtacgcacatgtgtgtgcgcgcacacatgcaca |
41655442 |
T |
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| Q |
420 |
attgtacctgtggtatgtgcaaataaatgtagttctttgcagtagttggattgtgattttctgtacctttgct |
492 |
Q |
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| T |
41655441 |
attgtacctgtggtatgtgcaaataaatgtagttctttgcagtagttggattgtgagtttctgcacctttgct |
41655369 |
T |
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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 422 - 492
Target Start/End: Original strand, 28812768 - 28812838
Alignment:
| Q |
422 |
tgtacctgtggtatgtgcaaataaatgtagttctttgcagtagttggattgtgattttctgtacctttgct |
492 |
Q |
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||||||||||||| ||||| ||| |||||||||||||| |||||||||||||||||||| | ||||||||| |
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| T |
28812768 |
tgtacctgtggtaagtgcatatatatgtagttctttgctgtagttggattgtgattttccgcacctttgct |
28812838 |
T |
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