View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19599_high_10 (Length: 327)
Name: NF19599_high_10
Description: NF19599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19599_high_10 |
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| [»] scaffold0013 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 23 - 315
Target Start/End: Complemental strand, 5670917 - 5670625
Alignment:
| Q |
23 |
gaaaatggattcatgatcatggtggtgtgacatacgtaccttcatggggaaaaatctggctttcggtaatgttttacttcattttataaaaaagtataaa |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5670917 |
gaaaatggattcatgatcatggtggtgtgacatacgtaccttcatggggaaaaatttggctttcggtaatgttttacttcattttataaaaaagtataaa |
5670818 |
T |
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| Q |
123 |
tatgcacgaaatagtatacctatatatatgtatagccaatttgattgaatattgaaactatacagatacttggtatctttgattggcgtgcaagcaaccc |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5670817 |
tatgcacgaaatagtatacctatatatatgtatagccaatttgattgaatattgaaactatacagatacttggtatctttgattggcgtgcaagcaaccc |
5670718 |
T |
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| Q |
223 |
aatgcctcctgagttttggatgcttccctcatttcttcttaagcatccaggttgtattatcttgcttatgctgtcactctctttatgaaacaa |
315 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5670717 |
aatgccccctgagttttggatgcttccctcatttcttcttaagcatccaggttgtattatcttgcttatgctgtcactctctttatggaacaa |
5670625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 23 - 281
Target Start/End: Complemental strand, 5723007 - 5722747
Alignment:
| Q |
23 |
gaaaatggattcatgatcatggtggtgtgacatacgtaccttcatggggaaaaatctggctttcggtaatgttttacttcattttataaaaaagtataaa |
122 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5723007 |
gaaaatggattcatgatcatggtggtgtgacatacgtgtcttcatggggaaaaatctggctttcggtaatgttttacttcattttataaaaaagtataaa |
5722908 |
T |
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| Q |
123 |
tatgcacgaaatagtatacctatatatat--gtatagccaatttgattgaatattgaaactatacagatacttggtatctttgattggcgtgcaagcaac |
220 |
Q |
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| T |
5722907 |
tatgcacgaaatagtatacctatatatatatgtatagccaatttgattgaatattgaaactatacagatacttggtatctttgattggcgtgcaagcaac |
5722808 |
T |
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| Q |
221 |
ccaatgcctcctgagttttggatgcttccctcatttcttcttaagcatccaggttgtatta |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5722807 |
ccaatgcctcctgagttttggatgcttccctcatttcttcttaagcatccaggttgaatta |
5722747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 23 - 281
Target Start/End: Complemental strand, 5692663 - 5692407
Alignment:
| Q |
23 |
gaaaatggattcatgatcatggtggtgtgacatacgtaccttcatggggaaaaatctggctttcggtaatgttttacttcattttataaaaaagtataaa |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5692663 |
gaaaatggattcatgatcatggtggtgtgacatacgtaccttcatggggaaaattttggctttcggtaatgttttacttcattttataaaaaa-tataaa |
5692565 |
T |
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| Q |
123 |
tatgcacgaaatagtatacctatatatatgtatagccaatttgattgaatattgaaa-------ctatacagatacttggtatctttgattggcgtgcaa |
215 |
Q |
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| T |
5692564 |
tatgcacaaaatagtgta--------tatatatagccaatctgattgattattgaaagttgaaactatacagatacttggtatctttgattggcgtgcaa |
5692473 |
T |
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| Q |
216 |
gcaacccaatgcctcctgagttttggatgcttccctcatttcttcttaagcatccaggttgtatta |
281 |
Q |
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| T |
5692472 |
gcaacccaatgcctcctgagttttggatgcttccctcatttcttcttaagcatccaggttgaatta |
5692407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 186 - 275
Target Start/End: Original strand, 103228 - 103317
Alignment:
| Q |
186 |
agatacttggtatctttgattggcgtgcaagcaacccaatgcctcctgagttttggatgcttccctcatttcttcttaagcatccaggtt |
275 |
Q |
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| T |
103228 |
agatacttggtctctttgattggttgggaagcaacccaatgccccctgagttttggatccttccttcatttcttcctatgcatccaggtt |
103317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 186 - 275
Target Start/End: Original strand, 162499 - 162588
Alignment:
| Q |
186 |
agatacttggtatctttgattggcgtgcaagcaacccaatgcctcctgagttttggatgcttccctcatttcttcttaagcatccaggtt |
275 |
Q |
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| T |
162499 |
agatacttggtgtatatgattggtcgggaagcaacccaatgccccctgagttttggatccttccttcatttcttcctatgcatccaggtt |
162588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 12138182 - 12138115
Alignment:
| Q |
23 |
gaaaatggattcatgatcatggtggtgtgacatacgtaccttcatggggaaaaatctggctttcggta |
90 |
Q |
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|||| ||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||| |
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| T |
12138182 |
gaaagtggattcatgatcatggtggtgtgacacagataccttcatggggaaaaacttggctttcggta |
12138115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 276
Target Start/End: Complemental strand, 93138 - 93048
Alignment:
| Q |
186 |
agatacttggtatctttgattggcgtgcaagcaacccaatgcctcctgagttttggatgcttccctcatttcttcttaagcatccaggttg |
276 |
Q |
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||||||||||| | ||||||||| ||| ||||||||||||||| ||||| |||||| | ||||| |||||||| | || |||||||||||| |
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| T |
93138 |
agatacttggtctttttgattggagtggaagcaacccaatgccacctgaattttggctccttccttcatttctccctatgcatccaggttg |
93048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 93289 - 93227
Alignment:
| Q |
28 |
tggattcatgatcatggtggtgtgacatacgtaccttcatggggaaaaatctggctttcggta |
90 |
Q |
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| T |
93289 |
tggattcgtgttcatggtggtgtaacacatataccttcatggggaaaaacatggctttcggta |
93227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 186 - 292
Target Start/End: Original strand, 13052180 - 13052286
Alignment:
| Q |
186 |
agatacttggtatctttgattggcgtgcaagcaacccaatgcctcctgagttttggatgcttccctcatttcttcttaagcatccaggttgtattatctt |
285 |
Q |
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||||||||||| | ||||||||| || | ||||||| ||||| |||||||||||||| || || |||||||||| || ||||||||||| ||||| || |
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| T |
13052180 |
agatacttggtgtatttgattggtctggatgcaacccgatgccccctgagttttggatcctaccttcatttcttcctatgcatccaggttcaattatttt |
13052279 |
T |
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| Q |
286 |
gcttatg |
292 |
Q |
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| T |
13052280 |
gattatg |
13052286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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