View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19599_high_14 (Length: 255)
Name: NF19599_high_14
Description: NF19599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19599_high_14 |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0076 (2 HSPs) |
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| [»] scaffold0272 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 33704860 - 33704623
Alignment:
| Q |
18 |
attaagtccatgtttagtgctatcctatcagtggcttcttggtaatggttttggcatgaaattaccttcactatcgcgtatgacacctccgcagccagca |
117 |
Q |
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| T |
33704860 |
attaagtccatgtttagtgctatcctatcagtggcttcttggtaatggttttggcatgaaattaccttcactatcgcgtatgacacctccgcagccagca |
33704761 |
T |
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| Q |
118 |
attcttatgtcgatcgccacacagttccatcacagttaaaagccatgaaacctgctggaggttgttagttccttcaacaatttacgggatctccaccttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33704760 |
attcttatgtcgatcgccacacagttccatcacagttaaaagccatgaaacctgctggaggttgttagttccttcaacaatttacgggatctccaccttt |
33704661 |
T |
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| Q |
218 |
tatgttgatctcgtatgttactaccgttacaataagct |
255 |
Q |
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|||||||||| | ||||||||||||||||||||||||| |
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| T |
33704660 |
tatgttgatcacttatgttactaccgttacaataagct |
33704623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 33715355 - 33715311
Alignment:
| Q |
74 |
tgaaattaccttcactatcgcgtatgacacctccgcagccagcaa |
118 |
Q |
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| T |
33715355 |
tgaaattaccttcactaccgcgtatgacaccaccacagccagcaa |
33715311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 137
Target Start/End: Complemental strand, 21183442 - 21183379
Alignment:
| Q |
74 |
tgaaattaccttcactatcgcgtatgacacctccgcagccagcaattcttatgtcgatcgccac |
137 |
Q |
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| T |
21183442 |
tgaaattaccttcactatcacatatgacaccaccgcagtcagcaactcctttgtcgatcaccac |
21183379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 18827 - 18769
Alignment:
| Q |
165 |
aaacctgctggaggttgttagttccttcaacaatttacgggatctccaccttttatgtt |
223 |
Q |
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| T |
18827 |
aaacctgttggaggttgttagttccttcaacaatttacgggatctccaccttttatgtt |
18769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 255
Target Start/End: Complemental strand, 18726 - 18690
Alignment:
| Q |
219 |
atgttgatctcgtatgttactaccgttacaataagct |
255 |
Q |
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| T |
18726 |
atgttgatctcttatgttactacctttacaataagct |
18690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 180
Target Start/End: Original strand, 10334 - 10438
Alignment:
| Q |
74 |
tgaaattaccttcactatcgcgtatgacacctccgcagccagcaattcttatgtcgatcgccacacagttccatcacagttaaaagccatgaaacctgct |
173 |
Q |
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|||||||||||||||| ||||||||| || | | ||||||||||| || | |||||||||| ||||| |||||| |||||| ||||| ||||||||| |
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| T |
10334 |
tgaaattaccttcactttcgcgtatgccaacacggcagccagcaactcctctgtcgatcgc--cacagctccatcgaagttaagagccacaaaacctgct |
10431 |
T |
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| Q |
174 |
ggaggtt |
180 |
Q |
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||||||| |
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| T |
10432 |
ggaggtt |
10438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 180
Target Start/End: Original strand, 71632 - 71736
Alignment:
| Q |
74 |
tgaaattaccttcactatcgcgtatgacacctccgcagccagcaattcttatgtcgatcgccacacagttccatcacagttaaaagccatgaaacctgct |
173 |
Q |
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|||||||||||||||| ||||||||| || | | ||||||||||| || | |||||||||| ||||| |||||| |||||| ||||| ||||||||| |
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| T |
71632 |
tgaaattaccttcactttcgcgtatgccaacacggcagccagcaactcctctgtcgatcgc--cacagctccatcgaagttaagagccacaaaacctgct |
71729 |
T |
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| Q |
174 |
ggaggtt |
180 |
Q |
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||||||| |
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| T |
71730 |
ggaggtt |
71736 |
T |
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