View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19599_high_8 (Length: 364)
Name: NF19599_high_8
Description: NF19599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19599_high_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 5 - 364
Target Start/End: Complemental strand, 55963843 - 55963471
Alignment:
| Q |
5 |
aaaatcttcacatcggcggcacaaattaa-tttacgcttttatagggtatgtgtcaacttcttagcaactcaaccgacctccattgtgttggctattgtg |
103 |
Q |
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| T |
55963843 |
aaaatcttcacatcggcggcacaaattaaatttacgctcttatagggtatgtgtcaacttcttagcaactcaaccgacctccattgtgttggctattgcg |
55963744 |
T |
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| Q |
104 |
tagctagagaaaataagt----------tatcatagggtatattataattatgttgagcctccgcccatcgcgataccaaatattcactaaaa--caacc |
191 |
Q |
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| T |
55963743 |
tagctagagaaaataagtgtatatttgttatcatagggtatagtataattatgttgagcctccgcccatcgcgataccaaatattcactaaaaaacaacc |
55963644 |
T |
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| Q |
192 |
atcttatccaaatactattagatcaatttaattttaaaatttgagttgtacttgtatctaactcaacttataaacataatttcaggcaattgtaatatct |
291 |
Q |
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|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55963643 |
atcttatccaaatattattagatcaatttacttttaaaatttgagttgtacttgtatctaactcaacttataaacataatttcaggcaattgtaatatct |
55963544 |
T |
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| Q |
292 |
cattccattcaatggaggacttttaactgagtttactatggtacaaattaaataaaactatggattcaaaaac |
364 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55963543 |
cattccattcaatggaggacttttaaccgagtttactatggtacaaattaaataaaactatggattcaaaaac |
55963471 |
T |
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