View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19599_low_1 (Length: 478)
Name: NF19599_low_1
Description: NF19599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19599_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 4 - 333
Target Start/End: Complemental strand, 43674080 - 43673751
Alignment:
| Q |
4 |
aagaatatgtgggttacacttaaaaccaccttattggagaagacaaattaatgaaaaatgttgttaaaaaggaaatactgcctaccatgccaaattcctc |
103 |
Q |
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| T |
43674080 |
aagaaaatgtgggttacacttaaaaccaccttattggagaagacaaattaatgaaaaatgttgttaaaaaggaaatactgcctaccatgccaaattcctc |
43673981 |
T |
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| Q |
104 |
ggcatcccaactgcagagaacgattgtcctccttggcttccaccctgaatgcagtagaatagagtatcgccgagcaatgtcaagtagggcagctgtccca |
203 |
Q |
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| T |
43673980 |
ggcatcccaactgcagagaacgattgtcctccttggcttccaccctgaatgcagtagaatagagtatcgacgagcaatgtcaagtagggcagctgtccca |
43673881 |
T |
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| Q |
204 |
ctgcttgggtcaacagcaccataagtccatgcatctctatggttcccaagaagaacatggcgatcaggttcttctgatccttttatgacagcaaaaacat |
303 |
Q |
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| T |
43673880 |
ctgcttggatcaacagcaccataagtccatgcatctctatggttcccaagaagaacatggcgatcaggttcttctgatccttttatgacagcaaaaacat |
43673781 |
T |
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| Q |
304 |
tttgaatggtggccactttcttttcaccct |
333 |
Q |
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| T |
43673780 |
tttgaatggtggccattttcttttcaccct |
43673751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 87 - 333
Target Start/End: Original strand, 43400572 - 43400810
Alignment:
| Q |
87 |
accatgccaaattcctcggcatcccaactgcagagaacgattgtcctccttggcttccaccctgaatgcagtagaatagagtatcgccgagcaatgtcaa |
186 |
Q |
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| T |
43400572 |
accatgccaaatttctctacatcccaactgcggagaacaattgtcctcctctgcttccaccctgaacacaataaaatattgt-----cgagcatggtcaa |
43400666 |
T |
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| Q |
187 |
gtagggcagctgtcccactgcttgggtcaacagcaccataagtccatgcatctctatggttcccaagaagaacatggcgatcaggttcttctgatccttt |
286 |
Q |
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| T |
43400667 |
gtaggacagctgtcctactgccgggatcaatagcgc---atgttcatgcatttctatggttcccaagcagaacttggcaatcaggttcttctgatccttt |
43400763 |
T |
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| Q |
287 |
tatgacagcaaaaacattttgaatggtggccactttcttttcaccct |
333 |
Q |
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| T |
43400764 |
tatcacagaagaaacattttgaatgatggtcgccttcttttcaccct |
43400810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 386 - 462
Target Start/End: Complemental strand, 43673698 - 43673622
Alignment:
| Q |
386 |
ctattacaagattaagcttaactgttttgttcctcttttttaacaccacaattcatttctattgctatctacaaaca |
462 |
Q |
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| T |
43673698 |
ctattacaagattaagcttaactgttttgttcctcttttttaacaccacaattcatttctattgctatctaccaaca |
43673622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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