View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19599_low_11 (Length: 301)
Name: NF19599_low_11
Description: NF19599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19599_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 1718615 - 1718340
Alignment:
| Q |
19 |
catccttcttctcccacaaacccattaaccgtaatatctcttcctgttgtcttgccagacgtgcgagctcctcttgattcttcatgcattccacttttaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1718615 |
catccttcttctcccacaaacccattaaccgtaacatctcttcctgttgtcttgccagacgtgcgagctcctcttgattcttcatgcattcctcttttaa |
1718516 |
T |
|
| Q |
119 |
caaaaccataacttcatcatctcttgcttcccttcctttttcttcagctgtttctttagcgtctgcttgagcagccatatccgagtgaaactgagaatat |
218 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1718515 |
caaaaccataacttcatcatctcttgcttccctttctttttcttcagctgtttctttagcgtctgcttgagcagccatatccgagtgaaactgagaatat |
1718416 |
T |
|
| Q |
219 |
tgctgcgcagcagttacattgttgttcggagcaacnnnnnnnctgatagaaaagtttttgcatcttgcttcttctc |
294 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
1718415 |
tgctgcgcagcagttacattgttgttcggagtaactttttttctgatagaaaagtttttgcatcttgcttcttctc |
1718340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 20006905 - 20007089
Alignment:
| Q |
19 |
catccttcttctcccacaaacccattaaccgtaatatctcttcctgttgtcttgccagacgtgcgagctcctcttgattcttcatgcattccacttttaa |
118 |
Q |
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||||| |||||||||||||| |||||| | ||| ||||| || ||||||||||||||| | | ||| |||||||||||||||| | ||| | ||||||| |
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| T |
20006905 |
catccctcttctcccacaaagccattacctctaacatctcctcttgttgtcttgccagatgcgtgagttcctcttgattcttcaagtattgctcttttaa |
20007004 |
T |
|
| Q |
119 |
caaaaccataacttcatcatctcttgcttcccttcctttttcttcagctgtttctttagcgtctgcttgagcagccatatccgagtgaaactga |
212 |
Q |
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||||||||||| || || |||| || ||||||||||| | ||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
20007005 |
caaaaccataagtttat---------cttcattttctttttcttcaaccgtttctttagcttctgcttgagcagccatatcagagtgaaactga |
20007089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 26648582 - 26648411
Alignment:
| Q |
19 |
catccttcttctcccacaaacccattaaccgtaatatctcttcctgttgtcttgccagacgtgcgagctcctcttgattcttcatgcattccacttttaa |
118 |
Q |
| |
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||||| |||||||| |||| | |||||| | || |||| ||| |||||||||||||| || ||| |||||||| ||||||| | || | ||||||| |
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| T |
26648582 |
catccctcttctccttcaaatctattaactgaaacatcttttcttgttgtcttgccaggcgcctgagttcctcttggttcttcaagtatagctcttttaa |
26648483 |
T |
|
| Q |
119 |
caaaaccataacttcatcatctcttgcttcccttcctttttcttcagctgtttctttagcgtctgcttgagc |
190 |
Q |
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|||||||| |||||||| ||| ||| ||| |||||||||||||||| | | ||||||||| | ||||||||| |
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| T |
26648482 |
caaaaccacaacttcatgatcactttctttccttcctttttcttcaaccgcttctttagcttgtgcttgagc |
26648411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 26654574 - 26654458
Alignment:
| Q |
27 |
ttctcccacaaacccattaaccgtaatatctcttcctgttgtcttgccagacgtgcgagctcctcttgattcttcatgcattccacttttaacaaaacca |
126 |
Q |
| |
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||||||| |||| ||||||| ||||| |||||||| ||||||||||| |||||||| | |||||||||||||||| || | | |||| || |||| || |
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| T |
26654574 |
ttctccctcaaatccattaaacgtaacatctcttcttgttgtcttgctagacgtgccatttcctcttgattcttcaagctatgctctttcaataaaatca |
26654475 |
T |
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| Q |
127 |
taacttcatcatctctt |
143 |
Q |
| |
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|||||||||||||||| |
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| T |
26654474 |
caacttcatcatctctt |
26654458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 212
Target Start/End: Complemental strand, 17115513 - 17115339
Alignment:
| Q |
35 |
caaacccattaaccgtaatatctcttcctgttgtcttgccagacgtgcgagctcctcttgattcttcatgcattccacttttaacaaaaccataacttca |
134 |
Q |
| |
|
|||| |||||||| | || ||| |||| ||||||||||||||||| ||| || ||||||||||||| | ||| | |||||| || ||||| | |||| |
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| T |
17115513 |
caaagccattaactgaaacatcacttcatgttgtcttgccagacgcctgagttcgtcttgattcttcaagtattgctcttttagcagaaccacattttca |
17115414 |
T |
|
| Q |
135 |
tcatctcttgcttcccttcctttttcttcagctgtttctttagcgtctgcttgagcagccatatccgagtgaaactga |
212 |
Q |
| |
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| ||| ||| || |||||||| ||||| ||||||| |||| ||||||| |||||||||||| |||||||||||| |
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| T |
17115413 |
tgatcactttct---cttcctttcccttcaactgtttccatagcttctgctttagcagccatatcggagtgaaactga |
17115339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 242
Target Start/End: Original strand, 20014850 - 20015057
Alignment:
| Q |
35 |
caaacccattaaccgtaatatctcttcctgttgtcttgccagacgtgcgagctcctcttgattcttcatgcattccacttttaacaaaaccataacttca |
134 |
Q |
| |
|
|||| |||||| |||||| ||||| || ||||||||||||||| | ||| |||||||||||||||| | ||| | ||||||| ||||||| | ||||| |
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| T |
20014850 |
caaatccattagccgtaacatctcatcttgttgtcttgccagaagcctgagttcctcttgattcttcaagtattgctcttttaagaaaaccaaagcttca |
20014949 |
T |
|
| Q |
135 |
tcatctcttgcttcccttcctttttcttcagctgtttctttagcgtctgcttgagcagccatatccgagtgaaactgagaatattgctgcgcagcagtta |
234 |
Q |
| |
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| ||| ||| ||| |||| |||| ||||| || |||||||| | |||||||| || ||| | ||||||||||| || || ||||||| ||| | |
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| T |
20014950 |
tgatcactttcttttcttctttttacttcaacttcttctttagattgtgcttgagtagaaataccatagtgaaactgaagatttttctgcgcaacagcca |
20015049 |
T |
|
| Q |
235 |
cattgttg |
242 |
Q |
| |
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|||||||| |
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| T |
20015050 |
cattgttg |
20015057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 19990648 - 19990584
Alignment:
| Q |
60 |
tcctgttgtcttgccagacgtgcgagctcctcttgattcttcatgcattccacttttaacaaaac |
124 |
Q |
| |
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||||||| |||||||||||||| ||| |||||||||||||||| | ||| | ||||||| ||||| |
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|
| T |
19990648 |
tcctgttctcttgccagacgtgtgagttcctcttgattcttcaagtatttctcttttaagaaaac |
19990584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 20033083 - 20033160
Alignment:
| Q |
25 |
tcttctcccacaaacccattaaccgtaatatctcttcctgttgtcttgccagacgtgcgagctcctcttgattcttca |
102 |
Q |
| |
|
||||||||| |||| ||| |||||| || |||||||||||||| | | | | ||||||||| ||| |||||||||||| |
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|
| T |
20033083 |
tcttctccctcaaagccaataaccgcaagatctcttcctgttggcgtactacacgtgcgagttccccttgattcttca |
20033160 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 242
Target Start/End: Original strand, 26353586 - 26353786
Alignment:
| Q |
42 |
attaaccgtaatatctcttcctgttgtcttgccagacgtgcgagctcctcttgattcttcatgcattccacttttaacaaaaccataacttcatcatctc |
141 |
Q |
| |
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||||| ||||| |||||||||||||||||||||||||| ||| |||||||||| ||||| | ||| | |||||||| |||||| || ||||| ||| | |
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| T |
26353586 |
attaatcgtaacatctcttcctgttgtcttgccagacgcctgagttcctcttgatccttcaagtattgctcttttaaccaaaccacaagttcatgatcac |
26353685 |
T |
|
| Q |
142 |
ttgcttcccttcctttttcttcagctgtttctttagcgtctgcttgagcagccatatccgagtgaaactgagaatattgctgcgcagcagttacattgtt |
241 |
Q |
| |
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|| ||| ||||||| | ||||| | ||||||||||| ||||||||||||| ||||||| | ||||||| || ||||| || | ||||||||||||| |
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| T |
26353686 |
tttcttttcttccttgtccttcaaccgtttctttagcttctgcttgagcagaaatatccgggaaaaactgaagatcttgctccgtaacagttacattgtt |
26353785 |
T |
|
| Q |
242 |
g |
242 |
Q |
| |
|
| |
|
|
| T |
26353786 |
g |
26353786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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