View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19599_low_12 (Length: 293)
Name: NF19599_low_12
Description: NF19599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19599_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 10 - 276
Target Start/End: Complemental strand, 54794880 - 54794614
Alignment:
| Q |
10 |
aagaatatggaacggggtgcattatatcagtcattgtttgattttccatcatttgcttttcaaaattatccatgatagacaggaacaattgaaaggctca |
109 |
Q |
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| T |
54794880 |
aagaatatggaacggggtgcattatatcagtcattgtttgattttccatcatttgcttttcaaaattatccatgatagacaggaacaattgaaaggctca |
54794781 |
T |
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| Q |
110 |
aggtctaacaaaccaaataccttttgatgcagtgattgcatagcacaggagcatcaacataggtcaggtgtgaagcttgagtttgtttgacatagactta |
209 |
Q |
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| T |
54794780 |
aggtctaacaaaccaaataccttttgatgcagtgattgcatagcacaggagcatcaacataggtcaggtgtgaagcttgagtttgtttgacatagactta |
54794681 |
T |
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| Q |
210 |
tcttatttgacaaacttgtaaactagtttgtggttactcttggtaaagcttacaacaaatatctttt |
276 |
Q |
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| T |
54794680 |
tcttatttgacaaacttgtaaattagtttgtggttactcttggtaaagcttacaacaaatatctttt |
54794614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 25 - 260
Target Start/End: Complemental strand, 52287628 - 52287391
Alignment:
| Q |
25 |
ggtgcattatatcagtcattgtttgattttccatcatttgcttttcaaaattatccatgatagacaggaacaattgaaaggctcaaggtctaacaaacca |
124 |
Q |
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| T |
52287628 |
ggtgtattatatcagtcattgtttgattt-ccatcatttgcttttcaaaattatccatga----caggaacaattgaaaggcccaaggtctaacaaacca |
52287534 |
T |
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| Q |
125 |
aataccttttga-------tgcagtgattgcatagcacaggagcatcaacataggtcaggtgtgaagcttgagtttgtttgacatagacttatcttattt |
217 |
Q |
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| T |
52287533 |
aataccttttgaattttgatgcagtgattgcctagcacaggagcatcaacatatgtcaggtgtgaagcttgagtttgtttgacatagacctatcttattt |
52287434 |
T |
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| Q |
218 |
gacaaacttgtaaactagtttgtggttactcttggtaaagctt |
260 |
Q |
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| T |
52287433 |
gacaaacttgtaaactaatttgtggttactcgtggtaaagctt |
52287391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 52 - 209
Target Start/End: Complemental strand, 802732 - 802575
Alignment:
| Q |
52 |
tttccatcatttgcttttcaaaattatccatgatagacaggaacaattgaaaggctcaaggtctaacaaaccaaataccttttgatgcagtgattgcata |
151 |
Q |
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| T |
802732 |
tttccatcttttgcttttcaaaattatccatgatagacaggagcaattgaaagcctcaagttctaacaaaccaaatagctgtcaatgcagcaattgaata |
802633 |
T |
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| Q |
152 |
gcacaggagcatcaacataggtcaggtgtgaagcttgagtttgtttgacatagactta |
209 |
Q |
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| T |
802632 |
acacaggagcaccaatatatgtgaggtgcaaagcttgagtttgtttgacaaagactta |
802575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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