View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19599_low_13 (Length: 280)
Name: NF19599_low_13
Description: NF19599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19599_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 105 - 262
Target Start/End: Complemental strand, 9057933 - 9057776
Alignment:
| Q |
105 |
acaccaagtgatactttaactgcattaaaattttcattgttttgttcattaagaatatcaactttagcatatccatcttcataatctgaaggtctaacaa |
204 |
Q |
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| T |
9057933 |
acaccaagtgatactttaactgcattaaaatcttcattgttttgttcattaagaatatcaactttagcatatccatcttcataatctgaaggtctaacaa |
9057834 |
T |
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| Q |
205 |
tccttatctccacaacataatcatgaacagaacttcctttcccccacaatgtgcttcc |
262 |
Q |
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| T |
9057833 |
tccttatctccacaacataatcatgaacataacttcctttcccccacaatgtgcttcc |
9057776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 105 - 262
Target Start/End: Complemental strand, 9064057 - 9063900
Alignment:
| Q |
105 |
acaccaagtgatactttaactgcattaaaattttcattgttttgttcattaagaatatcaactttagcatatccatcttcataatctgaaggtctaacaa |
204 |
Q |
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|||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||||| ||||| | |
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| T |
9064057 |
acaccaagtgatactttagctgcattaaaatcttcattgttttgttcattaagaatctcaactttagcatatccatcgtcagaatccgaaggcctaacga |
9063958 |
T |
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| Q |
205 |
tccttatctccacaacataatcatgaacagaacttcctttcccccacaatgtgcttcc |
262 |
Q |
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|||||||||| |||||||| |||||||| | ||||||||||||| ||||||||||||| |
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| T |
9063957 |
tccttatctcgacaacatagtcatgaaccgcacttcctttccccgacaatgtgcttcc |
9063900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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