View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19599_low_15 (Length: 251)

Name: NF19599_low_15
Description: NF19599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19599_low_15
NF19599_low_15
[»] chr1 (2 HSPs)
chr1 (1-240)||(1718061-1718300)
chr1 (137-183)||(38483819-38483865)
[»] chr3 (13 HSPs)
chr3 (130-234)||(26647851-26647955)
chr3 (133-228)||(26654001-26654096)
chr3 (130-204)||(20033501-20033575)
chr3 (131-207)||(19951998-19952074)
chr3 (137-228)||(20015375-20015466)
chr3 (138-240)||(20007447-20007549)
chr3 (152-206)||(19849871-19849925)
chr3 (130-188)||(20006421-20006479)
chr3 (130-207)||(20035770-20035847)
chr3 (1-128)||(26648113-26648243)
chr3 (138-207)||(19813157-19813226)
chr3 (130-194)||(19956971-19957035)
chr3 (3-59)||(19952284-19952340)
[»] chr5 (3 HSPs)
chr5 (130-214)||(26354094-26354178)
chr5 (137-207)||(9815908-9815978)
chr5 (138-188)||(27472660-27472710)
[»] chr8 (1 HSPs)
chr8 (130-204)||(22685507-22685581)
[»] chr7 (2 HSPs)
chr7 (142-206)||(12582137-12582201)
chr7 (142-206)||(12521888-12521952)
[»] scaffold0038 (1 HSPs)
scaffold0038 (139-178)||(19562-19601)
[»] chr6 (1 HSPs)
chr6 (139-178)||(28219064-28219103)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 1718300 - 1718061
Alignment:
Q  1 ttgaaagttcgatgttatcttttgaaattgacctcttcagtggtaatatctttttataaccagctaaagatgacgaacattggttatttaaatgcttaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1718300 ttgaaagttcgatgttatcttttgaaattgacctcttcagtggtaatatcttttcataaccagctaaagatgacgaacattggttatttaaatgcttaga 1718201  T
Q  101 ttcatggattatgccaccacatttgtacctaagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagctttt 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1718200 ttcatggattatgccaccacacttgtacctaagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagctttt 1718101  T
Q  201 cctacatcagctctaggtttcgttgaacatgcacgtctct 240  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  1718100 cctacatcagctctaggtttcgttgaacatgcacatctct 1718061  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 38483865 - 38483819
Alignment:
Q  137 gtcaacaagattgggaggaaatccaggtggaacaccaacatcattac 183  Q
    |||||||||||  ||||||||| ||||||||||||||||||||||||    
T  38483865 gtcaacaagatctggaggaaattcaggtggaacaccaacatcattac 38483819  T

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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 130 - 234
Target Start/End: Complemental strand, 26647955 - 26647851
Alignment:
Q  130 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctctaggtttcgttgaaca 229  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||| |||||||||||  | ||||| ||||| ||||||     
T  26647955 taagagtgtcaacaagattgggaggaaaaccagggggaacaccaacatcattaccacttatgttatcttttcctacacaaactctatgtttccttgaact 26647856  T
Q  230 tgcac 234  Q
    |||||    
T  26647855 tgcac 26647851  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 133 - 228
Target Start/End: Complemental strand, 26654096 - 26654001
Alignment:
Q  133 gagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctctaggtttcgttgaac 228  Q
    ||||||||||||||||||||||||||||||||||||||| || |||   |||||||||| ||||||| ||||||| ||||||||||||| ||||||    
T  26654096 gagtgtcaacaagattgggaggaaatccaggtggaacactaaaatcgacaccacttttgctagctttccctacatgagctctaggtttccttgaac 26654001  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 20033501 - 20033575
Alignment:
Q  130 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttccta 204  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| |||||| |||||||    
T  20033501 taagagtgtcaacaagattgggaggaaatccaggtgcaacaccatcatcattactactttcgttagcatttccta 20033575  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 19952074 - 19951998
Alignment:
Q  131 aagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacat 207  Q
    |||||| ||||||  ||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  19952074 aagagtttcaacacaattggtaggaaatccaggtggaacaccaacaacattaccacttatgttagcttttcctacat 19951998  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 20015375 - 20015466
Alignment:
Q  137 gtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctctaggtttcgttgaac 228  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||  ||| |||||| |||||||| || || |||| ||||| ||||||    
T  20015375 gtcaacaagattgggacaaaatccaggtggaacaccaacatcattactgcttctgttagtttttcctagatgaggtctatgtttccttgaac 20015466  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 240
Target Start/End: Original strand, 20007447 - 20007549
Alignment:
Q  138 tcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctctaggtttcgttgaacatgcacgtc 237  Q
    |||||||||||||||||||||||||||||||||||||||||| | | |||| |||||| || |||||||| || |||| || || |||||  ||||| ||    
T  20007447 tcaacaagattgggaggaaatccaggtggaacaccaacatcaatccaacttctgttagattgtcctacatgagatctatgtctccttgaaattgcacttc 20007546  T
Q  238 tct 240  Q
    |||    
T  20007547 tct 20007549  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 19849925 - 19849871
Alignment:
Q  152 aggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctaca 206  Q
    |||||||||| |||||| ||||||||||||||||||| |||||||||||||||||    
T  19849925 aggaaatccaagtggaaaaccaacatcattaccacttctgttagcttttcctaca 19849871  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 20006421 - 20006479
Alignment:
Q  130 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccactt 188  Q
    |||||||| |||||||||||||||||||||||  |||||||||||||||| ||||||||    
T  20006421 taagagtgccaacaagattgggaggaaatccatctggaacaccaacatcaataccactt 20006479  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 20035770 - 20035847
Alignment:
Q  130 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacat 207  Q
    ||||||| |||||||||||||||| |||||||||  |||||| ||| ||| |||||||||||||   |||||||||||    
T  20035770 taagagtatcaacaagattgggagaaaatccaggctgaacacaaacttcaataccacttttgtttaattttcctacat 20035847  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 26648243 - 26648113
Alignment:
Q  1 ttgaaagttcgatgttatcttttgaaattgacctcttcagtggtaatatctttttataaccagctaaagatgacgaaca---ttggttatttaaatgctt 97  Q
    |||||||||| |||||||||  ||||| || ||| ||||||||||||||||||| ||||   ||| |||| |  |||||   |||||    |||||||||    
T  26648243 ttgaaagttcaatgttatctactgaaactggccttttcagtggtaatatcttttcataatatgctgaagaggctgaacaactttggtccaataaatgctt 26648144  T
Q  98 agattcatggattatgccaccacatttgtac 128  Q
    ||||||||||||| |||||||||| ||||||    
T  26648143 agattcatggattttgccaccacacttgtac 26648113  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 19813226 - 19813157
Alignment:
Q  138 tcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacat 207  Q
    ||||||||||||||||||||| ||||||||||| || || || |||||||| ||| |  |||||||||||    
T  19813226 tcaacaagattgggaggaaattcaggtggaacagcagcaccaataccacttctgtcaaattttcctacat 19813157  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 19957035 - 19956971
Alignment:
Q  130 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgtta 194  Q
    ||||||| |||||||||||||||| |||||||||| |||||| ||| ||  |||||||| |||||    
T  19957035 taagagtatcaacaagattgggagaaaatccaggttgaacacaaacctccataccacttctgtta 19956971  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 19952340 - 19952284
Alignment:
Q  3 gaaagttcgatgttatcttttgaaattgacctcttcagtggtaatatctttttataa 59  Q
    |||||||| ||| ||||||| |||| || ||| ||||||||||||||||||| ||||    
T  19952340 gaaagttcaatgctatctttcgaaactggccttttcagtggtaatatcttttcataa 19952284  T

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Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 130 - 214
Target Start/End: Original strand, 26354094 - 26354178
Alignment:
Q  130 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctct 214  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||| |||||| |||| ||||||    
T  26354094 taagaatgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaatacttctgttagtttttccaacatgagctct 26354178  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 9815978 - 9815908
Alignment:
Q  137 gtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacat 207  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||| |||| ||| |  |||||||||||    
T  9815978 gtcaacaagattgggaggaaattcaggtggaaaaccaacatcattacaacttctgtcaatttttcctacat 9815908  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 27472710 - 27472660
Alignment:
Q  138 tcaacaagattgggaggaaatccaggtggaacaccaacatcattaccactt 188  Q
    ||||||| ||||  ||| |||||| ||||||||||||||||||||||||||    
T  27472710 tcaacaacattgaaagggaatccaagtggaacaccaacatcattaccactt 27472660  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 22685507 - 22685581
Alignment:
Q  130 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttccta 204  Q
    |||| |||| ||||||||||  || |||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  22685507 taagtgtgttaacaagattgaaagaaaatccaggtggaacaccaacatcattaccacttctgttagctattccta 22685581  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 12582201 - 12582137
Alignment:
Q  142 caagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctaca 206  Q
    ||||||||||| |||||| |||  || ||||||||| | |||| |||||||||||||||||||||    
T  12582201 caagattgggacgaaatctaggctgaccaccaacatgaataccgcttttgttagcttttcctaca 12582137  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 12521952 - 12521888
Alignment:
Q  142 caagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctaca 206  Q
    |||||||| || |||||| |||  || ||||||||| | |||| |||||||||||||||||||||    
T  12521952 caagattgagacgaaatctaggctgaccaccaacatgaataccgcttttgttagcttttcctaca 12521888  T

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Target: scaffold0038 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 178
Target Start/End: Original strand, 19562 - 19601
Alignment:
Q  139 caacaagattgggaggaaatccaggtggaacaccaacatc 178  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  19562 caacaagaatgggaggaaatccaggtagaacaccaacatc 19601  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 178
Target Start/End: Original strand, 28219064 - 28219103
Alignment:
Q  139 caacaagattgggaggaaatccaggtggaacaccaacatc 178  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  28219064 caacaagaatgggaggaaatccaggtagaacaccaacatc 28219103  T

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