View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19599_low_2 (Length: 445)
Name: NF19599_low_2
Description: NF19599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19599_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 288
Target Start/End: Complemental strand, 6350905 - 6350621
Alignment:
| Q |
8 |
gagagagatgaagagaatagaagagggaaaattcattatttcactaactgagtttggtacaatggttaagc--ttagctatcatagactaactgcactct |
105 |
Q |
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| T |
6350905 |
gagagaaatgaagagaatagaagagggaaaattcattatttcactaactgagtttggtaaaatgcttaagcgtttacctaccatagactaactgcactct |
6350806 |
T |
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| Q |
106 |
atcataactctctctaactgccataacagaatctaa--ttatgtggcaagttacttagagctatgtcaagttacttgcttctcaagtaatctttcttctt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6350805 |
atcataactctctctaactgccataacagaatctaagcttatgtggcaagttagttagagctatgtcaagttacttgcttctcaagtaatctttcttctt |
6350706 |
T |
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| Q |
204 |
cttccattcttaacggttacaacaaaggttaaaaagagagagttggtaataaagaaattccattttctccatcgttttccctctt |
288 |
Q |
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| T |
6350705 |
cttccattcttaacggttacaacagaggttaaagagagagagttagtaataaagaaattccattttctccatcgttttccctctt |
6350621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 102 - 207
Target Start/End: Complemental strand, 35082093 - 35081986
Alignment:
| Q |
102 |
ctctatcataactctctctaactgccataacagaatctaa--ttatgtggcaagttacttagagctatgtcaagttacttgcttctcaagtaatctttct |
199 |
Q |
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| T |
35082093 |
ctctatcatagttctctctaactgccatagcagaatctaagcttatgtggcaagttagttagagctatgtcaagttacttgcttctcaagtaatctttct |
35081994 |
T |
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| Q |
200 |
tcttcttc |
207 |
Q |
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|||||||| |
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| T |
35081993 |
tcttcttc |
35081986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 35084244 - 35084185
Alignment:
| Q |
19 |
agagaatagaagagggaaaattcattatttcactaactgagtttggtacaatggttaagc |
78 |
Q |
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| T |
35084244 |
agagaatagaagagagaaaattcattatttcactaaccgagtttgttacaatggttaagc |
35084185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 11021744 - 11021815
Alignment:
| Q |
146 |
gtggcaagttacttagagctatgtcaagttacttgcttctcaagtaatctttcttcttcttccattcttaac |
217 |
Q |
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| T |
11021744 |
gtggcaagtttgttagagctatgtcaggttacttgctcctcaagtaatcttccatcttcttccattcttaac |
11021815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 6290214 - 6290254
Alignment:
| Q |
177 |
cttgcttctcaagtaatctttcttcttcttccattcttaac |
217 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||| |
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| T |
6290214 |
cttgctcctcaagtaatcttccttcttcttccattcttaac |
6290254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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