View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19599_low_3 (Length: 444)
Name: NF19599_low_3
Description: NF19599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19599_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 75 - 329
Target Start/End: Original strand, 42047462 - 42047716
Alignment:
| Q |
75 |
catgagctaacatagcttgaagggacttgaatacccttctccaactcattactcttcttcgaaccagcatttttgtgttgccgcaaaaaccaagaaatcg |
174 |
Q |
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| T |
42047462 |
catgagctaacatagcttgaagggacttgaatacccttctccaactcattactcttcttcgaaccagcatttttgtgttgccgcaaaaaccaagaaatcg |
42047561 |
T |
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| Q |
175 |
cagagactgaagagagagaaaggttggtggatgagagagacagaaacacgcgaatctatgttgaagaggatgatgaaatatcctcggaggttgcgaagaa |
274 |
Q |
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| T |
42047562 |
cagagactgaagagagagaaaggttggtggatgagagagacagaaacacgcgaatctacgttgaagaggatgatgaaatatcctcggaggttgcgaagaa |
42047661 |
T |
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| Q |
275 |
gatcaaagaagagtgtgcgtgactttggaacagacacaaacaaacacaactattg |
329 |
Q |
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| T |
42047662 |
gatcaaagaagagtgtgcgtgactttggaacagacacaaacaaacacaactattg |
42047716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 401 - 440
Target Start/End: Original strand, 42047782 - 42047821
Alignment:
| Q |
401 |
ctgcgtttctagttctgcaaaaggaaaaatattcttggac |
440 |
Q |
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| T |
42047782 |
ctgcgtttctagttctgcaaaaggaaaaatattgttggac |
42047821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 208 - 276
Target Start/End: Complemental strand, 49141076 - 49141007
Alignment:
| Q |
208 |
agagagacagaaacacgcgaatctatgttgaagaggatg-atgaaatatcctcggaggttgcgaagaaga |
276 |
Q |
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| T |
49141076 |
agagagacagaaacacatgtatctatgttaaagaggatgaatgaaaaatcctcggaggttatgaagaaga |
49141007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 207 - 329
Target Start/End: Complemental strand, 25532946 - 25532824
Alignment:
| Q |
207 |
gagagagacagaaacacgcgaatctatgttgaagaggatga-tgaaatatcctcggaggttgcgaagaagatcaaag-aagagtgtgcgtgactttggaa |
304 |
Q |
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|||||| ||||||||| ||| |||||||||||| ||||||| ||||| || |||||||||||||||||||| |||| || |||||| |||||||| ||| |
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| T |
25532946 |
gagagaaacagaaacatgcgtatctatgttgaaaaggatgaatgaaaaattctcggaggttgcgaagaaga--aaagcaaaagtgtgtgtgacttttgaa |
25532849 |
T |
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| Q |
305 |
cagacacaaacaaacacaactattg |
329 |
Q |
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| T |
25532848 |
tagacacaaacaaacacaattattg |
25532824 |
T |
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