View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19599_low_5 (Length: 426)
Name: NF19599_low_5
Description: NF19599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19599_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 20 - 411
Target Start/End: Complemental strand, 48101562 - 48101168
Alignment:
| Q |
20 |
gcaagcttttttattgtcatagtatagaactct--atattataaatccacttgaatgattccaaatcaagtgttttatgtcaataaaaatttgtcaaatg |
117 |
Q |
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| T |
48101562 |
gcaagtttttttattgtcatagtatagaactctgtatattataaatccacttgaatgattccaaatcaagtgttttatgtcaataaaaatttgtcaaatg |
48101463 |
T |
|
| Q |
118 |
ctccaga-ttcttagacattgcacaaacttacttatgttaccaatgcctacaaacaaagcagtgtgtgacagaacctaagagggcacaatatgggggagg |
216 |
Q |
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| T |
48101462 |
ctccagaattcttagacattgcacaaacttacttgtgttgccaatgcctataaacaaagcagtgtgtgacagaacctaagagggcacaatatgggggagg |
48101363 |
T |
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| Q |
217 |
cattacagtaaatccaggatttgatcacaacataaatggctggaaagtgtttggaaatggaacaatcgaggaacgagtatcaaacaatggaaatagattc |
316 |
Q |
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| T |
48101362 |
cattacagtaaatccaggatttgatcacaacataaatggctggaaagtgtttggaaatggaacaatcgaggaacgagtatcaaacaacggaaatagattc |
48101263 |
T |
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| Q |
317 |
attgttgccagcaacagaacacaaccattggatagtttttcacagaaggtccaactgaagaaaggaatgatatatactttttctggtaacctatg |
411 |
Q |
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| T |
48101262 |
attgttgccagcaacagaacacaaccattggatagtttttcacagaaggtccaactgaagaaaggaatgatatatactttttctggtaacctatg |
48101168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 172 - 406
Target Start/End: Complemental strand, 48064154 - 48063920
Alignment:
| Q |
172 |
aaagcagtgtgtgacagaacctaagagggcacaatatgggggaggcattacagtaaatccaggatttgatcacaacataaatggctggaaagtgtttgga |
271 |
Q |
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| T |
48064154 |
aaagcagtgtgtgacagaacctaagagggcacaatatggaggaggcattatagtaaatccaggatttgatcacaacataaagggttggagagtgtttgga |
48064055 |
T |
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| Q |
272 |
aatggaacaatcgaggaacgagtatcaaacaatggaaatagattcattgttgccagcaacagaacacaaccattggatagtttttcacagaaggtccaac |
371 |
Q |
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| T |
48064054 |
aatggaacaatcgaggaacgaatatcaaatgatgaaaatagattcattgttgctagcaacagaagacaaacattggatggtttctcacagaaggtccaac |
48063955 |
T |
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| Q |
372 |
tgaagaaaggaatgatatatactttttctggtaac |
406 |
Q |
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| T |
48063954 |
tgaagaaaggaatgatatacatgttttctggtaac |
48063920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 176 - 411
Target Start/End: Complemental strand, 48068806 - 48068571
Alignment:
| Q |
176 |
cagtgtgtgacagaacctaagagggcacaatatgggggaggcattacagtaaatccaggatttgatcacaacataaatggctggaaagtgtttggaaatg |
275 |
Q |
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|||||||| |||||||| |||| ||||||||||| || ||||||| ||||||||||||||||||||||||||| || | |||| ||||||| ||| |
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| T |
48068806 |
cagtgtgtcccagaacctcagagagcacaatatggaggtggcattatagtaaatccaggatttgatcacaacattaaggattggacggtgtttgagcatg |
48068707 |
T |
|
| Q |
276 |
gaacaatcgaggaacgagtatcaaacaatggaaatagattcattgttgccagcaacagaacacaaccattggatagtttttcacagaaggtccaactgaa |
375 |
Q |
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| T |
48068706 |
gaacaatcaaggaacgaacatcaaatgatggaaatacatttattgttgtcagcaacagaacacaaccattagatagtttatcacaaaaagtccaactgga |
48068607 |
T |
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| Q |
376 |
gaaaggaatgatatatactttttctggtaacctatg |
411 |
Q |
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| T |
48068606 |
gaaagaaatgatatatattttttctggtaacctatg |
48068571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 124 - 406
Target Start/End: Complemental strand, 48107871 - 48107589
Alignment:
| Q |
124 |
attcttagacattgcacaaacttacttatgttaccaatgcctacaaacaaagcagtgtgtgacagaacctaagagggcacaatatgggggaggcattaca |
223 |
Q |
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||||||| |||||||| ||| || ||| |||| |||||||| || ||| |||||| ||| ||||||| | || ||||||||||| || || |||| | |
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| T |
48107871 |
attcttaaacattgcataaattttcttgtgttgtcaatgccttggaataaaacagtgtatgaaagaacctcaaagagcacaatatggagggggaattata |
48107772 |
T |
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| Q |
224 |
gtaaatccaggatttgatcacaacataaatggctggaaagtgtttggaaatggaacaatcgaggaacgagtatcaaacaatggaaatagattcattgttg |
323 |
Q |
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| T |
48107771 |
gtaaattccggatttgatcacaacatagagggttggacagtatttggaaatggaacaattgaggaacgtatatcaaatgatggaaatagattcattgttg |
48107672 |
T |
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| Q |
324 |
ccagcaacagaacacaaccattggatagtttttcacagaaggtccaactgaagaaaggaatgatatatactttttctggtaac |
406 |
Q |
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||||||| ||||||||| |||| |||||||||||||| | ||| || || |||||||| |||||||||||||||| |||||| |
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| T |
48107671 |
ccagcaaaagaacacaatcattagatagtttttcacaaacggttcagctagagaaaggattgatatatactttttcaggtaac |
48107589 |
T |
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