View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19599_low_6 (Length: 417)
Name: NF19599_low_6
Description: NF19599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19599_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 13 - 401
Target Start/End: Original strand, 12825924 - 12826312
Alignment:
| Q |
13 |
aaaatccctgactcttccaaaccccacctccacctatcctcttcatgagaccacctcatattctccaaatcattcaagagactcacaaatagttgctcct |
112 |
Q |
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||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12825924 |
aaaatccctaactcttccaaaccccaccgccacctatcctcctcatgagaccacctcatattctccaaatcattcaagagactcacaaatagttgctcct |
12826023 |
T |
|
| Q |
113 |
cccaaccaaaaaactccattctccactcaaaatgccacttcgttaaggaaccaaccgcctcccctatctcccccacacacaactccttttggtttgacat |
212 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12826024 |
cccaaccaaaaaactcccttctccactcgaaatgccacttcgttaaggaaccaaccgcctcccctatctcccccacacacaactccttttggtttgacat |
12826123 |
T |
|
| Q |
213 |
tgagtaaagtctaggatatttactcctaaacgtccggtctactcgccacttgacaatccaaaaactagaagtcaatccattaccaatagacaattccgaa |
312 |
Q |
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||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12826124 |
tgagtaaagtctaggatatttactcttaaacgtccggtccactcgccacttgacattccaaaaactagaagtcaatccattaccaatagacaattccgaa |
12826223 |
T |
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| Q |
313 |
tttaaccactcttgaaaaccaaagttatctaaattgaccacatctttccacctccaatttggagccattcgtccctccaacgtactagt |
401 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
12826224 |
tttaatcactcttgaaaaccaaagttatctaaattgaccacatctttccacctccaatttggagccattcgtccctccaacatactagt |
12826312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 22 - 248
Target Start/End: Complemental strand, 47819766 - 47819540
Alignment:
| Q |
22 |
gactcttccaaaccccacctccacctatcctcttcatgagaccacctcatattctccaaatcattcaagagactcacaaatagttgctcctcccaaccaa |
121 |
Q |
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||||||||||| |||||||||||||||||||| |||| ||||||||||||| |||||||||| ||| ||| || | | |||||||||||||||| ||| |
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| T |
47819766 |
gactcttccaacccccacctccacctatcctccacatgcgaccacctcatatcctccaaatcacccaaaagattccctattagttgctcctcccaatcaa |
47819667 |
T |
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| Q |
122 |
aaaactccattctccactcaaaatgccacttcgttaaggaaccaaccgcctcccctatctcccccacacacaactccttttggtttgacattgagtaaag |
221 |
Q |
| |
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|||||||| | |||||||||||||| |||| |||| | || ||||| ||||||||||||| ||||| || ||||||||| ||||| || ||| | || |
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| T |
47819666 |
aaaactccctcctccactcaaaatgtcactccgttgaagagccaactacctcccctatctctcccaccaacccctccttttgatttgaaatagagaagag |
47819567 |
T |
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| Q |
222 |
tctaggatatttactcctaaacgtccg |
248 |
Q |
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|||||| |||||||||||||||||||| |
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| T |
47819566 |
tctagggtatttactcctaaacgtccg |
47819540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 28571318 - 28571269
Alignment:
| Q |
16 |
atccctgactcttccaaaccccacctccacctatcctcttcatgagacca |
65 |
Q |
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||||| ||||| |||||||||||| |||||||||| || ||||||||||| |
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| T |
28571318 |
atccccgactcctccaaaccccacttccacctatcttcctcatgagacca |
28571269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 24189112 - 24188880
Alignment:
| Q |
16 |
atccctgactcttccaaaccccacctccacctatcctcttcatgagaccacctcatattctccaaatcattcaagagactcacaaatagttgctcctccc |
115 |
Q |
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||||| ||||| || ||||||||| |||||||||| || ||||||||||| |||| |||||||| ||| ||| | | || ||||||||||||| |
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| T |
24189112 |
atccccgactcctctaaaccccacttccacctatcttcctcatgagaccaagtcatgccttccaaatctaccaatagatttgcgaagagttgctcctccc |
24189013 |
T |
|
| Q |
116 |
aaccaaaaaactccattctccactcaaaatgccacttcgttaaggaaccaaccgcctcccctatctcccccacacacaactccttttggtttgacattga |
215 |
Q |
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|| ||||||| ||| |||||||||||||||||||| | || | || || ||| |||||||||| || ||||| | || ||||||||||| || || |
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| T |
24189012 |
aatcaaaaaaatcccgtctccactcaaaatgccactcccttgaagagcctaccacctcccctatgtcacccaccattgaatctttttggtttgagatcga |
24188913 |
T |
|
| Q |
216 |
gtaaagtctaggatatttactcctaaacgtccg |
248 |
Q |
| |
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||||||| |||| |||||||||||| ||||| |
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| T |
24188912 |
aaaaagtcttggatgtttactcctaaaagtccg |
24188880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 188
Target Start/End: Original strand, 42749392 - 42749487
Alignment:
| Q |
93 |
actcacaaatagttgctcctcccaaccaaaaaactccattctccactcaaaatgccacttcgttaaggaaccaaccgcctcccctatctcccccac |
188 |
Q |
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|||| |||| ||||||||||||||| ||||||||||| |||||| ||||| | |||| |||||| | |||| || ||||||||||||| ||||| |
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| T |
42749392 |
actcgcaaaaagttgctcctcccaatcaaaaaactcccatctccaatcaaagttccacaccgttaaagcaccatcctcctcccctatctctcccac |
42749487 |
T |
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