View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19599_low_9 (Length: 358)

Name: NF19599_low_9
Description: NF19599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19599_low_9
NF19599_low_9
[»] chr7 (10 HSPs)
chr7 (1-342)||(6350144-6350485)
chr7 (10-103)||(33387544-33387637)
chr7 (27-103)||(13072043-13072119)
chr7 (7-103)||(21420055-21420151)
chr7 (1-43)||(44832763-44832805)
chr7 (14-60)||(48614137-48614183)
chr7 (1-50)||(553569-553618)
chr7 (1-50)||(32198925-32198974)
chr7 (7-103)||(23581197-23581293)
chr7 (2-50)||(31251965-31252013)
[»] chr4 (4 HSPs)
chr4 (1-105)||(20628655-20628759)
chr4 (1-71)||(31854156-31854226)
chr4 (1-50)||(13502488-13502537)
chr4 (1-71)||(5290661-5290731)
[»] chr2 (5 HSPs)
chr2 (1-70)||(18829830-18829899)
chr2 (1-72)||(15441489-15441560)
chr2 (204-236)||(8987244-8987276)
chr2 (13-53)||(30325429-30325469)
chr2 (1-73)||(40654141-40654213)
[»] chr5 (2 HSPs)
chr5 (17-103)||(23034913-23034998)
chr5 (1-44)||(8788758-8788801)
[»] chr6 (1 HSPs)
chr6 (3-72)||(28932958-28933027)
[»] chr3 (6 HSPs)
chr3 (10-103)||(5177104-5177197)
chr3 (1-81)||(8257715-8257795)
chr3 (1-48)||(19815004-19815052)
chr3 (7-49)||(10842541-10842583)
chr3 (1-50)||(218796-218845)
chr3 (1-99)||(38415683-38415783)
[»] chr8 (2 HSPs)
chr8 (7-103)||(33947257-33947353)
chr8 (10-103)||(33532980-33533073)


Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 6350485 - 6350144
Alignment:
Q  1 aataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgaatattatagagtcaatttcaacaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6350485 aataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaat 6350386  T
Q  101 taatcgaatttttattcacttcttgtccatttcttatcactctaacgtttgtagtgattatacctctagaggtcacttgacacatcttatagaaagctta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6350385 taatcgaatttttattcacttcttgtccatttcttatcactctaacgtttgtagtgattatacctctagaggtcacttgacacatcttatagaaagctta 6350286  T
Q  201 ccgcgaccacaaagttgtttggtttgggtgatttgatatggtttcaagctattttcacatagagaaaattcttcaatttgttgcaaagatcaaacaagca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6350285 ccgcgaccacaaagttgtttggtttgggtgatttgatatggtttcaagctattttcacatagagaaaattcttcaatttgttgcaaagatcaaacaagca 6350186  T
Q  301 caaactcacccaaagactcacaaaattactcagggacactaa 342  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6350185 caaactcacccaaagactcacaaaattactcagggacactaa 6350144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 33387544 - 33387637
Alignment:
Q  10 aatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgaatattatagagtcaatttcaacaattaa 103  Q
    |||||||||||||| | ||| ||||||||||||| |||||| ||  |||||||| ||||||| || |||||| |  ||||||||  ||||||||    
T  33387544 aatctcaaattacagggttataatatgtgttttttattttataggatcattgtttagacttcatgtatattacaaggtcaattttgacaattaa 33387637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 13072119 - 13072043
Alignment:
Q  27 ttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgaatattatagagtcaatttcaacaattaa 103  Q
    ||||||||||||||||| ||||||  | |||||| |||||||||||   |||||| || ||||||||||| ||||||    
T  13072119 ttagaatatgtgttttttattttacggggtcatttttcagacttcgcatatattacagggtcaatttcaataattaa 13072043  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 21420151 - 21420055
Alignment:
Q  7 aagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgaatattatagagtcaatttcaacaattaa 103  Q
    |||||| |||||||||| | ||||||| | |||||||  ||||| ||| ||||| ||||||||||  | |||||| |  ||||||||||||||||||    
T  21420151 aagaatatcaaattacagggttagaatctatgtttttttttttatagaatcatttttcagacttcacgtatattacaaggtcaatttcaacaattaa 21420055  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 44832763 - 44832805
Alignment:
Q  1 aataataagaatctcaaattacatgtttagaatatgtgttttt 43  Q
    ||||||||||||||||||||||| | ||| |||||||||||||    
T  44832763 aataataagaatctcaaattacagggttaaaatatgtgttttt 44832805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 48614137 - 48614183
Alignment:
Q  14 tcaaattacatgtttagaatatgtgtttttaattttaaagagtcatt 60  Q
    ||||||||||| |||| |||||||||||||| ||||| |||||||||    
T  48614137 tcaaattacatatttaaaatatgtgtttttatttttacagagtcatt 48614183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 553569 - 553618
Alignment:
Q  1 aataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 50  Q
    ||||| || ||| ||||||||||||  |||||||||||||||||||||||    
T  553569 aataagaataatttcaaattacatgactagaatatgtgtttttaatttta 553618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 32198974 - 32198925
Alignment:
Q  1 aataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 50  Q
    ||||| ||||||||||||||| | | |||||||||||||||||| |||||    
T  32198974 aataagaagaatctcaaattatagggttagaatatgtgtttttattttta 32198925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 23581293 - 23581197
Alignment:
Q  7 aagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgaatattatagagtcaatttcaacaattaa 103  Q
    |||| |||||||||||| | ||||||||||| |||||||||||| |  |||||| |||| || | | |||| ||  || |||||||| |||||||||    
T  23581293 aagattctcaaattacagggttagaatatgtatttttaattttacaaggtcatttttcaaacatagcgaattttccagggtcaatttaaacaattaa 23581197  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 31252013 - 31251965
Alignment:
Q  2 ataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 50  Q
    ||||||||||| ||||| || ||| ||||||||||||||||| ||||||    
T  31252013 ataataagaatatcaaaatatatggttagaatatgtgttttttatttta 31251965  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 20628759 - 20628655
Alignment:
Q  1 aataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgaatattatagagtcaatttcaacaat 100  Q
    |||||||||||| |||||||||| | ||  ||||||||||||| |||||| | ||||||| ||||||||||  | |||||| || |||||||||||||||    
T  20628759 aataataagaatatcaaattacaaggttttaatatgtgttttttattttacatagtcatttttcagacttcccgtatattacagggtcaatttcaacaat 20628660  T
Q  101 taatc 105  Q
     ||||    
T  20628659 caatc 20628655  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 31854156 - 31854226
Alignment:
Q  1 aataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttc 71  Q
    |||||||||||| |||||||||| | ||| ||||| ||||||| |||||| || |||||| ||||||||||    
T  31854156 aataataagaatatcaaattacaggattataatatatgttttttattttacagggtcatttttcagacttc 31854226  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 13502488 - 13502537
Alignment:
Q  1 aataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 50  Q
    ||||| ||||||||||||||| ||||||| ||||| ||||||||||||||    
T  13502488 aataagaagaatctcaaattatatgtttaaaatatatgtttttaatttta 13502537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 5290731 - 5290661
Alignment:
Q  1 aataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttc 71  Q
    ||||| ||||||||||||||||| ||||| ||||||| |||||| ||||| || || ||| || |||||||    
T  5290731 aataagaagaatctcaaattacaagtttaaaatatgtctttttatttttatagcgttattttttagacttc 5290661  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 18829830 - 18829899
Alignment:
Q  1 aataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagactt 70  Q
    ||||||||||||||||||||||| | |||||||||||| |||| |||||| |  |||||| |||||||||    
T  18829830 aataataagaatctcaaattacagggttagaatatgtgctttttattttacaatgtcatttttcagactt 18829899  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 15441560 - 15441489
Alignment:
Q  1 aataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcg 72  Q
    |||||||||||| ||||||||||   ||||||||| || |||| ||||||||| || ||| |||||||||||    
T  15441560 aataataagaatatcaaattacagagttagaatatatggtttttattttaaagggttatttttcagacttcg 15441489  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 8987276 - 8987244
Alignment:
Q  204 cgaccacaaagttgtttggtttgggtgatttga 236  Q
    |||||||| ||||||||||||||||||||||||    
T  8987276 cgaccacatagttgtttggtttgggtgatttga 8987244  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 30325469 - 30325429
Alignment:
Q  13 ctcaaattacatgtttagaatatgtgtttttaattttaaag 53  Q
    ||||||||||| | ||||||||||||||| |||||||||||    
T  30325469 ctcaaattacaagattagaatatgtgtttataattttaaag 30325429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 40654141 - 40654213
Alignment:
Q  1 aataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgt 73  Q
    ||||||||  ||||||||||| | | |||||||||||| |||| | |||| ||||| ||| ||||||||||||    
T  40654141 aataataaacatctcaaattagagggttagaatatgtgatttttagtttacagagttatttttcagacttcgt 40654213  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 23034913 - 23034998
Alignment:
Q  17 aattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgaatattatagagtcaatttcaacaattaa 103  Q
    ||||||||| | | ||||||| |||||| ||||| ||||||||| ||||||||||||| |||||| ||  |||||||||| ||||||    
T  23034913 aattacatggtcataatatgtattttta-ttttacagagtcatttttcagacttcgtgtatattacaggatcaatttcaataattaa 23034998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 8788758 - 8788801
Alignment:
Q  1 aataataagaatctcaaattacatgtttagaatatgtgttttta 44  Q
    |||||||||||||||||||||||||  || ||||||||||||||    
T  8788758 aataataagaatctcaaattacatggctaaaatatgtgttttta 8788801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 28932958 - 28933027
Alignment:
Q  3 taataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcg 72  Q
    |||||||||| |||||||||| | ||| ||||||||||||| |||||| ||  ||||| |||||||||||    
T  28932958 taataagaatttcaaattacagggttaaaatatgtgttttttattttacaggttcatttttcagacttcg 28933027  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 103
Target Start/End: Complemental strand, 5177197 - 5177104
Alignment:
Q  10 aatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgaatattatagagtcaatttcaacaattaa 103  Q
    ||||||||||||||||  |  ||||||||||||| |||||| ||| ||||| |||||||||| ||  ||||| |  |||||||| |||||||||    
T  5177197 aatctcaaattacatgggtgaaatatgtgttttttattttacagattcatttttcagacttcatgtttattacatggtcaatttgaacaattaa 5177104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 8257715 - 8257795
Alignment:
Q  1 aataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgaatatta 81  Q
    ||||||||||||||  ||||||||| | | ||||||||||||| |||||| || |||||| || | |||||| ||||||||    
T  8257715 aataataagaatcttgaattacatggtcaaaatatgtgttttttattttacagggtcattttttaaacttcgcgaatatta 8257795  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 19815004 - 19815052
Alignment:
Q  1 aataataagaatctcaaattacatgtttagaatatgt-gtttttaattt 48  Q
    ||||| ||||||||||||||||||| ||||||||||| |||||||||||    
T  19815004 aataacaagaatctcaaattacatggttagaatatgtggtttttaattt 19815052  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 10842541 - 10842583
Alignment:
Q  7 aagaatctcaaattacatgtttagaatatgtgtttttaatttt 49  Q
    |||||| |||||||||||| |||||||||||||||||| ||||    
T  10842541 aagaatatcaaattacatggttagaatatgtgtttttattttt 10842583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 218845 - 218796
Alignment:
Q  1 aataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 50  Q
    ||||||||||||| ||||||||| | ||| ||||||||||||| ||||||    
T  218845 aataataagaatcccaaattacagggttataatatgtgttttttatttta 218796  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 38415683 - 38415783
Alignment:
Q  1 aataataagaatctcaaattacatgtttagaatatgtg--tttttaattttaaagagtcattgttcagacttcgtgaatattatagagtcaatttcaaca 98  Q
    ||||| ||||||||||||||||| | ||| ||||||||  ||||| |||||| |  |||||| ||||||| || || |||||| || |||||||| ||||    
T  38415683 aataagaagaatctcaaattacagggttaaaatatgtgttttttttattttacaatgtcatttttcagacatcatgtatattacagcgtcaatttgaaca 38415782  T
Q  99 a 99  Q
    |    
T  38415783 a 38415783  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 33947353 - 33947257
Alignment:
Q  7 aagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgaatattatagagtcaatttcaacaattaa 103  Q
    ||||||||||||||||| | ||| |||| ||| ||||| || || ||||||||| |||||||||||   |||||| |  |||||||| |||||||||    
T  33947353 aagaatctcaaattacaaggttaaaatacgtgcttttatttgtacagagtcatttttcagacttcgcctatattacatggtcaatttgaacaattaa 33947257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 33532980 - 33533073
Alignment:
Q  10 aatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgaatattatagagtcaatttcaacaattaa 103  Q
    |||||||||||||| | ||| ||| | || ||||| ||||| | ||||||| || |||||||||| | |||||||  ||||||| |||||||||    
T  33532980 aatctcaaattacaaggttataatttatgattttatttttacatagtcattttttagacttcgtgtacattataggatcaatttgaacaattaa 33533073  T

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