View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1959_high_6 (Length: 215)
Name: NF1959_high_6
Description: NF1959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1959_high_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 3598536 - 3598322
Alignment:
| Q |
1 |
ttgtcatcttcacctgctttgtctttcatagcactttcttttccatcatcacctgctgtatcatttatagaattttcggcagcatgtgctttatcattca |
100 |
Q |
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| T |
3598536 |
ttgtcatcttcacctgctttgtctttcatagcactttcttttccatcatcacctgctgtatcatttatagaattttcggcagcatgtgctttatcattca |
3598437 |
T |
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| Q |
101 |
ctaaaacatccgaaccacctaaagtgtcatttacggggttttctgcaccaactgcttggtcttttgcaacatttacaggattttctgccccacctgcttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3598436 |
ctaaaacatccgaaccacctaaagtgtcatttacggggttttctgcaccaactgcttggtcttttgcaacatttacaggattttctgccccacctgcttg |
3598337 |
T |
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| Q |
201 |
attgcttataggatt |
215 |
Q |
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||||||||||||||| |
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| T |
3598336 |
attgcttataggatt |
3598322 |
T |
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