View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1959_low_1 (Length: 648)

Name: NF1959_low_1
Description: NF1959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1959_low_1
NF1959_low_1
[»] chr8 (4 HSPs)
chr8 (37-161)||(43801949-43802073)
chr8 (30-159)||(43812511-43812640)
chr8 (175-248)||(36318850-36318923)
chr8 (166-248)||(4988425-4988507)
[»] chr4 (11 HSPs)
chr4 (473-636)||(51722411-51722570)
chr4 (166-252)||(19114134-19114220)
chr4 (166-252)||(30310144-30310230)
chr4 (166-241)||(48031509-48031584)
chr4 (166-248)||(7473105-7473187)
chr4 (166-248)||(8934800-8934882)
chr4 (166-248)||(19644689-19644771)
chr4 (166-248)||(33988128-33988210)
chr4 (272-342)||(51722161-51722231)
chr4 (177-248)||(29554100-29554171)
chr4 (398-447)||(51722323-51722372)
[»] chr2 (4 HSPs)
chr2 (166-252)||(15017374-15017460)
chr2 (173-252)||(5325464-5325543)
chr2 (166-248)||(10978363-10978446)
chr2 (177-252)||(22725790-22725865)
[»] chr6 (6 HSPs)
chr6 (166-248)||(5086383-5086465)
chr6 (166-248)||(33019679-33019761)
chr6 (166-247)||(503892-503973)
chr6 (166-248)||(33639616-33639698)
chr6 (175-248)||(8263953-8264026)
chr6 (166-248)||(19227212-19227294)
[»] chr7 (7 HSPs)
chr7 (173-248)||(6970710-6970785)
chr7 (166-236)||(21439281-21439351)
chr7 (166-248)||(25923769-25923851)
chr7 (177-248)||(17804655-17804726)
chr7 (166-248)||(34518964-34519046)
chr7 (166-248)||(45987748-45987830)
chr7 (208-248)||(33796727-33796767)
[»] chr5 (3 HSPs)
chr5 (189-252)||(11575049-11575112)
chr5 (166-248)||(5415505-5415587)
chr5 (174-248)||(22095610-22095684)
[»] chr3 (2 HSPs)
chr3 (166-252)||(20894110-20894196)
chr3 (166-248)||(51144763-51144845)
[»] scaffold0108 (1 HSPs)
scaffold0108 (166-248)||(10607-10689)
[»] chr1 (4 HSPs)
chr1 (173-248)||(34709275-34709350)
chr1 (166-248)||(24314718-24314800)
chr1 (166-248)||(25505353-25505435)
chr1 (177-248)||(43810519-43810590)


Alignment Details
Target: chr8 (Bit Score: 121; Significance: 1e-61; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 37 - 161
Target Start/End: Original strand, 43801949 - 43802073
Alignment:
Q  37 aattgtatatccaatcatgaccgaaattatctagcttgtattgtcagggattaaaaaggacgtacaagagaattggtaaagcaatagaccaagtgttgga 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43801949 aattgtatatccaatcatgaccgaaattatctagcttgtattgtcagggattaaaaaggaagtacaagagaattggtaaagcaatagaccaagtgttgga 43802048  T
Q  137 gaagataattaaggaacatgaacga 161  Q
    |||||||||||||||||||||||||    
T  43802049 gaagataattaaggaacatgaacga 43802073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 30 - 159
Target Start/End: Original strand, 43812511 - 43812640
Alignment:
Q  30 ttaattaaattgtatatccaatcatgaccgaaattatctagcttgtattgtcagggattaaaaaggacgtacaagagaattggtaaagcaatagaccaag 129  Q
    ||||||||  || ||||||||||||| || ||||||| |||||| |||||||||||||||||||| | |||||||| || || ||||||||| || ||||    
T  43812511 ttaattaacctgcatatccaatcatggcctaaattatttagcttttattgtcagggattaaaaagaaggtacaagaaaactgctaaagcaatggatcaag 43812610  T
Q  130 tgttggagaagataattaaggaacatgaac 159  Q
    |||| ||||||||||||||||||| |||||    
T  43812611 tgtttgagaagataattaaggaacgtgaac 43812640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 36318923 - 36318850
Alignment:
Q  175 aaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 248  Q
    |||||||||| ||||| ||| |||||  ||| ||||||||||||||||||||| |||||||||||||| |||||    
T  36318923 aaaggagtaatagaatcattgaaacacatattgttacgttcagtccataagacgcagacacagagaagtcaaat 36318850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 166 - 248
Target Start/End: Complemental strand, 4988507 - 4988425
Alignment:
Q  166 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 248  Q
    |||||| | |||||||||| |||||  || |||||  ||| |||||||||||||||||| |||||| ||||  ||||||||||    
T  4988507 aacctgggtaaaggagtaatagaatcgttgaaacacatattgttacgttcagtccataaaacccaggcacaacgaagccaaat 4988425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 473 - 636
Target Start/End: Original strand, 51722411 - 51722570
Alignment:
Q  473 ttattattgcaggtctgctcttttagggattcatatgagaagttcaagaaagcaggagcagaggttgttggaataagtcgcgatgattcttcggctcaga 572  Q
    ||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | || ||||||||  |||| |    
T  51722411 ttattattgcaggcctgtgcttttagggattcatatgagaagttcaagaaagcaggagcagaggttgttgggataagtggagacgattcttcctctcaca 51722510  T
Q  573 tggtaaaactcagaattttcactgcataatttttgtacctatttattaattaaccaatgcattg 636  Q
     ||||||||||||||||||||||||||||| || || ||     ||||||||||||||||||||    
T  51722511 aggtaaaactcagaattttcactgcataatattcgtgcc----aattaattaaccaatgcattg 51722570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 19114134 - 19114220
Alignment:
Q  166 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaattagt 252  Q
    |||||| |||||||||| |||  |||||||||||| |||| |||| ||||||||||||||||||||||||| || ||| ||||||||    
T  19114134 aacctgggcaaaggagtcacatgattattaaaacacctattgttatgttcagtccataagacccagacacaaagtagcaaaattagt 19114220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 30310144 - 30310230
Alignment:
Q  166 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaattagt 252  Q
    |||||| |||||||||| | |  |||||||||||| |||| |||||||||||||||||||||  |||||||||| ||||||||||||    
T  30310144 aacctgggcaaaggagtcatatgattattaaaacacctattgttacgttcagtccataagacagagacacagagtagccaaattagt 30310230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 48031584 - 48031509
Alignment:
Q  166 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaa 241  Q
    |||||| |||||||||||| ||||||||  ||||| ||||  |||||||||||||||||||||||| || ||||||    
T  48031584 aacctgggcaaaggagtaatagaattatcgaaacacctattattacgttcagtccataagacccaggcaaagagaa 48031509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 7473105 - 7473187
Alignment:
Q  166 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 248  Q
    |||||| | |||||||||| ||||| ||| |||||  ||| |||||||||| ||||||||||||||||||| ||||| |||||    
T  7473105 aacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttcattccataagacccagacacaaagaagtcaaat 7473187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 8934800 - 8934882
Alignment:
Q  166 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 248  Q
    |||||| | |||||||||| | ||| ||| |||||  ||| ||||||||||||||||||||||||| |||| |||||||||||    
T  8934800 aacctgggtaaaggagtaataaaatcattgaaacacatattgttacgttcagtccataagacccaggcacaaagaagccaaat 8934882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 19644689 - 19644771
Alignment:
Q  166 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 248  Q
    |||||| | |||||||||| ||||| ||| |||||  ||| |||||||||||||||||| |||||| |||| |||||||||||    
T  19644689 aacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttcagtccataaaacccaggcacaaagaagccaaat 19644771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 248
Target Start/End: Complemental strand, 33988210 - 33988128
Alignment:
Q  166 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 248  Q
    |||||| | |||||||||| ||||| ||| |||||  |||  ||||||||||||||||| ||||||||||| |||||||||||    
T  33988210 aacctgggtaaaggagtaatagaatcattgaaacacatattattacgttcagtccataaaacccagacacaaagaagccaaat 33988128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 272 - 342
Target Start/End: Original strand, 51722161 - 51722231
Alignment:
Q  272 gcgttttagaattgctttatctttttagtttcaatccgcattagaagagttctcatgttttaaccaatatt 342  Q
    ||||||||||| |||||||||||||  |||||||||| ||| |||||||||||||  ||||| ||||||||    
T  51722161 gcgttttagaactgctttatcttttctgtttcaatccacatcagaagagttctcaaattttatccaatatt 51722231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 29554171 - 29554100
Alignment:
Q  177 aggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 248  Q
    |||||||| ||||||||| ||  | ||||  ||||||||||||||||| |||||| |||| |||||||||||    
T  29554171 aggagtaatagaattattgaacaacctattattacgttcagtccataatacccaggcacaaagaagccaaat 29554100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 447
Target Start/End: Original strand, 51722323 - 51722372
Alignment:
Q  398 catgaaattagattatgcacagtagagcaaatacaataaatcatttccat 447  Q
    |||| ||| |||||||||| ||||||||||||||||||||  ||||||||    
T  51722323 catggaatcagattatgcagagtagagcaaatacaataaactatttccat 51722372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 15017374 - 15017460
Alignment:
Q  166 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaattagt 252  Q
    |||||| |||||||||| |||  |||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  15017374 aacctgggcaaaggagtcacatgattattaaaacacctattgttacgttcagtccataagacccagacacagagtagccaaattagt 15017460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 5325464 - 5325543
Alignment:
Q  173 gcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaattagt 252  Q
    |||||| ||||||  ||||||||||||| |||| |||||||||| ||||||||| |||||||||||| ||||||||||||    
T  5325464 gcaaagaagtaacgtaattattaaaacacctattgttacgttcaatccataagatccagacacagagtagccaaattagt 5325543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 166 - 248
Target Start/End: Complemental strand, 10978446 - 10978363
Alignment:
Q  166 aacctgtgcaaaggagtaacagaattattaaaacatctata-gttacgttcagtccataagacccagacacagagaagccaaat 248  Q
    |||||| | |||||||||| ||||| ||| |||||  |||  ||||||| ||||||||||||||||||||||||||||||||||    
T  10978446 aacctgggtaaaggagtaatagaatcattgaaacacatatttgttacgtccagtccataagacccagacacagagaagccaaat 10978363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 22725865 - 22725790
Alignment:
Q  177 aggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaattagt 252  Q
    |||||||| || |||||||||  | |||| ||||| ||||||||||||||||||  ||||  ||||||||||||||    
T  22725865 aggagtaatagtattattaaataacctattgttacattcagtccataagacccaagcacaaggaagccaaattagt 22725790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 166 - 248
Target Start/End: Complemental strand, 5086465 - 5086383
Alignment:
Q  166 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 248  Q
    |||||| |||||||||||||| |||||||||||||  ||| |||||||||||||||||| |||||||||||||| ||||||||    
T  5086465 aacctgggcaaaggagtaacataattattaaaacacttattgttacgttcagtccataaaacccagacacagagtagccaaat 5086383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 33019679 - 33019761
Alignment:
Q  166 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 248  Q
    |||||| |||||||||||||| ||||||||||||| |||| |||||||||||||||||||||| |||||||||| || |||||    
T  33019679 aacctgggcaaaggagtaacataattattaaaacacctattgttacgttcagtccataagacctagacacagagtaggcaaat 33019761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 247
Target Start/End: Complemental strand, 503973 - 503892
Alignment:
Q  166 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaa 247  Q
    |||||| | |||||||||| ||||| ||| |||||  |||  |||||||||||||||||||||||| |||||||||||||||    
T  503973 aacctgggtaaaggagtaatagaatcattgaaacacatattattacgttcagtccataagacccaggcacagagaagccaaa 503892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 33639616 - 33639698
Alignment:
Q  166 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 248  Q
    |||||| | |||||||||| ||||| ||| |||||  ||| |||||||||||||||||| |||||| |||| |||||||||||    
T  33639616 aacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttcagtccataatacccaggcacaaagaagccaaat 33639698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 8263953 - 8264026
Alignment:
Q  175 aaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 248  Q
    |||||||||| ||||| ||| |||||  ||| |||||||||||||||||||| |||| || |||||||||||||    
T  8263953 aaaggagtaatagaatcattgaaacacatattgttacgttcagtccataagatccaggcatagagaagccaaat 8264026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 19227212 - 19227294
Alignment:
Q  166 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 248  Q
    |||||| | |||||||||| ||||  ||| |||||  ||| |||||||||||||||||| |||||  |||| |||||||||||    
T  19227212 aacctgagtaaaggagtaatagaagcattgaaacacatattgttacgttcagtccataaaacccaagcacaaagaagccaaat 19227294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 6970710 - 6970785
Alignment:
Q  173 gcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 248  Q
    ||||||||||||||||||||||||||||  ||| |||||||| ||||||||||||||||||||| || ||||||||    
T  6970710 gcaaaggagtaacagaattattaaaacacttattgttacgttgagtccataagacccagacacaaagtagccaaat 6970785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 21439351 - 21439281
Alignment:
Q  166 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacaca 236  Q
    |||||| |||||||||| |||  |||||||||||| |||| ||||||||||||||||||||||||||||||    
T  21439351 aacctgggcaaaggagtcacatgattattaaaacacctattgttacgttcagtccataagacccagacaca 21439281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 25923769 - 25923851
Alignment:
Q  166 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 248  Q
    |||||| | |||||||||| ||||| ||| |||||  ||| ||||||||||||||||||||||||| |||| |||||||||||    
T  25923769 aacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttcagtccataagacccaggcacaaagaagccaaat 25923851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 17804655 - 17804726
Alignment:
Q  177 aggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 248  Q
    |||| ||| ||||| ||| |||||  ||| ||||||||||||||||||||||||| ||||||||||||||||    
T  17804655 aggaataatagaatcattgaaacacatattgttacgttcagtccataagacccaggcacagagaagccaaat 17804726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 248
Target Start/End: Complemental strand, 34519046 - 34518964
Alignment:
Q  166 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 248  Q
    |||||| | |||||||||| ||||| ||| |||||  ||| |||||||||||||||||| |||||| |||| |||||||||||    
T  34519046 aacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttcagtccataaaacccaggcacaaagaagccaaat 34518964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 45987748 - 45987830
Alignment:
Q  166 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 248  Q
    |||||| | |||||||||| ||||| ||| |||||  ||| |||||||||||||||||| |||||| |||| |||||||||||    
T  45987748 aacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttcagtccataaaacccaggcacaaagaagccaaat 45987830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 33796767 - 33796727
Alignment:
Q  208 ttacgttcagtccataagacccagacacagagaagccaaat 248  Q
    |||||||||||| |||| ||||||||||| |||||||||||    
T  33796767 ttacgttcagtctataaaacccagacacaaagaagccaaat 33796727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 11575112 - 11575049
Alignment:
Q  189 attattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaattagt 252  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  11575112 attattaaaacacctattgttacgttcagtccataagacccagacacagagtagccaaattagt 11575049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 166 - 248
Target Start/End: Complemental strand, 5415587 - 5415505
Alignment:
Q  166 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 248  Q
    |||||| | |||||||||| ||||| ||| |||||  ||| ||||||||||||||||||||||||| |||| |||||||||||    
T  5415587 aacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttcagtccataagacccaggcacaaagaagccaaat 5415505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 174 - 248
Target Start/End: Complemental strand, 22095684 - 22095610
Alignment:
Q  174 caaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 248  Q
    ||||||| ||| ||||||||| ||||| |||| |||||||||||||||||| ||||| ||||| |||||||||||    
T  22095684 caaaggaataatagaattattgaaacacctattgttacgttcagtccataaaacccaaacacaaagaagccaaat 22095610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 20894196 - 20894110
Alignment:
Q  166 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaattagt 252  Q
    |||||| ||||||||||||||   |||||||||||  ||| |||||||||||||||||||||||| ||||| || ||||||||||||    
T  20894196 aacctgggcaaaggagtaacatggttattaaaacacttattgttacgttcagtccataagacccaaacacaaagtagccaaattagt 20894110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 51144763 - 51144845
Alignment:
Q  166 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 248  Q
    |||||| |||||||||||| ||||||||| ||||| |||| |||||||||||||||||| || || ||||| || ||||||||    
T  51144763 aacctgggcaaaggagtaatagaattattgaaacacctattgttacgttcagtccataaaactcaaacacaaagtagccaaat 51144845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 10607 - 10689
Alignment:
Q  166 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 248  Q
    |||||| | |||||||||| ||||| ||| |||||  ||| |||||||||||||||||| |||||| |||| |||||||||||    
T  10607 aacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttcagtccataaaacccaggcacaaagaagccaaat 10689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 34709350 - 34709275
Alignment:
Q  173 gcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 248  Q
    |||||||||||| ||||||||| ||||| || | |||||||||||||||||  || ||||||||||| || |||||    
T  34709350 gcaaaggagtaaaagaattattgaaacacctgttgttacgttcagtccatagaactcagacacagaggagtcaaat 34709275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 24314718 - 24314800
Alignment:
Q  166 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 248  Q
    |||||| | |||||||||| ||||| ||| ||| |  ||| ||||||||||||||||||||| ||| |||| |||||||||||    
T  24314718 aacctgggtaaaggagtaatagaatcattgaaaaacatattgttacgttcagtccataagactcaggcacaaagaagccaaat 24314800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 248
Target Start/End: Complemental strand, 25505435 - 25505353
Alignment:
Q  166 aacctgtgcaaaggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 248  Q
    |||||| | |||||||||| ||||| ||| |||||  ||| |||| ||||||| |||||||||||| |||| |||||||||||    
T  25505435 aacctgggtaaaggagtaatagaatcattgaaacacatattgttatgttcagttcataagacccaggcacaaagaagccaaat 25505353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 43810519 - 43810590
Alignment:
Q  177 aggagtaacagaattattaaaacatctatagttacgttcagtccataagacccagacacagagaagccaaat 248  Q
    |||||||| ||||||||| ||  | ||||  ||||||||||||||||| |||||| |||| |||||||||||    
T  43810519 aggagtaatagaattattgaacaacctattattacgttcagtccataacacccaggcacaaagaagccaaat 43810590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University