View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1959_low_2 (Length: 417)

Name: NF1959_low_2
Description: NF1959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1959_low_2
NF1959_low_2
[»] chr8 (41 HSPs)
chr8 (53-322)||(39889926-39890197)
chr8 (279-406)||(39890197-39890324)
chr8 (41-212)||(30539132-30539304)
chr8 (40-147)||(16982751-16982857)
chr8 (42-212)||(6807311-6807480)
chr8 (41-210)||(29657702-29657877)
chr8 (40-147)||(3676268-3676375)
chr8 (56-147)||(37813247-37813338)
chr8 (40-212)||(23702275-23702448)
chr8 (44-147)||(21486721-21486824)
chr8 (40-212)||(45177201-45177375)
chr8 (50-209)||(41487360-41487520)
chr8 (51-210)||(26823828-26823989)
chr8 (50-212)||(32071165-32071325)
chr8 (40-132)||(25144024-25144116)
chr8 (40-131)||(29044687-29044778)
chr8 (52-147)||(41567087-41567182)
chr8 (85-210)||(42218429-42218555)
chr8 (165-212)||(36688263-36688311)
chr8 (41-212)||(20853378-20853549)
chr8 (163-209)||(25896993-25897040)
chr8 (41-132)||(27545422-27545512)
chr8 (41-147)||(22192439-22192545)
chr8 (41-131)||(22846526-22846616)
chr8 (42-131)||(33298422-33298511)
chr8 (40-137)||(29790834-29790931)
chr8 (63-146)||(5916759-5916842)
chr8 (42-77)||(8287745-8287780)
chr8 (40-131)||(9762283-9762374)
chr8 (166-212)||(22846709-22846756)
chr8 (42-77)||(37205682-37205717)
chr8 (54-132)||(14880417-14880495)
chr8 (40-78)||(17071047-17071085)
chr8 (85-147)||(17071807-17071867)
chr8 (85-147)||(17576406-17576466)
chr8 (40-78)||(17577187-17577225)
chr8 (156-209)||(20699450-20699504)
chr8 (155-208)||(26824088-26824141)
chr8 (40-96)||(35213169-35213225)
chr8 (42-146)||(41625528-41625632)
chr8 (165-212)||(45515933-45515981)
[»] chr6 (22 HSPs)
chr6 (40-212)||(33399786-33399958)
chr6 (40-211)||(6036800-6036971)
chr6 (40-212)||(30349349-30349522)
chr6 (40-210)||(266252-266420)
chr6 (42-147)||(26311546-26311651)
chr6 (53-208)||(10727347-10727504)
chr6 (67-212)||(2853582-2853730)
chr6 (40-209)||(18031082-18031250)
chr6 (51-212)||(17248636-17248799)
chr6 (40-137)||(5003219-5003316)
chr6 (44-147)||(20474849-20474951)
chr6 (40-209)||(32143261-32143432)
chr6 (43-146)||(26601528-26601631)
chr6 (50-132)||(3812822-3812903)
chr6 (44-103)||(11351746-11351805)
chr6 (50-209)||(239095-239256)
chr6 (163-212)||(30349620-30349670)
chr6 (165-212)||(2203416-2203464)
chr6 (166-212)||(2841079-2841126)
chr6 (42-77)||(12256901-12256936)
chr6 (40-147)||(17532318-17532424)
chr6 (165-193)||(20474970-20474998)
[»] chr1 (50 HSPs)
chr1 (43-211)||(16874646-16874816)
chr1 (50-212)||(3377501-3377665)
chr1 (44-212)||(45738936-45739105)
chr1 (52-209)||(8301497-8301655)
chr1 (51-210)||(1096469-1096630)
chr1 (41-136)||(46912332-46912427)
chr1 (41-147)||(39642349-39642455)
chr1 (40-146)||(44672380-44672486)
chr1 (40-137)||(16298197-16298294)
chr1 (40-212)||(17760682-17760858)
chr1 (40-143)||(25486285-25486387)
chr1 (40-147)||(30849370-30849477)
chr1 (40-127)||(48319490-48319577)
chr1 (40-193)||(49426133-49426284)
chr1 (40-147)||(50226531-50226638)
chr1 (44-147)||(50401438-50401540)
chr1 (50-132)||(41997791-41997873)
chr1 (52-209)||(17692730-17692887)
chr1 (50-147)||(18632382-18632479)
chr1 (40-212)||(32295093-32295267)
chr1 (53-209)||(12960998-12961155)
chr1 (44-147)||(14190686-14190789)
chr1 (40-147)||(25085533-25085640)
chr1 (40-147)||(44436824-44436930)
chr1 (62-146)||(8009796-8009880)
chr1 (40-212)||(14978797-14978970)
chr1 (40-147)||(46572893-46572998)
chr1 (41-147)||(7579731-7579837)
chr1 (41-147)||(23220633-23220739)
chr1 (163-211)||(5287838-5287887)
chr1 (50-131)||(16545643-16545724)
chr1 (40-143)||(20224671-20224773)
chr1 (40-130)||(5287367-5287457)
chr1 (100-146)||(7060696-7060742)
chr1 (163-212)||(12960846-12960896)
chr1 (41-131)||(46505311-46505401)
chr1 (163-212)||(51250485-51250535)
chr1 (42-146)||(6320631-6320733)
chr1 (51-147)||(6569658-6569754)
chr1 (42-77)||(14879-14914)
chr1 (42-77)||(32558353-32558388)
chr1 (42-77)||(33811562-33811597)
chr1 (42-77)||(34988227-34988262)
chr1 (164-209)||(15659259-15659305)
chr1 (163-193)||(50226412-50226442)
chr1 (85-146)||(6606603-6606664)
chr1 (41-78)||(18216820-18216857)
chr1 (62-146)||(19893066-19893150)
chr1 (40-80)||(7061368-7061408)
chr1 (41-77)||(7598746-7598782)
[»] chr3 (61 HSPs)
chr3 (41-212)||(51315625-51315798)
chr3 (40-147)||(44436538-44436645)
chr3 (41-212)||(54719138-54719309)
chr3 (40-212)||(3916431-3916603)
chr3 (40-209)||(44585926-44586097)
chr3 (40-138)||(25843441-25843539)
chr3 (40-132)||(36687731-36687823)
chr3 (40-211)||(1814697-1814866)
chr3 (40-147)||(1938383-1938490)
chr3 (40-131)||(19404534-19404625)
chr3 (40-147)||(33329757-33329864)
chr3 (41-212)||(38177178-38177349)
chr3 (40-147)||(43747420-43747527)
chr3 (40-147)||(44433205-44433311)
chr3 (41-147)||(27178288-27178394)
chr3 (40-212)||(20432324-20432497)
chr3 (40-147)||(47189734-47189841)
chr3 (52-147)||(54464229-54464324)
chr3 (85-212)||(38957845-38957975)
chr3 (40-146)||(46226765-46226871)
chr3 (41-209)||(48348400-48348569)
chr3 (40-132)||(7218291-7218383)
chr3 (40-132)||(14856696-14856788)
chr3 (40-132)||(36677651-36677743)
chr3 (40-147)||(28712521-28712628)
chr3 (40-128)||(44624710-44624797)
chr3 (99-211)||(50802660-50802773)
chr3 (99-211)||(50873104-50873217)
chr3 (40-137)||(52008319-52008418)
chr3 (41-143)||(35359067-35359169)
chr3 (57-142)||(791477-791562)
chr3 (40-212)||(3192774-3192947)
chr3 (40-212)||(14340874-14341046)
chr3 (99-210)||(22494555-22494667)
chr3 (67-130)||(49787334-49787397)
chr3 (50-112)||(14992781-14992843)
chr3 (101-212)||(44127547-44127661)
chr3 (50-135)||(4474147-4474231)
chr3 (100-212)||(25902553-25902667)
chr3 (42-146)||(36567016-36567120)
chr3 (54-211)||(43586715-43586872)
chr3 (166-212)||(25248692-25248739)
chr3 (115-146)||(25248758-25248789)
chr3 (101-212)||(28712663-28712775)
chr3 (42-77)||(37182140-37182175)
chr3 (40-127)||(53184596-53184682)
chr3 (100-146)||(4474270-4474316)
chr3 (101-147)||(38958046-38958092)
chr3 (42-76)||(42230172-42230206)
chr3 (42-76)||(45744037-45744071)
chr3 (166-211)||(53020587-53020633)
chr3 (164-193)||(29512567-29512596)
chr3 (42-146)||(32508060-32508164)
chr3 (98-147)||(35359182-35359231)
chr3 (40-77)||(38511796-38511833)
chr3 (61-146)||(54716667-54716752)
chr3 (40-132)||(86655-86747)
chr3 (42-74)||(10439426-10439458)
chr3 (40-96)||(12759648-12759704)
chr3 (165-212)||(25154447-25154495)
chr3 (166-209)||(36677783-36677827)
[»] scaffold0062 (1 HSPs)
scaffold0062 (53-146)||(46228-46321)
[»] chr7 (39 HSPs)
chr7 (40-209)||(36580415-36580585)
chr7 (40-209)||(18504246-18504417)
chr7 (40-212)||(35250119-35250292)
chr7 (40-212)||(28785895-28786071)
chr7 (50-212)||(17931880-17932040)
chr7 (40-212)||(41243644-41243816)
chr7 (40-146)||(29834291-29834397)
chr7 (40-208)||(21505758-21505927)
chr7 (43-147)||(6726398-6726501)
chr7 (40-212)||(15107132-15107303)
chr7 (40-209)||(18186591-18186763)
chr7 (41-211)||(28472391-28472560)
chr7 (41-147)||(4049775-4049882)
chr7 (40-212)||(15029058-15029234)
chr7 (40-147)||(36903330-36903436)
chr7 (51-147)||(15348018-15348113)
chr7 (40-212)||(20184916-20185090)
chr7 (59-210)||(47909696-47909848)
chr7 (41-131)||(8073957-8074047)
chr7 (163-212)||(36903531-36903581)
chr7 (62-147)||(3381929-3382013)
chr7 (167-212)||(14247569-14247614)
chr7 (166-212)||(42256582-42256630)
chr7 (164-212)||(12905791-12905839)
chr7 (66-134)||(45717978-45718046)
chr7 (62-193)||(28350307-28350436)
chr7 (85-212)||(28350116-28350245)
chr7 (42-77)||(16879373-16879408)
chr7 (58-137)||(20505147-20505226)
chr7 (42-89)||(38879286-38879333)
chr7 (164-209)||(6792061-6792107)
chr7 (164-212)||(3318318-3318367)
chr7 (40-77)||(3319179-3319216)
chr7 (40-137)||(5172588-5172685)
chr7 (50-131)||(19644885-19644966)
chr7 (58-127)||(23826106-23826175)
chr7 (61-146)||(36801761-36801846)
chr7 (100-212)||(4049922-4050035)
chr7 (41-77)||(25987063-25987099)
[»] chr5 (46 HSPs)
chr5 (40-212)||(27904623-27904797)
chr5 (40-212)||(12406180-12406354)
chr5 (40-212)||(3333841-3334015)
chr5 (40-212)||(32391859-32392033)
chr5 (50-145)||(2974702-2974797)
chr5 (40-212)||(25910721-25910897)
chr5 (43-209)||(18402989-18403157)
chr5 (40-212)||(35166297-35166469)
chr5 (40-211)||(43098167-43098337)
chr5 (41-147)||(40276170-40276276)
chr5 (40-209)||(31080480-31080650)
chr5 (40-147)||(9852853-9852960)
chr5 (61-147)||(19131661-19131747)
chr5 (40-212)||(22300601-22300774)
chr5 (40-127)||(26563075-26563162)
chr5 (40-212)||(36798170-36798344)
chr5 (52-210)||(37897870-37898029)
chr5 (40-146)||(20512264-20512370)
chr5 (40-210)||(20629884-20630057)
chr5 (50-212)||(25363825-25363989)
chr5 (40-131)||(28446087-28446178)
chr5 (50-147)||(30604237-30604334)
chr5 (40-146)||(16132812-16132918)
chr5 (44-209)||(24405493-24405659)
chr5 (40-146)||(26702504-26702609)
chr5 (40-146)||(26972237-26972342)
chr5 (100-212)||(12406041-12406154)
chr5 (40-132)||(3999238-3999330)
chr5 (40-132)||(19340904-19340996)
chr5 (164-212)||(36798441-36798490)
chr5 (40-211)||(24779276-24779447)
chr5 (50-138)||(34320097-34320185)
chr5 (71-147)||(35877356-35877431)
chr5 (40-211)||(39574240-39574409)
chr5 (165-212)||(40132904-40132952)
chr5 (42-77)||(4096588-4096623)
chr5 (40-103)||(6130398-6130461)
chr5 (163-209)||(8284158-8284205)
chr5 (88-147)||(9852973-9853032)
chr5 (42-77)||(10029213-10029248)
chr5 (42-77)||(35306843-35306878)
chr5 (62-132)||(40133071-40133140)
chr5 (106-147)||(31080686-31080727)
chr5 (41-78)||(31157043-31157080)
chr5 (40-77)||(34734212-34734249)
chr5 (103-147)||(35877483-35877527)
[»] chr4 (70 HSPs)
chr4 (40-212)||(2836899-2837073)
chr4 (40-212)||(44356538-44356710)
chr4 (56-212)||(8965672-8965824)
chr4 (41-212)||(53312286-53312460)
chr4 (40-137)||(43074728-43074825)
chr4 (40-212)||(14449424-14449599)
chr4 (40-212)||(20112290-20112463)
chr4 (50-212)||(10059847-10060013)
chr4 (51-212)||(2016791-2016954)
chr4 (40-146)||(29697590-29697695)
chr4 (40-212)||(1420684-1420858)
chr4 (40-212)||(52462928-52463101)
chr4 (40-143)||(4796180-4796283)
chr4 (41-212)||(23759715-23759887)
chr4 (50-209)||(47999533-47999693)
chr4 (40-191)||(53924891-53925042)
chr4 (40-209)||(27978695-27978865)
chr4 (51-147)||(51362606-51362702)
chr4 (40-210)||(21871527-21871696)
chr4 (40-210)||(21927388-21927557)
chr4 (41-131)||(51371546-51371636)
chr4 (40-212)||(25909487-25909661)
chr4 (56-147)||(2654125-2654216)
chr4 (40-212)||(12719585-12719760)
chr4 (40-133)||(34567756-34567849)
chr4 (40-147)||(16292335-16292442)
chr4 (44-132)||(21322855-21322943)
chr4 (40-209)||(50769366-50769537)
chr4 (40-147)||(21597542-21597649)
chr4 (115-209)||(2180780-2180874)
chr4 (40-209)||(6637203-6637373)
chr4 (50-147)||(11824256-11824351)
chr4 (50-147)||(54983983-54984080)
chr4 (85-212)||(14060888-14061017)
chr4 (40-147)||(26089537-26089643)
chr4 (40-147)||(31553382-31553489)
chr4 (85-147)||(6207359-6207421)
chr4 (40-210)||(8070630-8070799)
chr4 (163-212)||(19909173-19909223)
chr4 (40-212)||(54855304-54855477)
chr4 (101-211)||(21957668-21957780)
chr4 (88-212)||(2181313-2181438)
chr4 (165-208)||(14060760-14060804)
chr4 (44-212)||(21451459-21451627)
chr4 (40-92)||(42526103-42526155)
chr4 (155-212)||(4796036-4796094)
chr4 (121-210)||(1420537-1420627)
chr4 (85-145)||(3658021-3658081)
chr4 (42-77)||(5344407-5344442)
chr4 (40-118)||(6614984-6615060)
chr4 (88-147)||(8965587-8965646)
chr4 (155-209)||(29350885-29350940)
chr4 (42-146)||(37289523-37289627)
chr4 (42-77)||(44921751-44921786)
chr4 (163-210)||(49185823-49185870)
chr4 (42-77)||(51537757-51537792)
chr4 (42-77)||(51696673-51696708)
chr4 (42-77)||(54607024-54607059)
chr4 (164-210)||(35615433-35615479)
chr4 (40-118)||(49185665-49185743)
chr4 (49-130)||(20118052-20118133)
chr4 (165-209)||(20737500-20737545)
chr4 (50-146)||(26675121-26675217)
chr4 (163-211)||(35615315-35615364)
chr4 (43-147)||(51233547-51233651)
chr4 (165-212)||(1571399-1571447)
chr4 (88-147)||(10059750-10059810)
chr4 (165-212)||(21957539-21957587)
chr4 (106-146)||(35392683-35392723)
chr4 (166-209)||(42526214-42526258)
[»] chr2 (48 HSPs)
chr2 (41-212)||(14943686-14943857)
chr2 (41-209)||(2609230-2609399)
chr2 (40-147)||(37803190-37803296)
chr2 (40-212)||(34679097-34679271)
chr2 (40-212)||(39918434-39918608)
chr2 (41-212)||(5470478-5470649)
chr2 (40-147)||(37431610-37431717)
chr2 (40-212)||(43028794-43028967)
chr2 (40-212)||(14489214-14489387)
chr2 (40-132)||(27489514-27489606)
chr2 (40-146)||(44617879-44617985)
chr2 (41-212)||(31827525-31827699)
chr2 (40-132)||(24472587-24472679)
chr2 (54-146)||(25411609-25411701)
chr2 (53-143)||(5008441-5008531)
chr2 (41-212)||(6592724-6592899)
chr2 (42-212)||(25333499-25333670)
chr2 (41-147)||(34760914-34761020)
chr2 (40-212)||(4576683-4576854)
chr2 (40-147)||(4925506-4925613)
chr2 (40-131)||(8553684-8553774)
chr2 (40-146)||(8857114-8857220)
chr2 (40-212)||(41196370-41196539)
chr2 (55-147)||(32969624-32969716)
chr2 (40-147)||(18969234-18969341)
chr2 (40-131)||(24306159-24306250)
chr2 (98-147)||(25452-25501)
chr2 (54-147)||(35718712-35718805)
chr2 (40-131)||(5362315-5362407)
chr2 (40-131)||(19895754-19895845)
chr2 (85-147)||(16043207-16043269)
chr2 (166-212)||(24498106-24498152)
chr2 (100-178)||(6510200-6510278)
chr2 (85-146)||(16238407-16238468)
chr2 (164-212)||(19399440-19399489)
chr2 (163-212)||(21361881-21361930)
chr2 (50-127)||(25092382-25092459)
chr2 (164-212)||(36715559-36715608)
chr2 (44-131)||(18709399-18709486)
chr2 (42-77)||(40711478-40711513)
chr2 (163-212)||(16043089-16043139)
chr2 (163-212)||(25375137-25375187)
chr2 (40-77)||(2936928-2936965)
chr2 (40-93)||(19399317-19399370)
chr2 (106-212)||(24306016-24306122)
chr2 (41-94)||(36195720-36195773)
chr2 (164-211)||(19399183-19399231)
chr2 (42-78)||(42445508-42445544)
[»] scaffold0015 (2 HSPs)
scaffold0015 (40-147)||(76929-77035)
scaffold0015 (163-212)||(77125-77175)
[»] scaffold0137 (1 HSPs)
scaffold0137 (44-211)||(19915-20083)
[»] scaffold0328 (1 HSPs)
scaffold0328 (40-209)||(9415-9585)
[»] scaffold0809 (1 HSPs)
scaffold0809 (44-209)||(2905-3068)
[»] scaffold0578 (1 HSPs)
scaffold0578 (53-143)||(3146-3236)
[»] scaffold0011 (1 HSPs)
scaffold0011 (40-193)||(145373-145527)
[»] scaffold0417 (1 HSPs)
scaffold0417 (40-112)||(9439-9511)
[»] scaffold0372 (1 HSPs)
scaffold0372 (44-212)||(124-292)
[»] scaffold0025 (2 HSPs)
scaffold0025 (163-209)||(19605-19652)
scaffold0025 (41-147)||(19170-19276)
[»] scaffold0016 (1 HSPs)
scaffold0016 (85-132)||(203361-203408)
[»] scaffold0166 (1 HSPs)
scaffold0166 (40-211)||(21659-21830)
[»] scaffold0014 (1 HSPs)
scaffold0014 (42-77)||(79127-79162)
[»] scaffold0515 (1 HSPs)
scaffold0515 (163-212)||(3639-3689)
[»] scaffold0306 (1 HSPs)
scaffold0306 (163-212)||(3639-3689)
[»] scaffold0067 (1 HSPs)
scaffold0067 (102-147)||(4216-4261)


Alignment Details
Target: chr8 (Bit Score: 146; Significance: 9e-77; HSPs: 41)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 53 - 322
Target Start/End: Original strand, 39889926 - 39890197
Alignment:
Q  53 ctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtagnnnnn 152  Q
    ||||||||| ||||||||||||||||||| | ||||||||||||||||| || ||||| || ||||||||||||||||||||||||| |||||||         
T  39889926 ctcacttagagtgtcacgtcagcgtaaaccgagtcaaaattgacattggaggccaaaattgccacagatgcaaaacttagagggcggatttgtagttttt 39890025  T
Q  153 nn-cttagagtgccaaaatcgcaactttgaaaaagttaggg-gttaaaactgctattaagccnnnnnnnaatagaaaatattaatatgtaaattgtaata 250  Q
       ||||||| |  |||||||||||||| |||| |||| || | ||||||||||||||||||       ||||||||||||||||| || ||||||||||    
T  39890026 tttcttagagggtaaaaatcgcaactttaaaaaggttaaggagctaaaactgctattaagcctttttttaatagaaaatattaatacgttaattgtaata 39890125  T
Q  251 ttgatttgaatataaacatttaacttatcaactcttttattacctttggtcaaaccaattgaatccaacccc 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39890126 ttgatttgaatataaacatttaacttatcaactcttttattacctttggtcaaaccaattgaatccaacccc 39890197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 279 - 406
Target Start/End: Original strand, 39890197 - 39890324
Alignment:
Q  279 caactcttttattacctttggtcaaaccaattgaatccaaccccttttctatgatagttcaatgttaatggcggtcacatatactctctattacttgaag 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39890197 caactcttttattacctttggtcaaaccaattgaatccaaccccttttctatgatagttcaatgttaatggcggtcacatatactctctattacttgaag 39890296  T
Q  379 ttttgcttctaaaacgacacattttcat 406  Q
    |||||||| |||||||||||||||||||    
T  39890297 ttttgcttttaaaacgacacattttcat 39890324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 41 - 212
Target Start/End: Original strand, 30539132 - 30539304
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggt 140  Q
    |||||||| |||||||||||||||| ||||||||| || || |  ||||||||||||||||||| |||||||| |||||||||||||||||| || ||||    
T  30539132 aacacgtggcacctcacttagggtgccacgtcagcatagaccgaatcaaaattgacattgggggccaaaactgccacagatgcaaaacttaggggacggt 30539231  T
Q  141 tttgtag-nnnnnnncttagagtgccaaaatcgcaactttgaaaaagttaggggttaaaactgctattaagcc 212  Q
    |||||||        ||||| |  |||||||||||||||||  ||||||| ||| ||||||||||||||||||    
T  30539232 tttgtagttttttttcttaggggaccaaaatcgcaactttgggaaagttaagggctaaaactgctattaagcc 30539304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 16982751 - 16982857
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||||||||| ||||| |||||||||||| |||  |||||||||| | ||||||| |||||||| |||||||||||||||||| ||||||    
T  16982751 taacacgtggcacctcacttggggtgccacgtcagcgtagactaagtcaaaattggccttggggg-caaaactggcacagatgcaaaacttagggggcgg 16982849  T
Q  140 ttttgtag 147  Q
    ||||||||    
T  16982850 ttttgtag 16982857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 42 - 212
Target Start/End: Original strand, 6807311 - 6807480
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggtt 141  Q
    ||||||| |||||||||||||||| |||||||||||| || | |||||||||||| ||| ||| |||||||| |||| ||||||||||||| ||| ||||    
T  6807311 acacgtggcacctcacttagggtgccacgtcagcgtagacagagtcaaaattgaccttgagggacaaaactgccacaaatgcaaaacttagggggtggtt 6807410  T
Q  142 ttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagttagggg-ttaaaactgctattaagcc 212  Q
    ||||||        |||||| | |||||| |||||||||  |||||||||||  ||||| ||||||||||||    
T  6807411 ttgtagtttttt--ttagagggtcaaaattgcaactttgggaaagttaggggactaaaattgctattaagcc 6807480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 41 - 210
Target Start/End: Complemental strand, 29657877 - 29657702
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacatt-gggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    |||||||| ||||||||||||||||||||||||| ||| || |  ||||||||||| || ||||| |||||||| |||| |||||||| |||| ||||||    
T  29657877 aacacgtggcacctcacttagggtgtcacgtcagtgtagaccgaatcaaaattgactttggggggccaaaactgccacatatgcaaaatttagggggcgg 29657778  T
Q  140 ttttgtag----nnnnnnncttagagtgccaaaatcgcaactttgaaaaagttaggg-gttaaaactgctattaag 210  Q
    ||||||||           ||||||| ||||||||||||||||||| |||||||||| | ||||||| ||||||||    
T  29657777 ttttgtagttttttttcttcttagagggccaaaatcgcaactttgataaagttagggaggtaaaactcctattaag 29657702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 3676268 - 3676375
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    |||||| || |||||||||||||||| |||||||||||| || | ||||||||||   ||||||  |||||||| |||||||||||||||||| ||||||    
T  3676268 taacacatggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggttttggggaccaaaactgccacagatgcaaaacttagtgggcgg 3676367  T
Q  140 ttttgtag 147  Q
    ||||||||    
T  3676368 ttttgtag 3676375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 37813247 - 37813338
Alignment:
Q  56 acttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag 147  Q
    |||||||||| |||||||||||| || | |||||||||| | ||||||| |||||||| |||||||||||||||||| ||||||||||||||    
T  37813247 acttagggtgccacgtcagcgtagaccgagtcaaaattggccttgggggccaaaactgccacagatgcaaaacttagggggcggttttgtag 37813338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 40 - 212
Target Start/End: Original strand, 23702275 - 23702448
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| || ||||||||||||| || |||||| || |||| |||||||||||| |||| || ||||||||||||| ||||||||||||| || |      
T  23702275 taacacgtggcatctcacttagggtgccatgtcagcatagactgagtcaaaattgaccttggaggccaaaactgtcacaaatgcaaaacttaggggacaa 23702374  T
Q  140 ttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    |||||||        ||||| | || ||||||||||||||   ||||||| |||| ||||||||||||||||||    
T  23702375 ttttgtaatttttttcttagggggctaaaatcgcaacttttggaaagttagggggctaaaactgctattaagcc 23702448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 21486824 - 21486721
Alignment:
Q  44 acgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggtttt 143  Q
    ||||| ||||||||||||||||||||||||||||| ||   |||||||||||  |||| || ||||| || ||||| |||||||||||| ||||||||||    
T  21486824 acgtgacacctcacttagggtgtcacgtcagcgtagaccaagtcaaaattgatcttggaggccaaaaatgccacaggtgcaaaacttagggggcggtttt 21486725  T
Q  144 gtag 147  Q
    ||||    
T  21486724 gtag 21486721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 45177375 - 45177201
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||| ||| |||||||||||||||| |||||||| ||| || | |||||||||  | ||| ||| ||||||||||||||||||||||||||| || ||     
T  45177375 taacatgtgacacctcacttagggtgccacgtcagtgtagaccgagtcaaaattagccttgagggccaaaactgtcacagatgcaaaacttaggggacga 45177276  T
Q  140 ttttgtag-nnnnnnncttagagtgccaaaatcgcaactttgaaaaagttagg-ggttaaaactgctattaagcc 212  Q
    ||||||||        ||||| |   ||||||||||||||||| ||||||||| || |||| |||||||||||||    
T  45177275 ttttgtagttttttttcttaggggatcaaaatcgcaactttgagaaagttaggaggctaaatctgctattaagcc 45177201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 50 - 209
Target Start/End: Original strand, 41487360 - 41487520
Alignment:
Q  50 cacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag-n 148  Q
    |||||||||||| |||||||||||||||| || | ||||||||||   ||||||| |||||| |  |||| |||||||||||| ||||||||||||||      
T  41487360 cacctcacttagcgtgtcacgtcagcgtagaccgagtcaaaattggtcttgggggccaaaacagctacagttgcaaaacttagggggcggttttgtagtt 41487459  T
Q  149 nnnnnncttagagtgccaaaatcgcaactttgaaaaagttag-gggttaaaactgctattaa 209  Q
          |||| || || ||||||||||||||| ||||||||| ||| |||||||||||||||    
T  41487460 ttttttctta-agggctaaaatcgcaactttggaaaagttagagggctaaaactgctattaa 41487520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 210
Target Start/End: Complemental strand, 26823989 - 26823828
Alignment:
Q  51 acctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag-nn 149  Q
    ||||||||||||||||||||||| | || | ||  ||||||||| ||||||||  |||||||| |||| ||||||||||||| ||| | ||||||||       
T  26823989 acctcacttagggtgtcacgtcaacctagattgaatcaaaattggcattggggcccaaaactgccacaaatgcaaaacttagggggtgattttgtagttt 26823890  T
Q  150 nnnnncttagagtgccaaaatcgcaactttgaaaaagttag-gggttaaaactgctattaag 210  Q
         ||||  | | |||||||| |||||||| |||||||| ||||||||||||||||||||    
T  26823889 tttttcttaaggggtcaaaatcgtaactttgagaaagttagagggttaaaactgctattaag 26823828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 212
Target Start/End: Original strand, 32071165 - 32071325
Alignment:
Q  50 cacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtagnn 149  Q
    ||||||||||| ||||  | ||||||||| || | ||||||||||   |||| |  ||||||||||| | ||||||||||||| ||||||||||||||      
T  32071165 cacctcacttaaggtgatatgtcagcgtagaccgagtcaaaattgttcttggagaccaaaactgtcatatatgcaaaacttagggggcggttttgtagtt 32071264  T
Q  150 nnnnncttagagtgccaaaatcgcaactttgaaaaagttaggggttaaaactgctattaagcc 212  Q
         ||||| | | |||||||||||||||  |||||||||||| ||||||||||||||||||    
T  32071265 tttt-cttaggg-gtcaaaatcgcaactttagaaaagttaggggctaaaactgctattaagcc 32071325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 132
Target Start/End: Complemental strand, 25144116 - 25144024
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttag 132  Q
    ||||| ||| ||| ||||||||||||  |||||||||||||| | |||||||||| | ||||  | |||||||| ||||||||||||||||||    
T  25144116 taacatgtggcacatcacttagggtgcaacgtcagcgtaaaccgagtcaaaattggctttggatgccaaaactgccacagatgcaaaacttag 25144024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 29044687 - 29044778
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaactta 131  Q
    |||| |||| ||||||| |||||||  |||||||||||| || | |||||||||| | ||||||| |||||||| |||| ||||||||||||    
T  29044687 taacgcgtggcacctcatttagggtaccacgtcagcgtagaccgagtcaaaattggccttgggggccaaaactgccacaaatgcaaaactta 29044778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 147
Target Start/End: Original strand, 41567087 - 41567182
Alignment:
Q  52 cctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag 147  Q
    ||||| ||| |||||||||||||| || || | ||||||||| |||||| |||| |||||||| |||||||||||| |||| || | |||||||||    
T  41567087 cctcatttaaggtgtcacgtcagcatagaccgagtcaaaattaacattgagggttaaaactgtgacagatgcaaaatttaggggactgttttgtag 41567182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 210
Target Start/End: Original strand, 42218429 - 42218555
Alignment:
Q  85 gtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtagnnnnnnncttagagtgccaaaatcgcaactt-tgaaa 183  Q
    |||||||||||| | |||||||||||||| ||| |  ||||||||||| || |||||||||||       |||| |||| |||||||||||||| | |||    
T  42218429 gtcaaaattgacctagggggtcaaaactgccactggggcaaaacttaggggacggttttgtagtttttttcttatagtgtcaaaatcgcaacttcttaaa 42218528  T
Q  184 aagttaggggttaaaactgctattaag 210  Q
    |  | | ||||||||||||||||||||    
T  42218529 acttaaagggttaaaactgctattaag 42218555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 36688263 - 36688311
Alignment:
Q  165 caaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  36688263 caaaatcacaactttgaaaaagttagggggttaaaactgctattaagcc 36688311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 212
Target Start/End: Complemental strand, 20853549 - 20853378
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggt 140  Q
    |||||||| ||||||| || ||||| ||||||| |||| |     ||||||||||  ||||||| |||||||| |||| ||||||||||||| ||| |||    
T  20853549 aacacgtggcacctcattttgggtgccacgtcaacgtagatctattcaaaattgatcttgggggccaaaactgccacatatgcaaaacttagggggtggt 20853450  T
Q  141 tttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    |||||||        |||| | | ||||||||||||||  | ||||||| |||| ||||||||||||||||||    
T  20853449 tttgtagttttttt-ttagggggtcaaaatcgcaacttcaagaaagttagggggctaaaactgctattaagcc 20853378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 25897040 - 25896993
Alignment:
Q  163 gccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaa 209  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||    
T  25897040 gccaaaatcgcaactttgaaaaagttagggggctaaaactgctattaa 25896993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 27545512 - 27545422
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttag 132  Q
    |||||||| |||||||||||||||| |||||||||||| |  | || ||||||| | || |||| |||||||| || |||||||||||||||    
T  27545512 aacacgtggcacctcacttagggtgccacgtcagcgtagatcgagttaaaattggc-tttggggccaaaactgccatagatgcaaaacttag 27545422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 147
Target Start/End: Original strand, 22192439 - 22192545
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggt 140  Q
    |||||||| |||||||||||||||| ||| | |||||| || | |||||||||||| ||||  | |||||| |  |||| ||||||||||||  | ||||    
T  22192439 aacacgtgacacctcacttagggtgccacataagcgtagaccgagtcaaaattgaccttggcagccaaaacggctacagttgcaaaacttaggagacggt 22192538  T
Q  141 tttgtag 147  Q
    |||||||    
T  22192539 tttgtag 22192545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 131
Target Start/End: Complemental strand, 22846616 - 22846526
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaactta 131  Q
    |||||||| |||||||||||||||| || ||||||||| ||    ||||||||| | ||| ||| |||||||| || ||||||||||||||    
T  22846616 aacacgtggcacctcacttagggtgccatgtcagcgtagaccaattcaaaattgcccttgagggccaaaactgccaaagatgcaaaactta 22846526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 131
Target Start/End: Complemental strand, 33298511 - 33298422
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaatt-gacattgggggtcaaaactgtcacagatgcaaaactta 131  Q
    ||||||| |||||||||||||||| |||||||||||| || |  |||||||| ||| ||||| | |||||||| ||||||||| |||||||    
T  33298511 acacgtggcacctcacttagggtgccacgtcagcgtagaccgaatcaaaattagac-ttgggagccaaaactgccacagatgccaaactta 33298422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 29790931 - 29790834
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggc 137  Q
    ||||| ||| ||| |||| ||||||| |||||||||||| ||   |||||||||||| | ||||  |||||||| ||||  |||||||||||||||||    
T  29790931 taacatgtgacacttcacatagggtgccacgtcagcgtagaccaagtcaaaattgacctcggggaccaaaactgccacatgtgcaaaacttagagggc 29790834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 5916759 - 5916842
Alignment:
Q  63 gtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgta 146  Q
    |||||||||||||||  |||| |||||||||||| | | ||| |||||||| || |||| ||| || |||||||| ||||||||    
T  5916759 gtgtcacgtcagcgttgactgagtcaaaattgacttagagggccaaaactgccaaagatccaatacatagagggctgttttgta 5916842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 8287745 - 8287780
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcgt 77  Q
    ||||||| ||||||||||||||||||||||||||||    
T  8287745 acacgtggcacctcacttagggtgtcacgtcagcgt 8287780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 131
Target Start/End: Complemental strand, 9762374 - 9762283
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaactta 131  Q
    ||||| ||| ||||||| |||  ||| |||||||||||| || |  |||||||||| ||||| || |||||||| || ||||||||||||||    
T  9762374 taacatgtggcacctcatttaatgtgccacgtcagcgtagacagaatcaaaattgatattggaggccaaaactgccaaagatgcaaaactta 9762283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 22846709 - 22846756
Alignment:
Q  166 aaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    |||||| ||||||| ||||||||| |||||||||||||||||||||||    
T  22846709 aaaatcacaactttaaaaaagttaaggggttaaaactgctattaagcc 22846756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 37205682 - 37205717
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcgt 77  Q
    ||||||| ||||||||||||||||||||||||||||    
T  37205682 acacgtggcacctcacttagggtgtcacgtcagcgt 37205717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 132
Target Start/End: Complemental strand, 14880495 - 14880417
Alignment:
Q  54 tcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttag 132  Q
    ||||||||| || ||||||||| || || | |||||||| | | ||||||| |||||||| ||||||||||||| ||||    
T  14880495 tcacttaggatgccacgtcagcatagaccgagtcaaaatcggccttgggggccaaaactgccacagatgcaaaatttag 14880417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 17071047 - 17071085
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgta 78  Q
    ||||||||| |||||||||||||||| ||||||||||||    
T  17071047 taacacgtggcacctcacttagggtgccacgtcagcgta 17071085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 17071807 - 17071867
Alignment:
Q  85 gtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag 147  Q
    |||||||||||| ||||||   ||||||||||||| |||||||||||| ||||||||||||||    
T  17071807 gtcaaaattgaccttggggca-aaaactgtcacaggtgcaaaacttag-gggcggttttgtag 17071867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 17576466 - 17576406
Alignment:
Q  85 gtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag 147  Q
    |||||||||||| ||||||   ||||||||||||| |||||||||||| ||||||||||||||    
T  17576466 gtcaaaattgaccttggggca-aaaactgtcacaggtgcaaaacttag-gggcggttttgtag 17576406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 17577225 - 17577187
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgta 78  Q
    ||||||||| |||||||||||||||| ||||||||||||    
T  17577225 taacacgtggcacctcacttagggtgccacgtcagcgta 17577187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 20699450 - 20699504
Alignment:
Q  156 ttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaa 209  Q
    |||||||  |||||| |||||||| ||||||||| ||||||||||||||||||||    
T  20699450 ttagagtatcaaaattgcaactttaaaaaagttagggggttaaaactgctattaa 20699504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 26824088 - 26824141
Alignment:
Q  155 cttagagtgccaaaatcgcaactttgaaaaagttaggggttaaaactgctatta 208  Q
    ||||||| | |||||||||||||| |  |||||||||||| |||||||||||||    
T  26824088 cttagagggtcaaaatcgcaacttcgtgaaagttaggggtgaaaactgctatta 26824141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 35213169 - 35213225
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgac 96  Q
    ||||||||| ||||||||||| |||| ||||||||||||  | | ||||||||||||    
T  35213169 taacacgtggcacctcacttaaggtgccacgtcagcgtaggccgagtcaaaattgac 35213225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 41625632 - 41625528
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggtt 141  Q
    ||||||| |||||||||||||||| |||||||||||  || | ||||| | |||  | |||| ||||||||| || |||  |||||| ||| |||| |||    
T  41625632 acacgtggcacctcacttagggtgccacgtcagcgttgaccgagtcaacactgaactgggggttcaaaactgccaaagaatcaaaacatagggggctgtt 41625533  T
Q  142 ttgta 146  Q
    |||||    
T  41625532 ttgta 41625528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 45515981 - 45515933
Alignment:
Q  165 caaaatcgcaactttgaaaaagtt-aggggttaaaactgctattaagcc 212  Q
    ||||||||||||||||||||| || ||||| ||||||||| ||||||||    
T  45515981 caaaatcgcaactttgaaaaaattaaggggctaaaactgcaattaagcc 45515933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 33399958 - 33399786
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| ||| |||||||||||| |||||||||||| || | |||||||||||| || |||| |||||||| |||| ||| ||||||||| |  |||    
T  33399958 taacacgtgacacatcacttagggtgccacgtcagcgtagaccgagtcaaaattgaccttaggggccaaaactgccacaaatgtaaaacttagggtccgg 33399859  T
Q  140 ttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagttaggggttaaaactgctattaagcc 212  Q
    ||||||||       ||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  33399858 ttttgtagtttttttcttagagggccaaaatcgcaactttggaaaagttaggggctaaaactgctattaagcc 33399786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 40 - 211
Target Start/End: Original strand, 6036800 - 6036971
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||| ||| |||||||||||||||||||||||||| |||||   |||||||||| | |||||||||||||||| |||| ||||||||||||| || | |    
T  6036800 taacatgtggcacctcacttagggtgtcacgtcagcataaaccaagtcaaaattggctttgggggtcaaaactgccacatatgcaaaacttaggggacag 6036899  T
Q  140 ttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagttaggggttaaaactgctattaagc 211  Q
    ||||||||       |||||   |||||||||||||||||  |||||||||||| |||||||||||||||||    
T  6036900 ttttgtagttttcttcttaggaggccaaaatcgcaactttagaaaagttaggggctaaaactgctattaagc 6036971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 30349522 - 30349349
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||| ||| |||||||||||||||| ||||||| |||| || | |||| ||||| | |||||||||||||||  |||||||||||||||||  ||||||    
T  30349522 taacatgtggcacctcacttagggtgccacgtcaacgtagaccgagtcataattggccttgggggtcaaaactaccacagatgcaaaacttaaggggcgg 30349423  T
Q  140 ttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagttag-gggttaaaactgctattaagcc 212  Q
    ||||||||       ||||| |   ||||||||||||||||  |||||||| ||| ||||||||||||||||||    
T  30349422 ttttgtagtttttttcttaggggctcaaaatcgcaactttgggaaagttagagggctaaaactgctattaagcc 30349349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 40 - 210
Target Start/End: Original strand, 266252 - 266420
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| ||||||||||||| ||||||||||||||| || |  |||||||||   || |||| |||||||| ||||| |||||||||||  ||||||    
T  266252 taacacgtgacacctcacttaggatgtcacgtcagcgtagaccgaatcaaaattg-gttttggggccaaaactgccacaggtgcaaaacttaaggggcgg 266350  T
Q  140 ttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagttaggggttaaaactgctattaag 210  Q
    |||||||        ||||| |  |||||||||||| ||||| |||||||||||||||||||| |||||||    
T  266351 ttttgtaatttttttcttag-gacccaaaatcgcaattttgagaaagttaggggttaaaactgatattaag 266420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 42 - 147
Target Start/End: Original strand, 26311546 - 26311651
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggtt 141  Q
    ||||||| ||||||||||||| || |||||||||||| || | |||||||||||| ||||||| |||||||| |||| ||||||||||||  ||| ||||    
T  26311546 acacgtggcacctcacttaggatgccacgtcagcgtagaccgagtcaaaattgaccttgggggccaaaactgccacatatgcaaaacttaaggggtggtt 26311645  T
Q  142 ttgtag 147  Q
    ||||||    
T  26311646 ttgtag 26311651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 53 - 208
Target Start/End: Original strand, 10727347 - 10727504
Alignment:
Q  53 ctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag-nnnn 151  Q
    ||||||||||||  |||||||||||| |    |||||||||| | ||||||| |||||||| |||||||||||||||||| ||||||||||||||         
T  10727347 ctcacttagggtcccacgtcagcgtagatcaagtcaaaattggccttgggggccaaaactgccacagatgcaaaacttagggggcggttttgtagttttt 10727446  T
Q  152 nnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctatta 208  Q
       ||||| | ||||||||| |||||||| |||||||| |||| ||||||||||||||    
T  10727447 tttcttagggggccaaaatcacaactttggaaaagttagggggctaaaactgctatta 10727504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 67 - 212
Target Start/End: Original strand, 2853582 - 2853730
Alignment:
Q  67 cacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag-nnnnnnnctta-gagtgc 164  Q
    |||||||||||| | || |||||||||| | ||||||| |||||||| |||| ||| ||||||||| ||||||||||||||        |||| | | ||    
T  2853582 cacgtcagcgtagaatgagtcaaaattggccttgggggccaaaactgccacatatgaaaaacttagggggcggttttgtagttttttttcttaggggggc 2853681  T
Q  165 caaaatcgcaactttgaaaaagttagg-ggttaaaactgctattaagcc 212  Q
    |||||| |||||||||| ||||||||| |||||||||||||||||||||    
T  2853682 caaaattgcaactttgagaaagttaggaggttaaaactgctattaagcc 2853730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 40 - 209
Target Start/End: Original strand, 18031082 - 18031250
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||| ||| |||||||||||||||| |||||||||||| ||   |||||||||||  ||| ||| ||||||| ||||| || |||||||||  || |||    
T  18031082 taacaagtgacacctcacttagggtgccacgtcagcgtagaccaagtcaaaattgatcttgagggccaaaactatcacaaatacaaaacttaagggacgg 18031181  T
Q  140 ttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagttaggggttaaaactgctattaa 209  Q
    ||||||||       |||| ||  |||||||  ||||||| ||||||||||||||||||||| |||||||    
T  18031182 ttttgtag-ttttttcttaaaggaccaaaattccaactttaaaaaagttaggggttaaaactactattaa 18031250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 51 - 212
Target Start/End: Complemental strand, 17248799 - 17248636
Alignment:
Q  51 acctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag-nn 149  Q
    ||||||||||||||| ||||||| |||| || |  |||||||||   ||  ||| |||||||||| ||||||||||||||||||||||||||||  |       
T  17248799 acctcacttagggtgccacgtcaacgtagaccgaatcaaaattggtcttaagggccaaaactgtcgcagatgcaaaacttagagggcggttttgaggttt 17248700  T
Q  150 nnnnncttagagtgccaaaatcgcaactttgaaaaagttagg-ggttaaaactgctattaagcc 212  Q
         |||||||   ||||||||||||||| ||||||||||| || ||||||||||||||||||    
T  17248699 tttttcttagaggatcaaaatcgcaactttaaaaaagttaggaggctaaaactgctattaagcc 17248636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 40 - 137
Target Start/End: Original strand, 5003219 - 5003316
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggc 137  Q
    ||||| ||| ||||||||||||||||||||||||||||| ||   || ||||||||||||||| | |||||||| ||||  |||||||||||| ||||    
T  5003219 taacatgtgacacctcacttagggtgtcacgtcagcgtagaccaagttaaaattgacattgggagccaaaactgccacaattgcaaaacttagggggc 5003316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 20474849 - 20474951
Alignment:
Q  44 acgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggtttt 143  Q
    ||||| |||||||| |||  || ||||||| |||| || | ||||| |||||||||||||| |||||||| |||||||||||||||||| |||| |||||    
T  20474849 acgtggcacctcacatagactgccacgtcaacgtataccgagtcaacattgacattgggggccaaaactgccacagatgcaaaacttagggggc-gtttt 20474947  T
Q  144 gtag 147  Q
    ||||    
T  20474948 gtag 20474951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 209
Target Start/End: Complemental strand, 32143432 - 32143261
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||| ||| |||||||||||| ||| ||| ||| |||| || | ||||||||||   ||||||| |||||||| ||||| |||||||||||  ||||||    
T  32143432 taacatgtgccacctcacttagagtgccacatcaacgtagaccgagtcaaaattggtcttgggggccaaaactgccacaggtgcaaaacttaaggggcgg 32143333  T
Q  140 ttttgta---gnnnnnnncttagagtgccaaaatcgcaactttgaaaaagttaggggttaaaactgctattaa 209  Q
    |||||||           |||||||   ||||||||||||||||||||||||||||| |||| ||||||||||    
T  32143332 ttttgtaattttttttctcttagag-atcaaaatcgcaactttgaaaaagttaggggctaaatctgctattaa 32143261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 26601631 - 26601528
Alignment:
Q  43 cacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttt 142  Q
    |||||| ||||||||| ||||||  || |||||||| || | ||||||||||   ||||||  |||| |||||||||||||||||||||| ||| |||||    
T  26601631 cacgtgacacctcactaagggtgctacatcagcgtagaccgagtcaaaattggtcttggggaccaaagctgtcacagatgcaaaacttagggggtggttt 26601532  T
Q  143 tgta 146  Q
    ||||    
T  26601531 tgta 26601528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 3812903 - 3812822
Alignment:
Q  50 cacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttag 132  Q
    |||||||||||||||| |||||||||||| || ||||||||||||   || |||| |||||||| |||| |||||||||||||    
T  3812903 cacctcacttagggtgccacgtcagcgtagaccgggtcaaaattggtctt-ggggccaaaactgccacatatgcaaaacttag 3812822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 11351805 - 11351746
Alignment:
Q  44 acgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggg 103  Q
    ||||| |||||||||||||||| |||||||||||| || | |||||||||| ||||||||    
T  11351805 acgtggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggcattgggg 11351746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 209
Target Start/End: Original strand, 239095 - 239256
Alignment:
Q  50 cacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagaggg--cggttttgtag 147  Q
    |||||||||||||||| |||||||||||| || |  ||||||||| | ||||| | ||||||||  |||| ||| |||||||  |||  || ||||||||    
T  239095 cacctcacttagggtgccacgtcagcgtagaccgaatcaaaattggccttgggtgccaaaactgcaacaggtgctaaacttatgggggacgattttgtag 239194  T
Q  148 nnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaa 209  Q
           ||||| |  ||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  239195 tttttttcttaggggaccaaa-tcgcaactttgagaaagttagggggttaaaactgctattaa 239256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 30349620 - 30349670
Alignment:
Q  163 gccaaaatcgcaactttgaaaaagttagggg-ttaaaactgctattaagcc 212  Q
    |||||||||||||||||||||||||||||||   |||||||||||||||||    
T  30349620 gccaaaatcgcaactttgaaaaagttaggggacaaaaactgctattaagcc 30349670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 2203416 - 2203464
Alignment:
Q  165 caaaatcgcaactttgaaaaagtt-aggggttaaaactgctattaagcc 212  Q
    |||| ||||||||||||||||||| ||| ||||||||||||||||||||    
T  2203416 caaagtcgcaactttgaaaaagttaaggagttaaaactgctattaagcc 2203464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 2841079 - 2841126
Alignment:
Q  166 aaaatcgcaactttgaaaaagttaggggt-taaaactgctattaagcc 212  Q
    |||| ||||| |||||||||||||||||| ||||||||||||||||||    
T  2841079 aaaagcgcaattttgaaaaagttaggggtctaaaactgctattaagcc 2841126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 12256936 - 12256901
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcgt 77  Q
    ||||||| ||||||||||||||||||||||||||||    
T  12256936 acacgtggcacctcacttagggtgtcacgtcagcgt 12256901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 17532424 - 17532318
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||| ||| |||||||||| ||||| || |||| |||| || | ||||||| || | || |||| |||||||| ||||| |||||||||||  ||||||    
T  17532424 taacatgtggcacctcactt-gggtgccatgtcatcgtagaccgagtcaaaactggctttaggggccaaaactgccacaggtgcaaaacttaaggggcgg 17532326  T
Q  140 ttttgtag 147  Q
    ||||||||    
T  17532325 ttttgtag 17532318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 193
Target Start/End: Original strand, 20474970 - 20474998
Alignment:
Q  165 caaaatcgcaactttgaaaaagttagggg 193  Q
    |||||||||||||||||||||||||||||    
T  20474970 caaaatcgcaactttgaaaaagttagggg 20474998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 8e-34; HSPs: 50)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 43 - 211
Target Start/End: Original strand, 16874646 - 16874816
Alignment:
Q  43 cacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttt 142  Q
    |||||| |||||||||||||||| |||||||||||| || | |||||||||| | ||||| | |||||||| |||||||||||||||||  |||||||||    
T  16874646 cacgtggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggccttgggagccaaaactgccacagatgcaaaacttatggggcggttt 16874745  T
Q  143 tgtagnnnnnnncttagagtg-ccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagc 211  Q
    |||||       ||||||| | ||||||| |||||||||| ||||||| ||||||||||||||||||||||    
T  16874746 tgtagtttttttcttagagggtccaaaattgcaactttgagaaagttagggggttaaaactgctattaagc 16874816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 50 - 212
Target Start/End: Complemental strand, 3377665 - 3377501
Alignment:
Q  50 cacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag-n 148  Q
    |||||||||||||| |||||||||||||| || | |||||||||| | ||||||| |||||||| |||| ||||||||||||| ||||||||||||||      
T  3377665 cacctcacttagggcgtcacgtcagcgtagaccgagtcaaaattggccttgggggccaaaactgccacaaatgcaaaacttagggggcggttttgtagtt 3377566  T
Q  149 nnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
          ||||| | |||||||||||||||||| |||||||| |||| ||||||||||||||||||    
T  3377565 ttttttcttagggggccaaaatcgcaactttggaaaagttagggggctaaaactgctattaagcc 3377501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 44 - 212
Target Start/End: Complemental strand, 45739105 - 45738936
Alignment:
Q  44 acgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggtttt 143  Q
    ||||| |||||||||||||||| ||||| ||| || || | |||||||||||| ||||||| |||||||| || ||||||||||||||  ||||||||||    
T  45739105 acgtggcacctcacttagggtgccacgttagcatagaccgagtcaaaattgactttgggggccaaaactgccatagatgcaaaacttaaggggcggtttt 45739006  T
Q  144 gtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagttaggg-gttaaaactgctattaagcc 212  Q
    ||||       ||||| | | ||||||| ||||||||| |||||||||| ||||||| ||||||||||||    
T  45739005 gtagttttttccttagggggtcaaaatcacaactttgagaaagttagggagttaaaattgctattaagcc 45738936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 52 - 209
Target Start/End: Original strand, 8301497 - 8301655
Alignment:
Q  52 cctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag-nnn 150  Q
    ||||| ||||||||||||||||||||| | || ||||||||||   |||||||||||||||| ||||||||||||| |||| || |||||||||||        
T  8301497 cctcaattagggtgtcacgtcagcgtagattgagtcaaaattggtcttgggggtcaaaactgccacagatgcaaaatttaggggacggttttgtagtttt 8301596  T
Q  151 nnnncttagagtgccaaaatcgcaactttgaaaaagttaggggttaaaactgctattaa 209  Q
        ||||||| | |||||| | ||||||| |||| ||||||| |||||||||||||||    
T  8301597 tattcttagagggtcaaaattgaaactttggaaaaattaggggctaaaactgctattaa 8301655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 51 - 210
Target Start/End: Complemental strand, 1096630 - 1096469
Alignment:
Q  51 acctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttg-tagnn 149  Q
    |||||||||||| || |||||||||||| || | ||||||||||||  | |||| |||||||| ||||||||| |||||||||||||||||||| |||      
T  1096630 acctcacttaggatgccacgtcagcgtagaccgagtcaaaattgaccctaggggccaaaactgccacagatgcgaaacttagagggcggttttgttagtt 1096531  T
Q  150 nnnnncttagagtgccaaaatcgcaactttgaaaaagtt-aggggttaaaactgctattaag 210  Q
          |||| |  ||||||||||||||||| ||||||| ||||| |||||||| |||||||    
T  1096530 ttttttttaggggaccaaaatcgcaactttggaaaagttaaggggctaaaactgttattaag 1096469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 136
Target Start/End: Original strand, 46912332 - 46912427
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagaggg 136  Q
    |||||||| ||||||| |||||||| ||||||||||||||| | |||||||||| |||| |||| |||||||| || |||||||||||||| ||||    
T  46912332 aacacgtggcacctcatttagggtgccacgtcagcgtaaacagagtcaaaattggcattaggggccaaaactgccatagatgcaaaacttaaaggg 46912427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 41 - 147
Target Start/End: Original strand, 39642349 - 39642455
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggt 140  Q
    |||||||| ||| |||||||||||| | ||||||| || || | |||||||||| | ||||||| |||||||| |||| ||||||||||||| |||||||    
T  39642349 aacacgtggcacttcacttagggtgccgcgtcagcatagaccgagtcaaaattggctttgggggccaaaactgccacaaatgcaaaacttagggggcggt 39642448  T
Q  141 tttgtag 147  Q
    |||||||    
T  39642449 tttgtag 39642455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 146
Target Start/End: Complemental strand, 44672486 - 44672380
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| ||| |||||||||||| |||||||||||| || |  ||||||||||  ||||| | |||||||| |||| ||||||||||||| ||||||    
T  44672486 taacacgtggcacttcacttagggtgccacgtcagcgtagaccgaatcaaaattgatcttgggcgccaaaactgccacatatgcaaaacttagggggcgg 44672387  T
Q  140 ttttgta 146  Q
    |||||||    
T  44672386 ttttgta 44672380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 137
Target Start/End: Original strand, 16298197 - 16298294
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggc 137  Q
    ||||||||| |||||||||||| |||||||||||||||| ||   ||||||||||| |||||| | |||||||| |||||||||||||| ||| ||||    
T  16298197 taacacgtggcacctcacttagagtgtcacgtcagcgtagaccaagtcaaaattgatattgggagccaaaactgccacagatgcaaaacatagggggc 16298294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 17760858 - 17760682
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| ||||||| |||||||| |||||||| ||| || | |||||||||||  |||| || |||||||| |||| ||||||||||||| ||| ||    
T  17760858 taacacgtggcacctcatttagggtgccacgtcagtgtagaccgagtcaaaattgatcttggtggccaaaactgccacatatgcaaaacttagggggtgg 17760759  T
Q  140 ttttgtag---nnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    ||||||||          ||||| | |||||||||||||||||||  |||||| |||| |||| |||||||||||||    
T  17760758 ttttgtagttttttttttcttagggggccaaaatcgcaactttgaggaagttagggggctaaagctgctattaagcc 17760682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 40 - 143
Target Start/End: Complemental strand, 25486387 - 25486285
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| ||||||| |||||||| |||||||||||| || | |||||||||||  || |||| |||||| | ||||||||||||||||||||||||     
T  25486387 taacacgtggcacctcatttagggtgccacgtcagcgtagaccgagtcaaaattgaacttaggggccaaaac-gccacagatgcaaaacttagagggcga 25486289  T
Q  140 tttt 143  Q
    ||||    
T  25486288 tttt 25486285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 30849370 - 30849477
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| ||||||||||||||||| |||||||| || ||   || ||||||| | ||| ||| ||||||| ||||||||||||||||||| || |||    
T  30849370 taacacgtggcacctcacttagggtgttacgtcagcatagaccaagttaaaattggccttgtgggccaaaactatcacagatgcaaaacttaggggacgg 30849469  T
Q  140 ttttgtag 147  Q
    ||||||||    
T  30849470 ttttgtag 30849477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 40 - 127
Target Start/End: Complemental strand, 48319577 - 48319490
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaa 127  Q
    ||||||||| ||||||||||||| || |||||||||||  |  | |||||||||||| ||||||||||||||||||| ||||||||||    
T  48319577 taacacgtggcacctcacttaggatgccacgtcagcgttgatagagtcaaaattgaccttgggggtcaaaactgtcatagatgcaaaa 48319490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 40 - 193
Target Start/End: Original strand, 49426133 - 49426284
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| ||||| ||||||||||||||||||||||| ||   |||||||||| |||| |||| |||||||| |||| ||||||||||||  |  | |    
T  49426133 taacacgtgacaccttacttagggtgtcacgtcagcgtagaccaagtcaaaattggcatt-ggggccaaaactgccacaaatgcaaaacttaaggaacag 49426231  T
Q  140 ttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagttagggg 193  Q
    ||||||||       ||||||| || ||||||||||||||| ||||||||||||    
T  49426232 ttttgtag-ttttttcttagagggctaaaatcgcaactttggaaaagttagggg 49426284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 50226531 - 50226638
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||||||||||||||| |||||||||||| || | ||||| |||  | || |||| ||||||||  |||| |||||||||||||||||||    
T  50226531 taacacgtggcacctcacttagggtgccacgtcagcgtagaccgagtcaatattagccttcggggccaaaactgctacaggtgcaaaacttagagggcgg 50226630  T
Q  140 ttttgtag 147  Q
    ||| ||||    
T  50226631 tttagtag 50226638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 50401540 - 50401438
Alignment:
Q  44 acgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggtttt 143  Q
    ||||| ||||||| ||| ||||||||||||| ||| || | |||||||||| | ||||||  ||||||||||||| ||||||||||||| ||||||||||    
T  50401540 acgtggcacctcatttaaggtgtcacgtcagagtagaccgagtcaaaattggccttggggc-caaaactgtcacaaatgcaaaacttagggggcggtttt 50401442  T
Q  144 gtag 147  Q
    ||||    
T  50401441 gtag 50401438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 41997791 - 41997873
Alignment:
Q  50 cacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttag 132  Q
    ||||||||||||||||||||||||||||| || | |||||||||| | |||| || |||||||| |||||||||||| |||||    
T  41997791 cacctcacttagggtgtcacgtcagcgtagaccgagtcaaaattggccttggaggccaaaactgccacagatgcaaagcttag 41997873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 52 - 209
Target Start/End: Complemental strand, 17692887 - 17692730
Alignment:
Q  52 cctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtagnnnn 151  Q
    ||||||||||||||||||||||||||| |||| ||||||| || | |||||| | ||||| | |||| ||||||||||||  ||||| |||||||         
T  17692887 cctcacttagggtgtcacgtcagcgtagactgagtcaaaa-tggccttggggatgaaaaccgccacaaatgcaaaacttaaggggcgattttgtattttt 17692789  T
Q  152 nnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaa 209  Q
       ||||| | || |||||| ||||||||| ||||||| |||||||||| |||||||||    
T  17692788 tttcttagggggctaaaatcacaactttgagaaagttagggggttaaaattgctattaa 17692730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 50 - 147
Target Start/End: Complemental strand, 18632479 - 18632382
Alignment:
Q  50 cacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag 147  Q
    ||||||| ||||||||| ||||||||||| |  | |||||||||||   |||||| ||||||||||||| ||||||||||||||||||  ||||||||    
T  18632479 cacctcatttagggtgttacgtcagcgtagatcgagtcaaaattgatcctgggggccaaaactgtcacaaatgcaaaacttagagggcaattttgtag 18632382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 40 - 212
Target Start/End: Original strand, 32295093 - 32295267
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| ||||||| |||||||| |||||| | ||| || | || ||||||| | ||||||| ||||||||||||| ||| |||||||||  || ||    
T  32295093 taacacgtggcacctcatttagggtgccacgtccgggtagaccgagttaaaattggctttgggggccaaaactgtcacaaatgtaaaacttaggtggtgg 32295192  T
Q  140 ttttgt-agnnnnnnncttagagtgccaaaatcgcaactttgaaaaag-ttaggggttaaaactgctattaagcc 212  Q
    |||||| |        ||||| | | |||||||||||||||||||||| ||||||| ||||||| ||||||||||    
T  32295193 ttttgtaattttttttcttagggggtcaaaatcgcaactttgaaaaagtttaggggctaaaactcctattaagcc 32295267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 209
Target Start/End: Original strand, 12960998 - 12961155
Alignment:
Q  53 ctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtagnnnnn 152  Q
    |||||||||||||||||||||||||| || | |||||||||| | || || | |||||||| ||||| ||||||| |||| || |  ||||||||         
T  12960998 ctcacttagggtgtcacgtcagcgtagaccgagtcaaaattggcctttggagccaaaactgccacagttgcaaaatttaggggacaattttgtagttttt 12961097  T
Q  153 nncttagagtgccaaaatcgcaactttgaaaaagttagg-ggttaaaactgctattaa 209  Q
      |||||    |||||||||||||||||||||| ||||| || |||||||||||||||    
T  12961098 ttcttaggaaaccaaaatcgcaactttgaaaaaattaggaggctaaaactgctattaa 12961155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 14190686 - 14190789
Alignment:
Q  44 acgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggtttt 143  Q
    ||||| ||||| |||||| ||| ||| |||||||| || | |||||||||| |||||| || |||||||| |||||||||||||||| ||||||  ||||    
T  14190686 acgtggcaccttacttagagtgccacatcagcgtagaccgagtcaaaattggcattggaggccaaaactgccacagatgcaaaacttcgagggccttttt 14190785  T
Q  144 gtag 147  Q
    ||||    
T  14190786 gtag 14190789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 25085533 - 25085640
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||||||||||||||| |||||||| ||| || |||||||||||||  ||| ||| |||||||| ||||| | |||||||| | | ||||    
T  25085533 taacacgtggcacctcacttagggtgccacgtcagtgtagaccgggtcaaaattgatcttgagggccaaaactgccacaggtacaaaacttggggtgcgg 25085632  T
Q  140 ttttgtag 147  Q
     |||||||    
T  25085633 atttgtag 25085640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 44436930 - 44436824
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| ||||||||||||||||  |||| |||||| |  | |||||||||||| ||||||| |||||||||||||  |||||||||||| || | |    
T  44436930 taacacgtggcacctcacttagggtgcgacgtaagcgtagatcgagtcaaaattgaccttggggg-caaaactgtcacaagtgcaaaacttaggggacag 44436832  T
Q  140 ttttgtag 147  Q
    ||||||||    
T  44436831 ttttgtag 44436824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 62 - 146
Target Start/End: Complemental strand, 8009880 - 8009796
Alignment:
Q  62 ggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgta 146  Q
    ||||||||||||||||| |  | ||||||||||   |||| |||||||||||||||||||||||||||| | | |||||||||||    
T  8009880 ggtgtcacgtcagcgtagaacgagtcaaaattggtcttggtggtcaaaactgtcacagatgcaaaacttcgggagcggttttgta 8009796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 14978970 - 14978797
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||| ||| |||||||||||||||| ||| |||||||| ||    ||||||||| | || |||| |||||||  ||||| |||||||||||| |||| |    
T  14978970 taacatgtggcacctcacttagggtgccacatcagcgtagaccaattcaaaattggcctttggggccaaaactaccacaggtgcaaaacttagggggcag 14978871  T
Q  140 ttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    ||||||||        | |  |  ||||||||||||||||| |||||||| |||| ||||||||||||||||||    
T  14978870 ttttgtagtttttttttgaaggacccaaaatcgcaactttggaaaagttagggggctaaaactgctattaagcc 14978797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 46572998 - 46572893
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| ||||||||||||||| |||| |||||||| ||   |||||||||| | ||||||  | |||||| |||| ||||||||||||| || |||    
T  46572998 taacacgtggcacctcacttagggtctcacatcagcgtagaccaagtcaaaattggccttgggg--ccaaactgccacaaatgcaaaacttaggggacgg 46572901  T
Q  140 ttttgtag 147  Q
    ||||||||    
T  46572900 ttttgtag 46572893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 41 - 147
Target Start/End: Complemental strand, 7579837 - 7579731
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggt 140  Q
    |||| ||| |||||||||||||||| || ||||||||| || | |||||||||  | |||||||  |||| || ||||  |||||||||||| |||||||    
T  7579837 aacatgtggcacctcacttagggtgccatgtcagcgtagaccgagtcaaaattagctttgggggcaaaaattgccacaagtgcaaaacttagcgggcggt 7579738  T
Q  141 tttgtag 147  Q
    |||||||    
T  7579737 tttgtag 7579731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 41 - 147
Target Start/End: Complemental strand, 23220739 - 23220633
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggt 140  Q
    |||| ||| |||||||||||||||| |||||||||||| || |  |||||||||   ||||||| |||||| | ||||  |||||||||||  |||||||    
T  23220739 aacatgtggcacctcacttagggtgccacgtcagcgtagaccgaatcaaaattggtcttgggggccaaaaccgccacatgtgcaaaacttaaggggcggt 23220640  T
Q  141 tttgtag 147  Q
    |||||||    
T  23220639 tttgtag 23220633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 5287838 - 5287887
Alignment:
Q  163 gccaaaatcgcaactttgaaaaagtt-aggggttaaaactgctattaagc 211  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  5287838 gccaaaatcgcaactttgagaaagttaaggggttaaaactgctattaagc 5287887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 16545724 - 16545643
Alignment:
Q  50 cacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaactta 131  Q
    ||||||||||||||||  |||||||| || || | |||||||||  |||||||||  |||||||||| ||||||||||||||    
T  16545724 cacctcacttagggtgctacgtcagcatagaccgagtcaaaattaccattgggggcaaaaactgtcatagatgcaaaactta 16545643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 143
Target Start/End: Original strand, 20224671 - 20224773
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    |||||||||  |||||| |||||||| |||||||||||| || | |||||||||| ||||| ||| |||||||| |||| || |||||| ||| ||| ||    
T  20224671 taacacgtggtacctcatttagggtgccacgtcagcgtagacagagtcaaaattgtcattgagggccaaaactgccaca-atacaaaacatagggggggg 20224769  T
Q  140 tttt 143  Q
    ||||    
T  20224770 tttt 20224773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 130
Target Start/End: Original strand, 5287367 - 5287457
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaactt 130  Q
    |||||| || |||||||||||||||| |||||||||||  || | |||||||||||| || |||| ||||||   |||| |||||||||||    
T  5287367 taacacttggcacctcacttagggtgccacgtcagcgtggaccgagtcaaaattgaccttcggggccaaaacatccacatatgcaaaactt 5287457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 7060742 - 7060696
Alignment:
Q  100 gggggtcaaaactgtcacagatgcaaaacttagagggcggttttgta 146  Q
    ||||||||||| ||| |||| ||||||||||||||||||||||||||    
T  7060742 gggggtcaaaattgttacagttgcaaaacttagagggcggttttgta 7060696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 12960896 - 12960846
Alignment:
Q  163 gccaaaatcgcaactttgaaaaagttag-gggttaaaactgctattaagcc 212  Q
    |||||||||||||||||||||||||||| ||| |||||||| |||||||||    
T  12960896 gccaaaatcgcaactttgaaaaagttagcgggctaaaactgttattaagcc 12960846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 131
Target Start/End: Original strand, 46505311 - 46505401
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaactta 131  Q
    |||| ||| |||||||||||||||||||||||| ||||||| | | ||||||||   ||||||| || ||||| | || ||||||||||||    
T  46505311 aacatgtggcacctcacttagggtgtcacgtcaacgtaaaccgagccaaaattggtcttgggggccagaactgccgcaaatgcaaaactta 46505401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 51250535 - 51250485
Alignment:
Q  163 gccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    ||||||||||||||||||||||||||| |||| |||||||| |||||||||    
T  51250535 gccaaaatcgcaactttgaaaaagttagggggctaaaactgttattaagcc 51250485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 6320733 - 6320631
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggtt 141  Q
    ||||||| ||||||||||||  ||||||||||||||| || | ||| ||||||   |  ||||||||||||  ||||||||||||| |||| || |||||    
T  6320733 acacgtggcacctcacttag--tgtcacgtcagcgtagaccgagtcgaaattggtctaaggggtcaaaactaccacagatgcaaaatttaggggacggtt 6320636  T
Q  142 ttgta 146  Q
    |||||    
T  6320635 ttgta 6320631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 6569658 - 6569754
Alignment:
Q  51 acctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag 147  Q
    ||||||||||| ||| |||||||||||| || |  |||||||||   ||| ||| |||||||| |||| ||| ||||||||  ||||||||||||||    
T  6569658 acctcacttagagtgccacgtcagcgtagaccgaatcaaaattggtcttgagggccaaaactgccacaaatgtaaaacttaaggggcggttttgtag 6569754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 14879 - 14914
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcgt 77  Q
    ||||||| ||||||||||||||||||||||||||||    
T  14879 acacgtgacacctcacttagggtgtcacgtcagcgt 14914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 32558353 - 32558388
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcgt 77  Q
    ||||||| ||||||||||||||||||||||||||||    
T  32558353 acacgtggcacctcacttagggtgtcacgtcagcgt 32558388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 33811597 - 33811562
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcgt 77  Q
    ||||||| ||||||||||||||||||||||||||||    
T  33811597 acacgtggcacctcacttagggtgtcacgtcagcgt 33811562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 34988262 - 34988227
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcgt 77  Q
    ||||||| ||||||||||||||||||||||||||||    
T  34988262 acacgtggcacctcacttagggtgtcacgtcagcgt 34988227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 15659259 - 15659305
Alignment:
Q  164 ccaaaatcgcaactttgaaaaagttagggg-ttaaaactgctattaa 209  Q
    |||||||| |||||||| |||||||||||| ||||||||||||||||    
T  15659259 ccaaaatcacaactttggaaaagttaggggcttaaaactgctattaa 15659305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 193
Target Start/End: Complemental strand, 50226442 - 50226412
Alignment:
Q  163 gccaaaatcgcaactttgaaaaagttagggg 193  Q
    |||||||||||||||||||||||||||||||    
T  50226442 gccaaaatcgcaactttgaaaaagttagggg 50226412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 6606664 - 6606603
Alignment:
Q  85 gtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgta 146  Q
    |||||||||||| ||||||| |||||||| || |||| ||| || |||||||| ||||||||    
T  6606664 gtcaaaattgaccttgggggccaaaactgccaaagattcaatacatagagggctgttttgta 6606603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 18216820 - 18216857
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgta 78  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  18216820 aacacgtggcacctcacttagggtgccacgtcagcgta 18216857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 146
Target Start/End: Original strand, 19893066 - 19893150
Alignment:
Q  62 ggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtc-aaaactgtcacagatgcaaaacttagagggcggttttgta 146  Q
    ||||||||||||||||| |||  ||||||| |||||||||||| | |||||||||| |||| ||| || ||| |||| ||||||||    
T  19893066 ggtgtcacgtcagcgtagactaagtcaaaagtgacattggggggcaaaaactgtcaaagatccaatacatag-gggctgttttgta 19893150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 7061368 - 7061408
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaa 80  Q
    ||||||||| |||| ||||||||||| ||||||||||||||    
T  7061368 taacacgtggcaccgcacttagggtgccacgtcagcgtaaa 7061408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 7598746 - 7598782
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgt 77  Q
    |||||||| |||||||||||||||| |||||||||||    
T  7598746 aacacgtggcacctcacttagggtgccacgtcagcgt 7598782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 61)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 41 - 212
Target Start/End: Original strand, 51315625 - 51315798
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggt 140  Q
    |||||||| |||||||||||||||| |||||||||||| || | |||||||||| | ||||||| |||||||| ||||| |||||||||||| |||||||    
T  51315625 aacacgtggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggccttgggggccaaaactgccacaggtgcaaaacttagggggcggt 51315724  T
Q  141 tttgtag-nnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    |||||||        ||||| | ||||||||||||||||||  ||||||| |||| ||||||||||||||||||    
T  51315725 tttgtagttttttttcttagggggccaaaatcgcaactttgggaaagttagggggctaaaactgctattaagcc 51315798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 44436538 - 44436645
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||||||||||||||| |||||||||||| || | |||||||||| | ||||||| |||||||| |||||||||||||||||| ||||||    
T  44436538 taacacgtggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggccttgggggccaaaactgccacagatgcaaaacttagggggcgg 44436637  T
Q  140 ttttgtag 147  Q
    ||||||||    
T  44436638 ttttgtag 44436645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 41 - 212
Target Start/End: Original strand, 54719138 - 54719309
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggt 140  Q
    ||||| || |||||||||||||||| |||||||||||| || | |||||||||| ||||||||| |||| |||  ||| ||||||||||||| |||||||    
T  54719138 aacacttggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggcattgggggccaaacctggtacatatgcaaaacttagggggcggt 54719237  T
Q  141 tttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    |||||||       |||||   |||||||||||||||||||| |||||| |||||||||||||| ||||||||    
T  54719238 tttgtag-ttttttcttaggaggccaaaatcgcaactttgaataagttagggggttaaaactgccattaagcc 54719309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 3916603 - 3916431
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||||||||||||||| ||||| || ||| || | |||||||||||| ||||||| |||||||| |||||||||||||||||| | |||     
T  3916603 taacacgtggcacctcacttagggtgccacgttagtgtagaccgagtcaaaattgactttgggggccaaaactgccacagatgcaaaacttagtgagcga 3916504  T
Q  140 ttttgtag-nnnnnnncttagagtgccaaaatcgcaactttgaaaaagttaggggttaaaactgctattaagcc 212  Q
    ||||||||        ||||| | ||||||||| ||||||  ||||| ||||||||||||||||||||||||||    
T  3916503 ttttgtagttttttttcttag-gggccaaaatcacaacttaaaaaaatttaggggttaaaactgctattaagcc 3916431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 40 - 209
Target Start/End: Original strand, 44585926 - 44586097
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    |||||| || |||||||||||||||| |||||||||||| || | |||||||||| |  |||||| |||||||| |||||| ||||||||||| ||||||    
T  44585926 taacacatggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggccgtgggggccaaaactgccacagaagcaaaacttagggggcgg 44586025  T
Q  140 ttttgtag-nnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaa 209  Q
    ||||||||        ||||| | ||||||||||||||||||  ||||||| |||| |||||||||||||||    
T  44586026 ttttgtagttttttttcttagggggccaaaatcgcaactttgggaaagttagggggctaaaactgctattaa 44586097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 40 - 138
Target Start/End: Complemental strand, 25843539 - 25843441
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcg 138  Q
    ||||||||| |||||| ||||||||| |||||||||||| ||||||||||||||| | ||||||  |||||||| |||||||||||||||||| |||||    
T  25843539 taacacgtggcacctcgcttagggtgccacgtcagcgtagactgggtcaaaattggccttggggaccaaaactgccacagatgcaaaacttagggggcg 25843441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 36687731 - 36687823
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttag 132  Q
    ||||||||| |||||||||||||||| ||||||||||||||| | ||||||||||||||||| || ||||| || |||| ||||||| |||||    
T  36687731 taacacgtggcacctcacttagggtgccacgtcagcgtaaaccgagtcaaaattgacattggaggccaaaattgccacaaatgcaaatcttag 36687823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 40 - 211
Target Start/End: Original strand, 1814697 - 1814866
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattga-cattgggggtcaaaactgtcacagatgcaaaacttagagggcg 138  Q
    ||||||||| |||||||||||||||| |||||||||||| || | ||||||||||| | | ||||| |||||||| |    ||||||||||||| || ||    
T  1814697 taacacgtggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattgatcttagggggccaaaactgcc----atgcaaaacttaggggacg 1814792  T
Q  139 gttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagttagg-ggttaaaactgctattaagc 211  Q
    |||||||||       ||||| |  ||||||||| ||||||| |||||||||| || |||||||||||||||||    
T  1814793 gttttgtagtttttttcttaggggtccaaaatcgaaactttggaaaagttaggaggctaaaactgctattaagc 1814866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 1938490 - 1938383
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||||||||||||||| || ||||||||| || | |||||||||||| ||| ||| |||||||  ||||| |||||||||||  ||||||    
T  1938490 taacacgtgacacctcacttagggtgccatgtcagcgtagaccgagtcaaaattgactttgtgggccaaaactaccacaggtgcaaaacttaaggggcgg 1938391  T
Q  140 ttttgtag 147  Q
    ||||||||    
T  1938390 ttttgtag 1938383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 19404534 - 19404625
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaactta 131  Q
    ||||||||| |||||||||||||||||||||| |||||| |||  |||||||||| | ||||||| |||||||||||||  |||||||||||    
T  19404534 taacacgtggcacctcacttagggtgtcacgttagcgtagactaagtcaaaattggccttgggggccaaaactgtcacatgtgcaaaactta 19404625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 33329757 - 33329864
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||||||||||||||| |||||||||||| || | ||||||||||   ||||||| |||||||| |||| |||||| |||||| || |||    
T  33329757 taacacgtggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggtcttgggggccaaaactgccacaaatgcaatacttaggggacgg 33329856  T
Q  140 ttttgtag 147  Q
    ||||||||    
T  33329857 ttttgtag 33329864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 212
Target Start/End: Complemental strand, 38177349 - 38177178
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggt 140  Q
    |||| ||| |||||||||||||||| |||||||||| |||| | |||||||||| | ||||||| ||||| ||||||| |||||||||||| | || |||    
T  38177349 aacatgtggcacctcacttagggtgccacgtcagcgcaaaccgagtcaaaattggccttgggggccaaaaatgtcacatatgcaaaacttaaaaggtggt 38177250  T
Q  141 tttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagtt-aggggttaaaactgctattaagcc 212  Q
    ||||||        ||||| | ||||||||||||||||||  |||||| ||||| ||||| ||| ||||||||    
T  38177249 tttgta-attttttcttagggggccaaaatcgcaactttgggaaagttaaggggctaaaattgccattaagcc 38177178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 43747420 - 43747527
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| ||||||||||||| || |||||||||||| || | |||||||||||   |||||| |||||||| || | ||||||||||||| ||||||    
T  43747420 taacacgtggcacctcacttaggatgccacgtcagcgtagaccgagtcaaaattgatcgtgggggccaaaactgccataaatgcaaaacttagggggcgg 43747519  T
Q  140 ttttgtag 147  Q
    ||||||||    
T  43747520 ttttgtag 43747527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 44433205 - 44433311
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| ||||| ||||||| || ||| |||||||| || |||||||||||| | ||||||| |||||||| |||| ||||||||||||| ||||||    
T  44433205 taacacgtgacacctaacttagg-tgccacatcagcgtagaccgggtcaaaattggccttgggggccaaaactgccacatatgcaaaacttagggggcgg 44433303  T
Q  140 ttttgtag 147  Q
    ||||||||    
T  44433304 ttttgtag 44433311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 41 - 147
Target Start/End: Original strand, 27178288 - 27178394
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggt 140  Q
    |||| ||| |||||||| ||||||| ||| |||||||| ||   |||||||||| |||||||||||||||||  |||||||||||||||||| ||| |||    
T  27178288 aacatgtgacacctcacgtagggtgacacatcagcgtagaccaagtcaaaattggcattgggggtcaaaactaccacagatgcaaaacttagggggtggt 27178387  T
Q  141 tttgtag 147  Q
    |||||||    
T  27178388 tttgtag 27178394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 40 - 212
Target Start/End: Original strand, 20432324 - 20432497
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatg-caaaacttagagggcg 138  Q
    ||||||||| ||||||||||||||||  ||||||||||| ||   |||||||||| | |||||||||||||||| ||||||||  ||||||||| ||| |    
T  20432324 taacacgtggcacctcacttagggtgctacgtcagcgtagaccaagtcaaaattgtccttgggggtcaaaactgccacagatgtaaaaacttagggggtg 20432423  T
Q  139 gttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
     ||||||||       ||||| |  |||||||| |||||||  |||||||| |||||||||| ||||||||||||    
T  20432424 attttgtag-ttttttcttaggggaccaaaatcacaacttttgaaaagttagggggttaaaaatgctattaagcc 20432497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 47189734 - 47189841
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| ||||||||||| ||||||||||||| ||| ||   |||||||||||  ||| |||||||||||| |||| ||||||||||||  | ||||    
T  47189734 taacacgtgacacctcacttaaggtgtcacgtcagtgtagacgaagtcaaaattgatcttgagggtcaaaactgccacaaatgcaaaacttatggagcgg 47189833  T
Q  140 ttttgtag 147  Q
    ||||||||    
T  47189834 ttttgtag 47189841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 54464324 - 54464229
Alignment:
Q  52 cctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag 147  Q
    ||||||||| |||| ||||| |||||| || | |||||||||||| |||||||||||||||| |||| ||||||||||||| || | |||||||||    
T  54464324 cctcacttaaggtgccacgtgagcgtagaccgagtcaaaattgaccttgggggtcaaaactgccacatatgcaaaacttaggggacagttttgtag 54464229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 85 - 212
Target Start/End: Complemental strand, 38957975 - 38957845
Alignment:
Q  85 gtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag--nnnnnnncttagagtgccaaaatcgcaactttgaa 182  Q
    |||||||||| | ||||||| |||||||| |||| ||||||||||||| ||||||||||||||         |||| || ||||||||||||||||| ||    
T  38957975 gtcaaaattggccttgggggccaaaactgccacaaatgcaaaacttagggggcggttttgtagtttttttttcttaaagggccaaaatcgcaactttaaa 38957876  T
Q  183 aaagttagg-ggttaaaactgctattaagcc 212  Q
    ||| ||||| || ||||||||||||||||||    
T  38957875 aaaattaggaggctaaaactgctattaagcc 38957845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 146
Target Start/End: Complemental strand, 46226871 - 46226765
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||||||||||||||| |||||||||||| || | || ||||||| ||| ||||| |||||||| ||||| |||||||| ||| ||| ||    
T  46226871 taacacgtggcacctcacttagggtgccacgtcagcgtataccgagttaaaattggcatcgggggccaaaactgccacaggtgcaaaacatagggggtgg 46226772  T
Q  140 ttttgta 146  Q
    | |||||    
T  46226771 tattgta 46226765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 41 - 209
Target Start/End: Original strand, 48348400 - 48348569
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggt 140  Q
    |||||||| |||||||||||| ||| |||||||||||| || | ||||||||||   || ||||||||||||| |||| ||||||||||||  ||||| |    
T  48348400 aacacgtggcacctcacttagcgtgccacgtcagcgtagaccgagtcaaaattgggctt-ggggtcaaaactgccacatatgcaaaacttaaggggcgat 48348498  T
Q  141 tttgtag-nnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaa 209  Q
    |||||||        |||| ||  |||||||||||||||| ||||||||| |||| ||||||| |||||||    
T  48348499 tttgtagttatttttcttaaaggaccaaaatcgcaactttaaaaaagttagggggataaaactactattaa 48348569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 7218291 - 7218383
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttag 132  Q
    ||||||||| ||||||||||| |||||||||||||| || |    |||||||||||| ||||||| |||||||| |||||||| |||||||||    
T  7218291 taacacgtggcacctcacttaaggtgtcacgtcagcatagatcaagtcaaaattgaccttgggggccaaaactgccacagatgtaaaacttag 7218383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 14856696 - 14856788
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttag 132  Q
    ||||||||| ||| ||||||| ||||||||||||||||| || |  ||||||||||||||||||| |||||||| ||||  ||||||| ||||    
T  14856696 taacacgtggcacatcacttaaggtgtcacgtcagcgtagaccgaatcaaaattgacattgggggccaaaactggcacatgtgcaaaatttag 14856788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 36677651 - 36677743
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttag 132  Q
    ||||||||| ||||||||||| |||| ||||||||||||||| | |||||||||||| |||| || ||||| || |||| ||||||| |||||    
T  36677651 taacacgtggcacctcacttaaggtgccacgtcagcgtaaaccgagtcaaaattgaccttggaggccaaaattgccacaaatgcaaatcttag 36677743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 28712628 - 28712521
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||||||||||||||| |||||||| ||| || | |||||| ||| | ||||| |  |||||||  ||||||||||||||||| |||||     
T  28712628 taacacgtggcacctcacttagggtgccacgtcagtgtagaccgagtcaaagttggccttgggtgctaaaactgctacagatgcaaaacttagggggcga 28712529  T
Q  140 ttttgtag 147  Q
    ||||||||    
T  28712528 ttttgtag 28712521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 44624797 - 44624710
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaac 128  Q
    |||||| ||||||||||||||||||| |||||||||||| || | |||||||||| | || |||  |||||||| ||||||||||||||    
T  44624797 taacacatgtcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggcctt-gggaccaaaactgccacagatgcaaaac 44624710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 99 - 211
Target Start/End: Complemental strand, 50802773 - 50802660
Alignment:
Q  99 tgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagtt-aggggttaa 197  Q
    ||||||||||||||| ||||  |||||||||||| |||  |||||||||       ||||| | ||||||||| |||||||| ||||||| || ||||||    
T  50802773 tgggggtcaaaactgccacatgtgcaaaacttagggggtagttttgtagtttttttcttagggggccaaaatcacaactttggaaaagttaagaggttaa 50802674  T
Q  198 aactgctattaagc 211  Q
    ||||||||||||||    
T  50802673 aactgctattaagc 50802660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 99 - 211
Target Start/End: Original strand, 50873104 - 50873217
Alignment:
Q  99 tgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagtt-aggggttaa 197  Q
    ||||||||||||||| ||||  |||||||||||| |||  |||||||||       ||||| | ||||||||| |||||||| ||||||| || ||||||    
T  50873104 tgggggtcaaaactgccacatgtgcaaaacttagggggtagttttgtagtttttttcttagggggccaaaatcacaactttggaaaagttaagaggttaa 50873203  T
Q  198 aactgctattaagc 211  Q
    ||||||||||||||    
T  50873204 aactgctattaagc 50873217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 52008418 - 52008319
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtc--aaaactgtcacagatgcaaaacttagagggc 137  Q
    ||||||||| ||||||||||||||||||||||||||||| || | ||||||||| |  || |||| |  ||||||| |||| |||||||| |||||||||    
T  52008418 taacacgtgacacctcacttagggtgtcacgtcagcgtagaccgagtcaaaattaattttaggggccaaaaaactgccacatatgcaaaaattagagggc 52008319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 41 - 143
Target Start/End: Complemental strand, 35359169 - 35359067
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggt 140  Q
    ||||||||  || ||||||| |||| |||||||||||| || | ||||||||||||||| |||| |||||||| ||||  ||||||| |||| ||||| |    
T  35359169 aacacgtgggacatcacttaaggtgccacgtcagcgtagaccgagtcaaaattgacattaggggccaaaactgccacatgtgcaaaaattagggggcgat 35359070  T
Q  141 ttt 143  Q
    |||    
T  35359069 ttt 35359067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 142
Target Start/End: Original strand, 791477 - 791562
Alignment:
Q  57 cttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttt 142  Q
    ||||||||| |||||||||||| |    ||| |||||||||||| ||| ||||| ||||||||||||||||||||  |||||||||    
T  791477 cttagggtgccacgtcagcgtagatcaagtcgaaattgacattgagggccaaaagtgtcacagatgcaaaacttatggggcggttt 791562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 3192947 - 3192774
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattg-ggggtcaaaactgtcacagatgcaaaacttagagggcg 138  Q
    ||||| ||| |||||||||||||||| || || || ||| || | |||||||||||| ||| |||| | |||||   |||| || ||||||||| || ||    
T  3192947 taacatgtggcacctcacttagggtgccatgttagtgtagaccgagtcaaaattgaccttgaggggcctaaactactacagttgaaaaacttaggggtcg 3192848  T
Q  139 gttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagttaggggttaaaactgctattaagcc 212  Q
    |||||||||       ||||| |    |||| ||||||||||||||||||||||| ||||||| ||||||||||    
T  3192847 gttttgtagttttttccttaggggatgaaaagcgcaactttgaaaaagttaggggctaaaacttctattaagcc 3192774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 212
Target Start/End: Original strand, 14340874 - 14341046
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    |||||| || |||||||||||   || || || |||||| || | |||||||||  | ||||||| |||||||| |||| ||||||||||||| || |      
T  14340874 taacacatgacacctcacttaacctgccatgttagcgtagaccgagtcaaaattagcgttgggggccaaaactgccacaaatgcaaaacttaggggacta 14340973  T
Q  140 ttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagttaggggttaaaactgctattaagcc 212  Q
    ||||||||        |||||  | ||||||||||||||||||||||||||  | ||||||| ||||||||||    
T  14340974 ttttgtagttttttttttagatggtcaaaatcgcaactttgaaaaagttagaaggtaaaactactattaagcc 14341046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 210
Target Start/End: Complemental strand, 22494667 - 22494555
Alignment:
Q  99 tgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaa 197  Q
    |||||| ||||| || |||| |||||||| |||||||||||||||||||       ||||| | | |||||||| ||||||| |||| ||| ||||||||    
T  22494667 tgggggccaaaattgccacaaatgcaaaatttagagggcggttttgtagtttttttcttagggggtcaaaatcgtaactttggaaaatttagggggttaa 22494568  T
Q  198 aactgctattaag 210  Q
    || ||||||||||    
T  22494567 aattgctattaag 22494555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 49787397 - 49787334
Alignment:
Q  67 cacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaactt 130  Q
    |||||||||||| || | |||||||||||| |||| || |||||||| ||||||||||||||||    
T  49787397 cacgtcagcgtagaccgagtcaaaattgactttggaggccaaaactgccacagatgcaaaactt 49787334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 14992781 - 14992843
Alignment:
Q  50 cacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaact 112  Q
    ||||||||||| |||| || ||||||||| |||| |||||||||||| ||||||| |||||||    
T  14992781 cacctcacttaaggtgccatgtcagcgtagactgagtcaaaattgaccttgggggacaaaact 14992843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 212
Target Start/End: Original strand, 44127547 - 44127661
Alignment:
Q  101 ggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtagnnnnnnnct--tagagtgccaaaatcgcaactttgaaaaagttag-gggttaa 197  Q
    |||||||||||||| |||| |||||| ||||| ||||| ||||||||        |  ||||| ||||||||||||||||||| ||| |||| | |||||    
T  44127547 ggggtcaaaactgttacagttgcaaagcttagggggcgattttgtagtttttttttcgtagagggccaaaatcgcaactttgagaaaattagagagttaa 44127646  T
Q  198 aactgctattaagcc 212  Q
    |||||||||||||||    
T  44127647 aactgctattaagcc 44127661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 4474231 - 4474147
Alignment:
Q  50 cacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagg 135  Q
    ||||||||||||| ||||| ||||||||| || |  |||||||||   || ||||||||||||| |||| ||||||||||||||||    
T  4474231 cacctcacttagg-tgtcatgtcagcgtagaccgaatcaaaattggtcttaggggtcaaaactgccacaaatgcaaaacttagagg 4474147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 100 - 212
Target Start/End: Original strand, 25902553 - 25902667
Alignment:
Q  100 gggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtagnnnnnnn-cttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaa 197  Q
    ||||| |||||||| |||| ||||||||||||   |||||||||||||        ||||| | ||||||||||||||||||| ||||||| |||| |||    
T  25902553 gggggccaaaactgccacaaatgcaaaacttatgaggcggttttgtagttttttttcttagggagccaaaatcgcaactttgagaaagttagggggctaa 25902652  T
Q  198 aactgctattaagcc 212  Q
    ||||| |||||||||    
T  25902653 aactgatattaagcc 25902667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 36567016 - 36567120
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggtt 141  Q
    ||||||| |||||||||||||||| |||||||||||  || | |||||||| | | ||||||| |||||||   |||| |||||||| ||| || | |||    
T  36567016 acacgtggcacctcacttagggtgccacgtcagcgttgaccgagtcaaaatcggccttgggggccaaaactagtacagttgcaaaacataggggtctgtt 36567115  T
Q  142 ttgta 146  Q
    |||||    
T  36567116 ttgta 36567120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 211
Target Start/End: Original strand, 43586715 - 43586872
Alignment:
Q  54 tcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtagnnnnnn 153  Q
    |||||||||||| |||||||||||| ||   ||||||||||  ||  |||| || |||||||||| ||||||||| |||  | || ||||||||          
T  43586715 tcacttagggtgccacgtcagcgtagaccaagtcaaaattggtatcaggggccataactgtcacaaatgcaaaacataggagacgattttgtagtttttt 43586814  T
Q  154 ncttagagtgccaaaatcgcaactttgaaaaagttagg-ggttaaaactgctattaagc 211  Q
     |||||   |||||||||||||||||||||||||| || || ||||||| |||||||||    
T  43586815 -cttaggaggccaaaatcgcaactttgaaaaagttgggaggctaaaactactattaagc 43586872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 25248739 - 25248692
Alignment:
Q  166 aaaatcgcaactttgaaaaagttag-gggttaaaactgctattaagcc 212  Q
    |||||||||||||| |||||||||  ||||||||||||||||||||||    
T  25248739 aaaatcgcaactttaaaaaagttaaagggttaaaactgctattaagcc 25248692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 146
Target Start/End: Complemental strand, 25248789 - 25248758
Alignment:
Q  115 cacagatgcaaaacttagagggcggttttgta 146  Q
    ||||||||||||||||||||||||||||||||    
T  25248789 cacagatgcaaaacttagagggcggttttgta 25248758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 212
Target Start/End: Original strand, 28712663 - 28712775
Alignment:
Q  101 ggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaa 199  Q
    |||||||||||||  |||| |||||||||||| ||||| ||||||||       ||||| | ||||||||| ||||||   |||||||| ||||  ||||    
T  28712663 ggggtcaaaactgctacagttgcaaaacttagggggcgattttgtagtttttttcttagggggccaaaatcacaacttcataaaagttagggggcgaaaa 28712762  T
Q  200 ctgctattaagcc 212  Q
    |||||||||||||    
T  28712763 ctgctattaagcc 28712775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 37182140 - 37182175
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcgt 77  Q
    ||||||| ||||||||||||||||||||||||||||    
T  37182140 acacgtggcacctcacttagggtgtcacgtcagcgt 37182175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 127
Target Start/End: Complemental strand, 53184682 - 53184596
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaa 127  Q
    ||||||||| ||| ||||||||||||||| ||||||||| || | ||||||||||   |||| || |||||||| |||| ||||||||    
T  53184682 taacacgtgacacatcacttagggtgtcaagtcagcgtagaccgagtcaaaattggttttggagg-caaaactgccacaaatgcaaaa 53184596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 4474270 - 4474316
Alignment:
Q  100 gggggtcaaaactgtcacagatgcaaaacttagagggcggttttgta 146  Q
    ||||| ||||||||  |||| ||||||||||||||||||||||||||    
T  4474270 gggggccaaaactgctacagttgcaaaacttagagggcggttttgta 4474316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 38958046 - 38958092
Alignment:
Q  101 ggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag 147  Q
    |||||||||||||  |||| |||||||||||| ||||||||||||||    
T  38958046 ggggtcaaaactgctacagttgcaaaacttagggggcggttttgtag 38958092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 42230172 - 42230206
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcg 76  Q
    ||||||| |||||||||||||||||||||||||||    
T  42230172 acacgtggcacctcacttagggtgtcacgtcagcg 42230206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 45744071 - 45744037
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcg 76  Q
    ||||||| |||||||||||||||||||||||||||    
T  45744071 acacgtggcacctcacttagggtgtcacgtcagcg 45744037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 53020587 - 53020633
Alignment:
Q  166 aaaatcgcaactttgaaaaagttaggggt-taaaactgctattaagc 211  Q
    |||||||||| ||||| |||||||||||| |||||||||||||||||    
T  53020587 aaaatcgcaattttgataaagttaggggtctaaaactgctattaagc 53020633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 193
Target Start/End: Complemental strand, 29512596 - 29512567
Alignment:
Q  164 ccaaaatcgcaactttgaaaaagttagggg 193  Q
    ||||||||||||||||||||||||||||||    
T  29512596 ccaaaatcgcaactttgaaaaagttagggg 29512567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 32508060 - 32508164
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaa-aattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggt 140  Q
    ||||||| |||||||||||||||| |||||||||||  |||| ||||| ||| ||| | ||||  ||||||||||| |||  |||||| ||| |||| ||    
T  32508060 acacgtggcacctcacttagggtgccacgtcagcgttgactgagtcaacaatggac-tcggggtccaaaactgtcaaagaatcaaaacatagggggctgt 32508158  T
Q  141 tttgta 146  Q
    ||||||    
T  32508159 tttgta 32508164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 35359182 - 35359231
Alignment:
Q  98 ttgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag 147  Q
    ||||||| |||||||| || || |||||||||||||||||| ||||||||    
T  35359182 ttgggggccaaaactgccatagttgcaaaacttagagggcgattttgtag 35359231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 38511796 - 38511833
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgt 77  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  38511796 taacacgtggcacctcacttagggtgccacgtcagcgt 38511833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 146
Target Start/End: Original strand, 54716667 - 54716752
Alignment:
Q  61 gggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgta 146  Q
    ||||| |||||||||| | |||  ||||||| |||| ||||||| ||||||||||| |||| ||| || |||||||  ||||||||    
T  54716667 gggtgccacgtcagcgaatactaagtcaaaagtgaccttgggggccaaaactgtcaaagatccaatacatagagggttgttttgta 54716752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 132
Target Start/End: Complemental strand, 86747 - 86655
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttag 132  Q
    ||||||||| |||||||||||||||  || ||||||||| |  | ||||||||||   ||||||| ||||||||  |||  ||||||||||||    
T  86747 taacacgtggcacctcacttagggtcccatgtcagcgtagatcgagtcaaaattggtcttgggggccaaaactgctacaagtgcaaaacttag 86655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 10439458 - 10439426
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcag 74  Q
    ||||||| |||||||||||||||||||||||||    
T  10439458 acacgtggcacctcacttagggtgtcacgtcag 10439426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 12759648 - 12759704
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgac 96  Q
    ||||| ||| |||||||||||||||||||||||||| || |  | ||||||||||||    
T  12759648 taacatgtggcacctcacttagggtgtcacgtcagcctagatcgagtcaaaattgac 12759704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 25154447 - 25154495
Alignment:
Q  165 caaaatcgcaactttgaaaaagttagggg-ttaaaactgctattaagcc 212  Q
    ||||||| ||||||||  ||||||||||| |||||||||||||||||||    
T  25154447 caaaatcacaactttggtaaagttagggggttaaaactgctattaagcc 25154495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #61
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 209
Target Start/End: Original strand, 36677783 - 36677827
Alignment:
Q  166 aaaatcgcaactttg-aaaaagttaggggttaaaactgctattaa 209  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||    
T  36677783 aaaatcgcaactttggaaaaatttagggggtaaaactgctattaa 36677827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 53 - 146
Target Start/End: Original strand, 46228 - 46321
Alignment:
Q  53 ctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgta 146  Q
    ||||||||||||| |||||||||||| |||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  46228 ctcacttagggtgccacgtcagcgtagactgagtcaaaattgaccttgggggccaaaactgtcacagatgcaaaacttagagggcagttttgta 46321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 40 - 209
Target Start/End: Original strand, 36580415 - 36580585
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| ||||||| |||||||| |||||||||||| || | |||||||||||| ||||||| |||||||| |||| ||||||||||||| ||||||    
T  36580415 taacacgtgacacctcatttagggtgccacgtcagcgtagaccgagtcaaaattgactttgggggccaaaactgccacaaatgcaaaacttagggggcgg 36580514  T
Q  140 ttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagtt-aggggttaaaactgctattaa 209  Q
    ||||||||       |||  ||   |||||||||||||||||||||||| | ||||||||||| |||||||    
T  36580515 ttttgtagcttttttcttgaaggatcaaaatcgcaactttgaaaaagttaaagggttaaaactactattaa 36580585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 40 - 209
Target Start/End: Complemental strand, 18504417 - 18504246
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    |||||||||  ||||||||||||||| |||||||||||| |||| |||||||||| | || | || |||||||| |||| ||||||||||||| ||||||    
T  18504417 taacacgtggaacctcacttagggtgccacgtcagcgtagactgagtcaaaattggccttagaggccaaaactgccacatatgcaaaacttagggggcgg 18504318  T
Q  140 ttttgtag-nnnnnnnctta-gagtgccaaaatcgcaactttgaaaaagttaggggttaaaactgctattaa 209  Q
    ||||||||        |||| | | ||||||||| ||||||| |||||||||||||||||||||||||||||    
T  18504317 ttttgtagtattttttcttaggggggccaaaatcacaactttaaaaaagttaggggttaaaactgctattaa 18504246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 35250292 - 35250119
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| ||||||||||| |||| |||||||| ||| || | |||||||||| | ||||||  ||||||||||| ||||||||||||||||||||||    
T  35250292 taacacgtggcacctcacttaaggtgccacgtcagtgtagaccgagtcaaaattggccttggggtccaaaactgtcaaagatgcaaaacttagagggcgg 35250193  T
Q  140 ttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagttag-gggttaaaactgctattaagcc 212  Q
    |||| |||       ||||  |  ||||||||||||||||| ||||||||| ||| ||||||| ||||||||||    
T  35250192 ttttatagtttttttcttaagggaccaaaatcgcaactttggaaaagttagagggctaaaactactattaagcc 35250119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 212
Target Start/End: Original strand, 28785895 - 28786071
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| ||||||||||||||||||||||||||||| || | |||||||||  | |||||||||||||||| || | ||||||||||||  |||| |    
T  28785895 taacacgtggcacctcacttagggtgtcacgtcagcgtagaccgagtcaaaattagccttgggggtcaaaactgccataaatgcaaaacttatggggcag 28785994  T
Q  140 ttttgtag----nnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    ||||||||           |||| || ||||||||| |||||||| |||||||| |||||||||||||||||||||||    
T  28785995 ttttgtagttttttttcttctta-agggccaaaatcacaactttggaaaagttatggggttaaaactgctattaagcc 28786071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 50 - 212
Target Start/End: Original strand, 17931880 - 17932040
Alignment:
Q  50 cacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtagnn 149  Q
    |||||||||||||||| |||||||||||| ||   ||||||||||| ||| |||  |||||||| ||||||||||||| |||||||||| |||||||       
T  17931880 cacctcacttagggtgccacgtcagcgtagacaaagtcaaaattgatatttgggaccaaaactgacacagatgcaaaatttagagggcgattttgta--- 17931976  T
Q  150 nnnnncttagagtgccaaaatcgcaactttgaaaaagttagg-ggttaaaactgctattaagcc 212  Q
          |||||| |||||||||||||||||| |||||| ||| || ||||||||||||||||||    
T  17931977 ttttttttagagggccaaaatcgcaactttggaaaagtgaggaggctaaaactgctattaagcc 17932040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 41243816 - 41243644
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    |||||| || |||||||||||||||| ||||||| |||| || | |||||||||| | ||||||   ||||||| |||| ||||||||||||| ||||||    
T  41243816 taacacatgacacctcacttagggtgccacgtcaacgtagaccgagtcaaaattggccttggggacaaaaactgccacaaatgcaaaacttag-gggcgg 41243718  T
Q  140 ttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    ||||||||       ||||| | || ||||| ||||||||| |||||||| |||| ||||||||||||||||||    
T  41243717 ttttgtagtttttttcttagggggctaaaattgcaactttggaaaagttagggggctaaaactgctattaagcc 41243644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 40 - 146
Target Start/End: Original strand, 29834291 - 29834397
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||| ||| ||||||||||||||||||||||||||||  || | ||| |||||||| |||||||  |||| |||||||| |||||||||||| ||||||    
T  29834291 taacatgtggcacctcacttagggtgtcacgtcagcgtggaccgagtctaaattgaccttgggggagaaaattgtcacaggtgcaaaacttagggggcgg 29834390  T
Q  140 ttttgta 146  Q
    |||||||    
T  29834391 ttttgta 29834397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 40 - 208
Target Start/End: Original strand, 21505758 - 21505927
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||||||||||||||||||||||| |||| |||| ||||||| || | ||||| | |||||||| || | ||||||| | ||| |||| |    
T  21505758 taacacgtgacacctcacttagggtgtcacgtcaacgtagactgagtcaaaa-tggccttgggagccaaaactgccatatatgcaaagcatagggggcag 21505856  T
Q  140 ttttgtag-nnnnnnncttagagtgccaaaatcgcaactttgaaaaagttagggg-ttaaaactgctatta 208  Q
    ||||||||        ||||| | |||||||||||||||||||||||||||||||  ||||||||||||||    
T  21505857 ttttgtagttttttttcttagggggccaaaatcgcaactttgaaaaagttaggggactaaaactgctatta 21505927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 43 - 147
Target Start/End: Original strand, 6726398 - 6726501
Alignment:
Q  43 cacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttt 142  Q
    |||||| |||||||||||||||| ||||||||||||||||| |||||||||| | ||||||| |||||||| ||||  |||||||||||| ||| | |||    
T  6726398 cacgtggcacctcacttagggtgccacgtcagcgtaaactgagtcaaaattgtccttggggg-caaaactgccacatgtgcaaaacttagggggtgattt 6726496  T
Q  143 tgtag 147  Q
    |||||    
T  6726497 tgtag 6726501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 40 - 212
Target Start/End: Original strand, 15107132 - 15107303
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||| ||| |||||||||||||||| ||| |||| ||| || | |||||||||| |||||| || |||||||| |||| ||||||||||||| | ||||    
T  15107132 taacatgtggcacctcacttagggtgccacatcagtgtagaccgagtcaaaattggcattggaggccaaaactgccacaaatgcaaaacttagggagcgg 15107231  T
Q  140 ttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    ||||||||        |||| | |||||||||| ||||||| |||| ||| |||| ||||||||||||||||||    
T  15107232 ttttgtagtttttt--ttagggggccaaaatcgtaactttggaaaaattaggggggtaaaactgctattaagcc 15107303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 40 - 209
Target Start/End: Original strand, 18186591 - 18186763
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    |||| |||| |||||||||||||||| ||||||| |||| |||| |||||||||| | ||||||  |||||||| |||||||||||||||||  || |||    
T  18186591 taacccgtggcacctcacttagggtgccacgtcaacgtagactgagtcaaaattggccttggggaccaaaactgccacagatgcaaaacttaagggacgg 18186690  T
Q  140 ttttgtag--nnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaa 209  Q
    |||| |||         ||||| | | |||||||| ||||||| |||||||| |||| |||||||||||||||    
T  18186691 ttttatagtttttttttcttagggggtcaaaatcgtaactttggaaaagttagggggctaaaactgctattaa 18186763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 41 - 211
Target Start/End: Complemental strand, 28472560 - 28472391
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggt 140  Q
    |||| ||| ||||||| | |||||||||||||| |||| || |  |||||||||   |||||||  ||||||| |||| | |||||||||| |||||| |    
T  28472560 aacatgtggcacctcattcagggtgtcacgtcaacgtagaccgaatcaaaattggtcttgggggcgaaaactgccacataagcaaaacttatagggcgat 28472461  T
Q  141 tttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagttaggggttaaaactgctattaagc 211  Q
    |||||||       ||||| | | |||||||||||||||| |||||||||||| |||||||||||||||||    
T  28472460 tttgtagtttttt-cttagggggtcaaaatcgcaactttggaaaagttaggggctaaaactgctattaagc 28472391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 41 - 147
Target Start/End: Complemental strand, 4049882 - 4049775
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaa-acttagagggcgg 139  Q
    |||||||| |||||||||||||||| |||||||||||| |  | |||||||||| | ||| |||||||||||| |||||||||||| |||||| |  |||    
T  4049882 aacacgtggcacctcacttagggtgccacgtcagcgtagatcgagtcaaaattggccttgagggtcaaaactgccacagatgcaaagacttagggaacgg 4049783  T
Q  140 ttttgtag 147  Q
    ||||||||    
T  4049782 ttttgtag 4049775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 15029234 - 15029058
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| ||  ||||||| |||||||||||||| |  || | |||||||||||| ||||||| |||||||| ||||  |||||||||||| ||||||    
T  15029234 taacacgtggcatttcacttaaggtgtcacgtcagcatggac-gagtcaaaattgaccttgggggccaaaactgccacatgtgcaaaacttagggggcgg 15029136  T
Q  140 ttttgtag-nnnnnnncttagagtgccaaaatcgcaactttgaaaaagttagg----ggttaaaactgctattaagcc 212  Q
    ||||||||         |||| | | |||||||||||||||| ||||||||||    |||||||||||||||||||||    
T  15029135 ttttgtagttttttttattagggggtcaaaatcgcaactttggaaaagttaggggttggttaaaactgctattaagcc 15029058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 36903436 - 36903330
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||| ||| |||||||||||||||| || ||||||||| || | |||||||||| | ||| ||| |||||||| |||||||| ||||||||| ||||||    
T  36903436 taacatgtggcacctcacttagggtgccatgtcagcgtagaccgagtcaaaattggccttgagggccaaaactgccacagatggaaaacttag-gggcgg 36903338  T
Q  140 ttttgtag 147  Q
    ||||||||    
T  36903337 ttttgtag 36903330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 15348113 - 15348018
Alignment:
Q  51 acctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag 147  Q
    ||||||||||||||| ||| |||||||| || | |||||||||||| ||||||| || ||||  |||||||||||||||||| ||| ||||||||||    
T  15348113 acctcacttagggtgccacatcagcgtagaccgagtcaaaattgaccttgggggccataacttccacagatgcaaaacttag-gggtggttttgtag 15348018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 20185090 - 20184916
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||| | ||||||||||||| ||  || |||||||| || | |||||||||||| ||||||| |||||||| |||| ||||||||||||   |||||    
T  20185090 taacacgcgacacctcacttagg-tgctacatcagcgtagaccgagtcaaaattgaccttgggggccaaaactggcacatatgcaaaacttaagaggcgg 20184992  T
Q  140 ttttgtag--nnnnnnncttagagtgccaaaatcgcaactttgaaaaagttaggg-gttaaaactgctattaagcc 212  Q
    ||||||||         ||||| | || ||||||||||||||| ||||||||||| | |||||||| |||||||||    
T  20184991 ttttgtagtttttttttcttagggggctaaaatcgcaactttggaaaagttagggagctaaaactgttattaagcc 20184916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 59 - 210
Target Start/End: Complemental strand, 47909848 - 47909696
Alignment:
Q  59 tagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtagnnnnnnnctta 158  Q
    |||||| ||| ||||||||| || | |||||||||||| |||   | ||||| || |||||||||||||||||| ||||| ||||||||       ||||    
T  47909848 tagggtatcatgtcagcgtagaccgagtcaaaattgaccttgaaagccaaaattgccacagatgcaaaacttagggggcgattttgtagtttttttctta 47909749  T
Q  159 gagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaag 210  Q
    | | || |||||||||||||||  ||||||| |||| ||||||||||||||||    
T  47909748 gggggctaaaatcgcaactttgggaaagttagggggctaaaactgctattaag 47909696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 41 - 131
Target Start/End: Complemental strand, 8074047 - 8073957
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaactta 131  Q
    |||||||| |||||||||||| ||| |||||||||| | || |  ||||||||| | ||||||| |||||||| |||| ||||||||||||    
T  8074047 aacacgtggcacctcacttagagtgccacgtcagcgaagaccgaatcaaaattggccttgggggccaaaactgccacatatgcaaaactta 8073957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 36903531 - 36903581
Alignment:
Q  163 gccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  36903531 gccaaaatcgcaacattgaaaaagttagggggttaaaactgctattaagcc 36903581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 147
Target Start/End: Complemental strand, 3382013 - 3381929
Alignment:
Q  62 ggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag 147  Q
    |||||||| |||||||| || | ||||||||| || ||||||  |||||||| |||| ||||||||||||| ||||||||||||||    
T  3382013 ggtgtcacatcagcgtacaccgagtcaaaattaaccttggggc-caaaactgccacatatgcaaaacttagggggcggttttgtag 3381929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 14247569 - 14247614
Alignment:
Q  167 aaatcgcaactttgaaaaagttaggggttaaaactgctattaagcc 212  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||    
T  14247569 aaatcgcaactttggaaaagttaggggataaaactgctattaagcc 14247614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 42256630 - 42256582
Alignment:
Q  166 aaaatcgcaactttgaaaaagtta--ggggttaaaactgctattaagcc 212  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||    
T  42256630 aaaatcgcaactttgaaaaagttaggggggttaaaactgctattaagcc 42256582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 12905791 - 12905839
Alignment:
Q  164 ccaaaatcgcaactttgaaaaagttaggggttaaaactgctattaagcc 212  Q
    ||||||||||||||||||||||||||||||  |||||| ||||||||||    
T  12905791 ccaaaatcgcaactttgaaaaagttaggggccaaaactactattaagcc 12905839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 45718046 - 45717978
Alignment:
Q  66 tcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagag 134  Q
    |||||||| |||| || | |||||||||||  || ||||||||||||| ||||||||||||||||||||    
T  45718046 tcacgtcaacgtagaccgagtcaaaattgatcttaggggtcaaaactgacacagatgcaaaacttagag 45717978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 193
Target Start/End: Original strand, 28350307 - 28350436
Alignment:
Q  62 ggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtagnnnnnnncttagag 161  Q
    |||||||||| |||||| || | |||||||||| | ||||||  |||||||| ||||| |||||||||||| ||||||||||||||       ||||| |    
T  28350307 ggtgtcacgttagcgtagacagagtcaaaattggccttggggc-caaaactgccacaggtgcaaaacttag-gggcggttttgtagtttttttcttaggg 28350404  T
Q  162 tgccaaaatcgcaactttgaaaaagttagggg 193  Q
     |||||| ||||||||| |  |||||||||||    
T  28350405 ggccaaagtcgcaacttcgtgaaagttagggg 28350436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 212
Target Start/End: Complemental strand, 28350245 - 28350116
Alignment:
Q  85 gtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag-nnnnnnncttagagtgccaaaatcgcaactttgaaa 183  Q
    ||||||||||   ||||||| |||||||| |||||  ||||||||||| ||||||||||||||        ||||| | |||||||||| ||||| |  |    
T  28350245 gtcaaaattggtcttgggggccaaaactgccacaggggcaaaacttagggggcggttttgtagttttttttcttagggggccaaaatcgtaacttcgtga 28350146  T
Q  184 aagtta-ggggttaaaactgctattaagcc 212  Q
    |||||| |||| ||||||||||||||||||    
T  28350145 aagttagggggctaaaactgctattaagcc 28350116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 16879408 - 16879373
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcgt 77  Q
    ||||||| ||||||||||||||||||||||||||||    
T  16879408 acacgtggcacctcacttagggtgtcacgtcagcgt 16879373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 20505226 - 20505147
Alignment:
Q  58 ttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggc 137  Q
    |||||||| |||||||||||| || | |||||||||||| |||| |   ||||| ||| |||||||||||||||| ||||    
T  20505226 ttagggtgccacgtcagcgtagaccgagtcaaaattgaccttggagtctaaaaccgtcgcagatgcaaaacttagggggc 20505147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 38879333 - 38879286
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaa 89  Q
    ||||||| |||||||||||||||| |||||||||||  ||||||||||    
T  38879333 acacgtgacacctcacttagggtgccacgtcagcgttgactgggtcaa 38879286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 6792061 - 6792107
Alignment:
Q  164 ccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaa 209  Q
    ||||||||||||||||| |||||||| |||| |||||||||||||||    
T  6792061 ccaaaatcgcaactttggaaaagttagggggctaaaactgctattaa 6792107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 3318367 - 3318318
Alignment:
Q  164 ccaaaatcgcaactttgaaaaagtt-aggggttaaaactgctattaagcc 212  Q
    ||||||||||||||||| ||||||| ||||| ||||||| ||||||||||    
T  3318367 ccaaaatcgcaactttggaaaagttaaggggctaaaactcctattaagcc 3318318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 3319216 - 3319179
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgt 77  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  3319216 taacacgtggcacctcacttagggtgccacgtcagcgt 3319179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 5172685 - 5172588
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggc 137  Q
    |||||| || ||||||||||||||||  | |||| |||| || | |||| |||||   ||||| |  ||||||| |||||||||||||||||||||||    
T  5172685 taacacatggcacctcacttagggtgcaatgtcaacgtagaccgagtcataattggttttgggagctaaaactgccacagatgcaaaacttagagggc 5172588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 19644966 - 19644885
Alignment:
Q  50 cacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaactta 131  Q
    ||||||||||| |||| |||||||||||| ||||||| |||||||   |||| || ||||||||  |||| || ||||||||    
T  19644966 cacctcacttacggtgccacgtcagcgtagactgggttaaaattggtcttggaggccaaaactgctacagttgtaaaactta 19644885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 127
Target Start/End: Complemental strand, 23826175 - 23826106
Alignment:
Q  58 ttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaa 127  Q
    |||||| |||||||||||||| || |  ||||||||||  ||||||| |||||||| |||| ||||||||    
T  23826175 ttagggcgtcacgtcagcgtagaccgaatcaaaattgatcttgggggccaaaactgccacaaatgcaaaa 23826106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 146
Target Start/End: Original strand, 36801761 - 36801846
Alignment:
Q  61 gggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgta 146  Q
    ||||| |||||||||| | |||  ||||||| ||||||||||||||||||||| || |||| ||| || ||| |||  ||||||||    
T  36801761 gggtgccacgtcagcgaagactaagtcaaaagtgacattgggggtcaaaactgccaaagatccaatacatagggggttgttttgta 36801846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 212
Target Start/End: Original strand, 4049922 - 4050035
Alignment:
Q  100 gggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagtt-aggggttaaa 198  Q
    ||||| ||||||||  |||| |||||| ||||| ||||||||||||||       ||||| | ||||||||| |||||| |  |||||| |||||  |||    
T  4049922 gggggccaaaactgctacagttgcaaaccttagggggcggttttgtagtttttttcttagggggccaaaatcacaacttcgtgaaagttaaggggcgaaa 4050021  T
Q  199 actgctattaagcc 212  Q
    ||||||||||||||    
T  4050022 actgctattaagcc 4050035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 25987063 - 25987099
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgt 77  Q
    |||||||| |||||||||||||||| |||||||||||    
T  25987063 aacacgtggcacctcacttagggtgccacgtcagcgt 25987099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 46)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 40 - 212
Target Start/End: Original strand, 27904623 - 27904797
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||||||||||||||| |||||||||||| || | ||||||||||   ||||||| |||||||| ||||  |||||||||||| ||||||    
T  27904623 taacacgtggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggtcttgggggacaaaactgccacaagtgcaaaacttagggggcgg 27904722  T
Q  140 ttttgtag-nnnnnnncttagagtgccaaaatcgcaactttgaaaaagttag-gggttaaaactgctattaagcc 212  Q
    ||||||||        ||||  | |||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  27904723 ttttgtagttttttttcttacggggccaaaatcgcaactttgaaaaagttagagggctaaaactgctattaagcc 27904797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 40 - 212
Target Start/End: Original strand, 12406180 - 12406354
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||||||||||||||| |||||||||||| |||| |||||||||| | ||||||| |||||||| |||||||| ||||||||| ||||||    
T  12406180 taacacgtggcacctcacttagggtgccacgtcagcgtagactgagtcaaaattggccttgggggccaaaactgccacagatgtaaaacttagggggcgg 12406279  T
Q  140 ttttgtag--nnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    |||||| |         ||||| | ||||||||| ||||||||||||||||| |||| ||||| ||||||||||||    
T  12406280 ttttgttgtttttttttcttag-gggccaaaatctcaactttgaaaaagttagggggctaaaattgctattaagcc 12406354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 40 - 212
Target Start/End: Original strand, 3333841 - 3334015
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    |||||| || |||||||||||||||| |||||||||||| || | |||||||||||| ||||||| |||||||| |||| ||||||||||||  | ||||    
T  3333841 taacacatggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattgaccttgggggccaaaactgccacatatgcaaaacttatggagcgg 3333940  T
Q  140 ttttgtag-nnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    ||||||||        ||||| | |||||||||||||||||| |||||||| |||| ||||||| ||||||||||    
T  3333941 ttttgtagtttttcttcttagggggccaaaatcgcaactttggaaaagttagggggctaaaactactattaagcc 3334015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 40 - 212
Target Start/End: Original strand, 32391859 - 32392033
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||| ||| |||||||||||||||| |||||||||||| || | ||||||||||   ||||  ||||||||||||||| ||||||||||||  ||||||    
T  32391859 taacatgtggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggtcttggatgtcaaaactgtcacacatgcaaaacttaaggggcgg 32391958  T
Q  140 ttttgtag-nnnnnnncttagagtgccaaaatcgcaactttgaaaaagttaggg-gttaaaactgctattaagcc 212  Q
    ||||||||        ||||| | || ||||||||||||||||||||||||||| |||||||| |||||||||||    
T  32391959 ttttgtagttttttttcttagggggctaaaatcgcaactttgaaaaagttagggagttaaaacagctattaagcc 32392033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 50 - 145
Target Start/End: Complemental strand, 2974797 - 2974702
Alignment:
Q  50 cacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgt 145  Q
    |||||||||||||||| |||||||||||| || | |||||||||| ||||||||| |||||||| |||||||||||||||||| ||||||||||||    
T  2974797 cacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggcattgggggccaaaactgccacagatgcaaaacttagggggcggttttgt 2974702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 25910897 - 25910721
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||| ||| |||||||||||||||| |||||||||||| || | |||||||||||| ||||||| |||||||| ||||| ||||||| |||||||| ||    
T  25910897 taacatgtgacacctcacttagggtgccacgtcagcgtagaccgagtcaaaattgaccttgggggccaaaactgccacaggtgcaaaatttagagggtgg 25910798  T
Q  140 ttttgtag----nnnnnnncttagagtgccaaaatcgcaactttgaaaaagttaggggttaaaactgctattaagcc 212  Q
    ||||||||           ||||| | ||||||||| ||||||| | ||||||||||| |||||||| |||||||||    
T  25910797 ttttgtagtttttgtttttcttagggggccaaaatcacaactttaagaaagttagggggtaaaactgttattaagcc 25910721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 43 - 209
Target Start/End: Complemental strand, 18403157 - 18402989
Alignment:
Q  43 cacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttt 142  Q
    |||||| |||||||||||||||| ||||||| |||| |||| ||||||||||   |||||||||||||||| || ||||||||||||||| | | | |||    
T  18403157 cacgtgacacctcacttagggtgccacgtcaacgtagactgagtcaaaattggtcttgggggtcaaaactgccagagatgcaaaacttagggagtgattt 18403058  T
Q  143 tgtag--nnnnnnncttagagtgccaaaatcgcaactttgaaaaagttaggggttaaaactgctattaa 209  Q
    |||||         ||||||| ||||||||  ||||||||||||| ||||||||||||||| |||||||    
T  18403057 tgtagtttttttttcttagagggccaaaattacaactttgaaaaaattaggggttaaaactactattaa 18402989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 35166469 - 35166297
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||| ||| ||||||||||||||||||| ||||||||| || | ||||||||||||||||  || |||||| | ||||  |||||||||||| |||||     
T  35166469 taacatgtggcacctcacttagggtgtcatgtcagcgtagaccgagtcaaaattgacattgaaggccaaaaccgccacatgtgcaaaacttagggggcga 35166370  T
Q  140 ttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagttaggggttaaaactgctattaagcc 212  Q
    ||||||||       ||||| | | ||||||||||| |||| ||||||||  || ||||||||||||||||||    
T  35166369 ttttgtagtttttttcttagggggtcaaaatcgcaattttggaaaagttaaaggctaaaactgctattaagcc 35166297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 211
Target Start/End: Original strand, 43098167 - 43098337
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||| | |||||||||||||||| |||||||||||| |||| ||||||||||| || ||||| ||||||||  |||| |||||||||||| | ||||    
T  43098167 taacacgcggcacctcacttagggtgccacgtcagcgtagactgagtcaaaattgatatcgggggccaaaactgctacaggtgcaaaacttag-gcgcgg 43098265  T
Q  140 ttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagttagggg-ttaaaactgctattaagc 211  Q
    ||||||||        |||| | || ||||||| ||||||||||||||||||||  |||||||||||||||||    
T  43098266 ttttgtagttttttt-ttagggggcaaaaatcgtaactttgaaaaagttaggggactaaaactgctattaagc 43098337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 41 - 147
Target Start/End: Original strand, 40276170 - 40276276
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggt 140  Q
    |||| ||| ||||||||||||||||||||||||||||| || |||||||||||  | ||||||||||||| || |||| ||||||||||||| || ||||    
T  40276170 aacatgtggcacctcacttagggtgtcacgtcagcgtagaccgggtcaaaattagccttgggggtcaaaattgccacatatgcaaaacttaggggacggt 40276269  T
Q  141 tttgtag 147  Q
    |||||||    
T  40276270 tttgtag 40276276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 40 - 209
Target Start/End: Complemental strand, 31080650 - 31080480
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||||||||||||||| ||||||||| || || | || ||||||| | ||||||| |||||||| |||||||||||||||||| ||| ||    
T  31080650 taacacgtggcacctcacttagggtgccacgtcagcatagaccgagttaaaattggccttgggggccaaaactgccacagatgcaaaacttagggggtgg 31080551  T
Q  140 ttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagttag-gggttaaaactgctattaa 209  Q
    ||||||||        ||||   | |||||||||||||||| ||||||||| ||| |||||||| ||||||    
T  31080550 ttttgtagttttttttttaggaggtcaaaatcgcaactttggaaaagttagagggctaaaactgatattaa 31080480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 9852960 - 9852853
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||||||||||||||| |||||||||||| |    |||||||||| | ||||| | |||||||| |||||||||||||||||| |||||     
T  9852960 taacacgtggcacctcacttagggtgccacgtcagcgtagatcaagtcaaaattggccttgggagccaaaactgccacagatgcaaaacttagggggcga 9852861  T
Q  140 ttttgtag 147  Q
    ||||||||    
T  9852860 ttttgtag 9852853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 61 - 147
Target Start/End: Original strand, 19131661 - 19131747
Alignment:
Q  61 gggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag 147  Q
    ||||| |||||||||||| || | |||||||||| | || |||| ||||||||||||||||||||||||||| ||||||||||||||    
T  19131661 gggtgccacgtcagcgtagaccgagtcaaaattggccttcggggccaaaactgtcacagatgcaaaacttagggggcggttttgtag 19131747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 22300774 - 22300601
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||| ||| |||||||||||||||| ||||||| |||| || | ||||||||||   ||||  |||||||||| |||| || |||||||||  || |||    
T  22300774 taacatgtggcacctcacttagggtgccacgtcaacgtagaccgagtcaaaattggtcttggaagtcaaaactgccacatatacaaaacttaagggacgg 22300675  T
Q  140 ttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagttag-gggttaaaactgctattaagcc 212  Q
    ||||||||        |||| |||||||||||||||||||  ||||||||| ||| ||||||| ||||||||||    
T  22300674 ttttgtagttttttttttagggtgccaaaatcgcaactttagaaaagttagagggctaaaactactattaagcc 22300601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 40 - 127
Target Start/End: Complemental strand, 26563162 - 26563075
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaa 127  Q
    ||||||||| |||||||| ||||||| |||||||||| |||| | |||||||||||| ||||||| ||||| || |||||||||||||    
T  26563162 taacacgtggcacctcacgtagggtgccacgtcagcggaaaccgagtcaaaattgaccttgggggccaaaattgccacagatgcaaaa 26563075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 36798344 - 36798170
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||| ||| |||||||||||| ||| |||||||| ||| || | |||||| | | | ||||||| |||||||| |||||||||||||||||| ||| ||    
T  36798344 taacatgtggcacctcacttagagtgccacgtcagtgtagaccgagtcaaattggtc-ttgggggccaaaactgccacagatgcaaaacttagggggtgg 36798246  T
Q  140 ttttgtag--nnnnnnncttagagtgccaaaatcgcaactttgaaaaagttaggggt-taaaactgctattaagcc 212  Q
    ||||||||         ||||| | |||||||| ||||||||| |||||||| |||| ||||||||||||||||||    
T  36798245 ttttgtagtttttttttcttagggggccaaaattgcaactttggaaaagttaagggtctaaaactgctattaagcc 36798170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 52 - 210
Target Start/End: Original strand, 37897870 - 37898029
Alignment:
Q  52 cctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtagnnnn 151  Q
    ||||||||| ||||  |||||||| || || | ||||||||||   |||| || |||||||| |||| ||||||||||||| ||||||||||||||        
T  37897870 cctcacttaaggtgctacgtcagcatagaccgagtcaaaattggtcttggaggccaaaactgccacatatgcaaaacttag-gggcggttttgtagtttt 37897968  T
Q  152 nnn-cttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaag 210  Q
        ||||| | ||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  37897969 ttttcttagggggccaaaatcgcaactttgaaaaagttagggggctaaaactgctattaag 37898029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 146
Target Start/End: Complemental strand, 20512370 - 20512264
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||||||||||||||| || || |||||| || | ||||||||||   |||||||||||||||  ||||| |||||||||||| |||| |    
T  20512370 taacacgtggcacctcacttagggtgccatgttagcgtagaccgagtcaaaattggtcttgggggtcaaaactaccacaggtgcaaaacttagggggcag 20512271  T
Q  140 ttttgta 146  Q
    |||||||    
T  20512270 ttttgta 20512264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 40 - 210
Target Start/End: Original strand, 20629884 - 20630057
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||||||||||||||| |||||||||||| |  | ||||||||||    ||| || |||||||  |||| ||||||||||||| ||||||    
T  20629884 taacacgtggcacctcacttagggtgccacgtcagcgtagatcgagtcaaaattggtcctggaggccaaaacttccacaaatgcaaaacttagggggcgg 20629983  T
Q  140 ttttgtag-nnnnnnncttagagtgccaaaatcgcaactttgaaaaagttagg--ggttaaaactgctattaag 210  Q
    ||||||||        ||||  | ||||||||| |||||||| ||||||||||  || ||||||||||||||||    
T  20629984 ttttgtagttttttttcttaaggggccaaaatcacaactttggaaaagttagggaggctaaaactgctattaag 20630057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 212
Target Start/End: Complemental strand, 25363989 - 25363825
Alignment:
Q  50 cacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtagnn 149  Q
    ||||||| ||||||||||||||||||||| || |  ||||||||||| || |||| |||||||  ||||  |||||||||||| || | ||||||||       
T  25363989 cacctcatttagggtgtcacgtcagcgtagaccgaatcaaaattgacttttggggccaaaactaccacaattgcaaaacttaggggacagttttgtaact 25363890  T
Q  150 nnnnn--cttagagtgccaaaatcgcaactttgaaaaagttaggggttaaaactgctattaagcc 212  Q
           |||||   ||||||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  25363889 tttttttcttaggaggccaaaatcacaactttaaaaaagttaggggctaaaactgctattaagcc 25363825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 40 - 131
Target Start/End: Complemental strand, 28446178 - 28446087
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaactta 131  Q
    ||||||||| |||||||| |||||||||| ||||||||| || | |||||||||| | || |||| |||| |||||||| ||||||||||||    
T  28446178 taacacgtgacacctcacgtagggtgtcaggtcagcgtataccgagtcaaaattggccttaggggccaaagctgtcacaaatgcaaaactta 28446087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 30604237 - 30604334
Alignment:
Q  50 cacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag 147  Q
    |||||||||||||||| |||||||||||| || | |||||||||| | |   ||  |||||||| ||||| |||||||||||| ||||||||||||||    
T  30604237 cacctcacttagggtgccacgtcagcgtagacagagtcaaaattggcctacaggtgcaaaactgccacaggtgcaaaacttagggggcggttttgtag 30604334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 146
Target Start/End: Complemental strand, 16132918 - 16132812
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    |||||| || ||||||||||||| || ||| |||||||| ||   |||||||||| | ||||||  |||||||| || || |||||||||||| ||||||    
T  16132918 taacacatggcacctcacttaggatgccacatcagcgtagacaaagtcaaaattggccttggggaccaaaactgccataggtgcaaaacttagggggcgg 16132819  T
Q  140 ttttgta 146  Q
    |||||||    
T  16132818 ttttgta 16132812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 44 - 209
Target Start/End: Complemental strand, 24405659 - 24405493
Alignment:
Q  44 acgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggtttt 143  Q
    ||||| |||||||||||||| | ||||| ||| || || | |||||||||| |  |||||  |||||||| || |||||||||||||||  |||||||||    
T  24405659 acgtggcacctcacttagggagccacgttagcatagaccgagtcaaaattggccatggggc-caaaactgccaaagatgcaaaacttagttggcggtttt 24405561  T
Q  144 gtagnnnnnnn-cttagagtgccaaaatcgcaactttgaaaaagttagggg-ttaaaactgctattaa 209  Q
    ||||        || || | | |||||||||||||||||||||||||||||  |||||||||||||||    
T  24405560 gtagttttttttctcagggagtcaaaatcgcaactttgaaaaagttaggggactaaaactgctattaa 24405493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 146
Target Start/End: Complemental strand, 26702609 - 26702504
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||||||||||||||| ||||||||  || || |  |||||||||   ||||||| |||||||| |||| ||||||||||| | ||||||    
T  26702609 taacacgtggcacctcacttagggtgccacgtcaggatagaccgaatcaaaattggtcttgggggccaaaactgccacaaatgcaaaactt-gggggcgg 26702511  T
Q  140 ttttgta 146  Q
    |||||||    
T  26702510 ttttgta 26702504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 146
Target Start/End: Complemental strand, 26972342 - 26972237
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||||||||||||||| ||||||||  || || |  |||||||||   ||||||| |||||||| |||| ||||||||||| | ||||||    
T  26972342 taacacgtggcacctcacttagggtgccacgtcaggatagaccgaatcaaaattggtcttgggggccaaaactgccacaaatgcaaaactt-gggggcgg 26972244  T
Q  140 ttttgta 146  Q
    |||||||    
T  26972243 ttttgta 26972237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 212
Target Start/End: Complemental strand, 12406154 - 12406041
Alignment:
Q  100 gggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtagnnnnnnn-cttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaa 197  Q
    ||||| ||||||||| |||| |||||||||||| ||||||||||||||        ||||| | ||||||||||||||||||  ||||||| |||| |||    
T  12406154 gggggccaaaactgt-acagttgcaaaacttagggggcggttttgtagttttctttcttagggggccaaaatcgcaactttgggaaagttagggggctaa 12406056  T
Q  198 aactgctattaagcc 212  Q
    |||||||||||||||    
T  12406055 aactgctattaagcc 12406041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 3999238 - 3999330
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttag 132  Q
    ||||| ||| ||||||||||| |||| |||||||||||| ||   |||||||||| | ||||||| |||||||| |||| ||| |||||||||    
T  3999238 taacatgtggcacctcacttaaggtgccacgtcagcgtagaccaagtcaaaattggccttgggggccaaaactgccacatatgtaaaacttag 3999330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 19340904 - 19340996
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttag 132  Q
    ||||||||| ||||||| |||||||| ||||||| |||  || | |||||||||| | ||||||   ||||||| ||||||||||||||||||    
T  19340904 taacacgtggcacctcatttagggtgccacgtcaacgttgaccgagtcaaaattggctttggggactaaaactgccacagatgcaaaacttag 19340996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 36798441 - 36798490
Alignment:
Q  164 ccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    |||||||||||||||||| ||||||| |||| ||||||||||||||||||    
T  36798441 ccaaaatcgcaactttgagaaagttagggggctaaaactgctattaagcc 36798490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 211
Target Start/End: Complemental strand, 24779447 - 24779276
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| || ||||||| ||||| |||||||||||| || | ||||||||||   |||||   |||||||| || ||| |||||||||||| | |||    
T  24779447 taacacgtgacaactcacttggggtgccacgtcagcgtagaccgagtcaaaattggttttgggaaccaaaactgccatagaggcaaaacttaga-gacgg 24779349  T
Q  140 ttttgtag-nnnnnnncttagagtgccaaaatcgcaactttgaaaaagttagg-ggttaaaactgctattaagc 211  Q
    ||||||||        ||||| | | ||||||||||||||| ||||||||||| || ||||||| |||||||||    
T  24779348 ttttgtagttttttttcttagtg-gacaaaatcgcaactttaaaaaagttaggaggctaaaactactattaagc 24779276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 138
Target Start/End: Original strand, 34320097 - 34320185
Alignment:
Q  50 cacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcg 138  Q
    |||| |||| |||||| |||||||| ||| ||   |||||||||||| ||||||| |||||||| |||| ||| ||||||||| |||||    
T  34320097 caccccactaagggtgccacgtcagtgtagaccaagtcaaaattgactttgggggccaaaactgccacaaatgtaaaacttagggggcg 34320185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 35877431 - 35877356
Alignment:
Q  71 tcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag 147  Q
    |||||||| |||| |||||||||||  ||||||||| |||||| |||| || ||||||||||| | |||||||||||    
T  35877431 tcagcgtagactgagtcaaaattgatcttgggggtc-aaactgccacaaatacaaaacttagatgacggttttgtag 35877356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 211
Target Start/End: Complemental strand, 39574409 - 39574240
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||| ||| ||| ||||||| ||||||||||||||||| || | ||| ||||||   ||||||| |||||||| |||  ||||||||||||| ||| |     
T  39574409 taacatgtggcacgtcacttatggtgtcacgtcagcgtagaccgagtc-aaattggtcttgggggccaaaactgccac--atgcaaaacttagggggtga 39574313  T
Q  140 ttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagttag-gggttaaaactgctattaagc 211  Q
    |||| |||       ||||| | |||||||||||||||| |  |||||||| |||  ||||||||||||||||    
T  39574312 ttttatagtttttttcttagggagccaaaatcgcaacttcgtgaaagttagagggcgaaaactgctattaagc 39574240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 40132952 - 40132904
Alignment:
Q  165 caaaatcgcaactttgaaaaagttag-gggttaaaactgctattaagcc 212  Q
    |||||||||||||||||||||||||| ||  ||||||||||||||||||    
T  40132952 caaaatcgcaactttgaaaaagttagaggactaaaactgctattaagcc 40132904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 4096623 - 4096588
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcgt 77  Q
    ||||||| ||||||||||||||||||||||||||||    
T  4096623 acacgtggcacctcacttagggtgtcacgtcagcgt 4096588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 6130398 - 6130461
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggg 103  Q
    ||||| ||| |||||||||||||||||||||||| | || || | |||||||||||| ||||||    
T  6130398 taacatgtggcacctcacttagggtgtcacgtcaacatagaccgagtcaaaattgaccttgggg 6130461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 8284205 - 8284158
Alignment:
Q  163 gccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaa 209  Q
    |||||||||||||||||| |||||||| |||||||||| |||||||||    
T  8284205 gccaaaatcgcaactttggaaaagttatggggttaaaattgctattaa 8284158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 147
Target Start/End: Original strand, 9852973 - 9853032
Alignment:
Q  88 aaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag 147  Q
    ||||||||| ||||||| ||||||||  |||| |||||||||||| ||||||||| ||||    
T  9852973 aaaattgactttgggggccaaaactgatacagttgcaaaacttagggggcggtttagtag 9853032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 10029213 - 10029248
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcgt 77  Q
    ||||||| ||||||||||||||||||||||||||||    
T  10029213 acacgtggcacctcacttagggtgtcacgtcagcgt 10029248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 35306843 - 35306878
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcgt 77  Q
    ||||||| ||||||||||||||||||||||||||||    
T  35306843 acacgtggcacctcacttagggtgtcacgtcagcgt 35306878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 40133071 - 40133140
Alignment:
Q  62 ggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttag 132  Q
    |||| |||||||| ||| || |||||||||||| |||| |||| ||||||||||||| ||| |||||||||    
T  40133071 ggtgccacgtcagggtagaccgggtcaaaattggcatt-ggggccaaaactgtcacaaatgtaaaacttag 40133140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 31080686 - 31080727
Alignment:
Q  106 caaaactgtcacagatgcaaaacttagagggcggttttgtag 147  Q
    ||||||||  |||| |||||||||||||||||||||||||||    
T  31080686 caaaactgctacagttgcaaaacttagagggcggttttgtag 31080727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 31157043 - 31157080
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgta 78  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  31157043 aacaagtggcacctcacttagggtgtcacgtcagcgta 31157080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 34734212 - 34734249
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgt 77  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  34734212 taacacgtggcacctcacctagggtgtcacgtcagcgt 34734249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 35877483 - 35877527
Alignment:
Q  103 ggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag 147  Q
    ||||||||| || |||| |||||||||||| ||||||||||||||    
T  35877483 ggtcaaaaccgttacagttgcaaaacttagggggcggttttgtag 35877527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 70)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 2837073 - 2836899
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||||||||||||||| |||||||| ||| |||| |||||||||| | ||||||| ||||||| ||||| ||||||||||||| ||||||    
T  2837073 taacacgtggcacctcacttagggtgccacgtcagtgtagactgagtcaaaattggccttgggggccaaaactctcacacatgcaaaacttagggggcgg 2836974  T
Q  140 ttttgtag-nnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    ||||||||        ||| | | |||||||||||| ||||| |||||||| ||||||||||||| |||||||||    
T  2836973 ttttgtagttttttttctttgggggccaaaatcgcagctttggaaaagttagggggttaaaactgttattaagcc 2836899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 40 - 212
Target Start/End: Original strand, 44356538 - 44356710
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||||||||||||||| ||||| | |||| ||   ||||||||||   ||||||| |||||||| |||| ||||||||||||| ||||||    
T  44356538 taacacgtgacacctcacttagggtgccacgttatcgtagaccaagtcaaaattggtcttgggggccaaaactgccacatatgcaaaacttagggggcgg 44356637  T
Q  140 ttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagttaggggttaaaactgctattaagcc 212  Q
    |||||||        |||||   ||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  44356638 ttttgtaatttttttcttaggcggccaaaatcgcaactttgagaaagttaggggctaaaactgctattaagcc 44356710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 56 - 212
Target Start/End: Original strand, 8965672 - 8965824
Alignment:
Q  56 acttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtagnnnnnnnc 155  Q
    |||||||||| ||| ||| |||| || | |||||||||||||||||||  |||||||| |||||||||||||||||| |||||||||| |||       |    
T  8965672 acttagggtgccacatcaacgtagaccgagtcaaaattgacattggggaccaaaactgccacagatgcaaaacttagggggcggttttatag--tttttc 8965769  T
Q  156 ttagagtgccaaaatcgcaactttgaaaaagttaggggttaaaactgctattaagcc 212  Q
    ||  || ||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  8965770 tt--agggccaaaatcgcaactttgaaaaaattaggggttaaaattgctattaagcc 8965824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 41 - 212
Target Start/End: Complemental strand, 53312460 - 53312286
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggt 140  Q
    |||||||| |||||||||||||||| |||||||||||| |||| ||| |||||| | ||||||| |||||||| ||||  ||||||| |||| ||| |||    
T  53312460 aacacgtggcacctcacttagggtgccacgtcagcgtagactgagtccaaattggccttgggggccaaaactgccacatgtgcaaaatttagggggtggt 53312361  T
Q  141 tttgtag--nnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    |||||||         ||||| | ||||||||||||||||||||||||||| |||| ||||| ||||||||||||    
T  53312360 tttgtagtttgtttttcttagggggccaaaatcgcaactttgaaaaagttagggggctaaaaatgctattaagcc 53312286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 40 - 137
Target Start/End: Original strand, 43074728 - 43074825
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggc 137  Q
    ||||||||| |||||||||||||||| |||||||||||| |||| |||||||||| | ||||||| |||||||| |||||||||||||||||| ||||    
T  43074728 taacacgtggcacctcacttagggtgccacgtcagcgtagactgagtcaaaattggccttgggggccaaaactgccacagatgcaaaacttagggggc 43074825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 40 - 212
Target Start/End: Original strand, 14449424 - 14449599
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| ||||||||||| |||| ||||||||||||||| | |||||||||| | ||||||| |||||||| |||| ||||||||||||| | ||||    
T  14449424 taacacgtggcacctcacttatggtgccacgtcagcgtaaaccgagtcaaaattggccttgggggccaaaactgccacaaatgcaaaacttagggagcgg 14449523  T
Q  140 ttttgtag--nnnnnnnctt-agagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    ||||||||         ||| |||| |||||||||||||||||| |||||||| |||| ||||||| ||||||||||    
T  14449524 ttttgtagttttttttccttaagag-gccaaaatcgcaactttggaaaagttagggggctaaaactactattaagcc 14449599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 40 - 212
Target Start/End: Original strand, 20112290 - 20112463
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||||||||||| ||| |||||||||||  || | |||||||||| | ||||||| |||||||| |||| ||||||||||| | ||||||    
T  20112290 taacacgtggcacctcacttagagtgccacgtcagcgttgaccgagtcaaaattggctttgggggccaaaactgccacatatgcaaaactttgggggcgg 20112389  T
Q  140 ttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagttag-gggttaaaactgctattaagcc 212  Q
    ||||||||       ||| | | |||||||||||||||||| |||||||||  || |||||||| |||||||||    
T  20112390 ttttgtagtatttttctttgggggccaaaatcgcaactttggaaaagttagaaggctaaaactgttattaagcc 20112463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 50 - 212
Target Start/End: Original strand, 10059847 - 10060013
Alignment:
Q  50 cacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag-- 147  Q
    |||||||||||||||| ||||||| |||| || | |||||||||| | ||| ||| |||||||| |||||||||||||||||| ||||||||||||||      
T  10059847 cacctcacttagggtgccacgtcaacgtagaccgagtcaaaattggccttgagggccaaaactgccacagatgcaaaacttagggggcggttttgtagtt 10059946  T
Q  148 -nnnnnnncttagagtgccaaaatcgcaactttgaaaaagttaggggt-taaaactgctattaagcc 212  Q
            ||||  | || |||||||||||||||||||| |||||||| ||||||||||||||||||    
T  10059947 ttttttttcttaaggggcaaaaatcgcaactttgaaaaaattaggggtctaaaactgctattaagcc 10060013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 51 - 212
Target Start/End: Complemental strand, 2016954 - 2016791
Alignment:
Q  51 acctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag-nn 149  Q
    ||||||||||||||| |||||||||||| || | |||||||||| | ||||||| |||||||| ||||  |||||||||||| |||| |||||||||       
T  2016954 acctcacttagggtgccacgtcagcgtagaccgagtcaaaattggccttgggggccaaaactgccacatgtgcaaaacttagggggcagttttgtagtct 2016855  T
Q  150 nnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
         ||| ||| |||||||||||||||||| |||||||| |||| |||||||||||| |||||    
T  2016854 tttttctttgagggccaaaatcgcaactttggaaaagttagggggctaaaactgctatcaagcc 2016791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 40 - 146
Target Start/End: Complemental strand, 29697695 - 29697590
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||||||||||||||| |||||||||||| ||||||||||||||| | || ||   |||||||| |||||||||||||||||| ||||||    
T  29697695 taacacgtgacacctcacttagggtgccacgtcagcgtagactgggtcaaaattggcctt-ggaaccaaaactgccacagatgcaaaacttagggggcgg 29697597  T
Q  140 ttttgta 146  Q
    |||||||    
T  29697596 ttttgta 29697590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 40 - 212
Target Start/End: Original strand, 1420684 - 1420858
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||||||||||||||| |||||||||||  || | |||||||||| | |||||||||| ||||| |||| ||||||||||||  ||||||    
T  1420684 taacacgtggcacctcacttagggtgccacgtcagcgttgaccgagtcaaaattggccttgggggtcataactgccacaaatgcaaaacttatggggcgg 1420783  T
Q  140 ttttgtag-nnnnnnncttagagtgccaaaatcgcaactttgaaaaagtt-aggggttaaaactgctattaagcc 212  Q
    ||||||||        ||||| |  ||||||||| |||||||  |||||| ||||| ||||||||||||||||||    
T  1420784 ttttgtagttctttttcttaggggaccaaaatcgtaactttgggaaagttaaggggctaaaactgctattaagcc 1420858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 40 - 212
Target Start/End: Original strand, 52462928 - 52463101
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||||||||| |||||||||||||| ||| || |||| |||||||   ||||||| ||||||||||| |||||||||||||| ||||  |    
T  52462928 taacacgtgacacctcactttgggtgtcacgtcagtgtagaccgggttaaaattggttttgggggccaaaactgtcatagatgcaaaactta-aggggcg 52463026  T
Q  140 ttttgtag-nnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    ||||||||        |||||||  |||||||||||||||||||||| ||| |||| |||||||| |||||||||    
T  52463027 ttttgtagttttttttcttagaggcccaaaatcgcaactttgaaaaaattagggggctaaaactgttattaagcc 52463101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 40 - 143
Target Start/End: Original strand, 4796180 - 4796283
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||| ||| |||||||||||||||| |||||||||||| || | |||||||||||  ||||||| |||||||| ||||| ||||||||||| |||||||    
T  4796180 taacaagtggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattgattttgggggccaaaactgccacaggtgcaaaacttaaagggcgg 4796279  T
Q  140 tttt 143  Q
    ||||    
T  4796280 tttt 4796283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 41 - 212
Target Start/End: Original strand, 23759715 - 23759887
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggt 140  Q
    |||||||| |||||||||||||||| ||||||||| || |  | |||||||||| | |||| || |||||||||||||||| |||||||||| || ||||    
T  23759715 aacacgtggcacctcacttagggtgccacgtcagcttagatcgagtcaaaattggccttggaggccaaaactgtcacagatacaaaacttaggggacggt 23759814  T
Q  141 tttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagtt-aggggttaaaactgctattaagcc 212  Q
    |||||||       ||||| |  ||||||||||||||||   |||||| ||||||||||| || |||||||||    
T  23759815 tttgtagtttttttcttaggggaccaaaatcgcaactttatgaaagttaaggggttaaaattgttattaagcc 23759887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 50 - 209
Target Start/End: Complemental strand, 47999693 - 47999533
Alignment:
Q  50 cacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag-n 148  Q
    ||||||||||| |||| |||||||||||| || |  ||||||||| | || ||||||||||||| |||||||| ||||||||  | ||||||||||||      
T  47999693 cacctcacttaaggtgccacgtcagcgtagaccgaatcaaaattggccttaggggtcaaaactgccacagatgtaaaacttatggagcggttttgtagtt 47999594  T
Q  149 nnnnnncttagagtgccaaaatcgcaactttgaaaaagttaggggttaaaactgctattaa 209  Q
          ||||| | || |||||||||||||||||||| ||||| |||||||||||||||||    
T  47999593 ttttttcttagggggcaaaaatcgcaactttgaaaaaattaggagttaaaactgctattaa 47999533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 40 - 191
Target Start/End: Original strand, 53924891 - 53925042
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| || ||||||||||||||||| ||| |||| || | |||||||||||| ||| ||||||||||||||||| ||||||||||||| ||| |     
T  53924891 taacacgtgacatctcacttagggtgtcacatcaacgtagaccgagtcaaaattgaccttgagggtcaaaactgtcacaaatgcaaaacttagggggaga 53924990  T
Q  140 ttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagttagg 191  Q
    |||| |||       ||||| |  ||||||||||||||||  ||||||||||    
T  53924991 ttttatagtttttttcttaggggaccaaaatcgcaactttagaaaagttagg 53925042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 40 - 209
Target Start/End: Complemental strand, 27978865 - 27978695
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| ||| |||| | ||||| |||||||||||| || | |||||||||| | |||||||||||||||| |||| |||||||||||| | ||| |    
T  27978865 taacacgtggcacttcacgtggggtgccacgtcagcgtagaccgagtcaaaattggccttgggggtcaaaactgccacaaatgcaaaacttatatggcag 27978766  T
Q  140 ttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagttag-gggttaaaactgctattaa 209  Q
    |||||||        ||||| | | ||||||||||||||||| |||||||| ||| | |||||||||||||    
T  27978765 ttttgtaatttttttcttagggggtcaaaatcgcaactttgagaaagttagagggcttaaactgctattaa 27978695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 51362702 - 51362606
Alignment:
Q  51 acctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag 147  Q
    ||||||||||||||| |||||||| ||| |||| ||||||||||   ||||||| |||||||| |||| ||||||||||||| ||||||||||||||    
T  51362702 acctcacttagggtgccacgtcagtgtagactgagtcaaaattggtcttgggggccaaaactgccacatatgcaaaacttagggggcggttttgtag 51362606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 210
Target Start/End: Original strand, 21871527 - 21871696
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||| ||||||| |||||| ||||||||| || | || ||||||||  ||||||| |||||||  || |||||||||||||||  |||||    
T  21871527 taacacgtgacaccccacttagagtgtcatgtcagcgtagaccgagttaaaattgattttgggggccaaaactaccaaagatgcaaaacttaggaggcgg 21871626  T
Q  140 ttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaag 210  Q
    ||||||||        |||| | | ||||||||||||||||||||||||| |||| ||||| ||||||||||    
T  21871627 ttttgtagtttttt--ttagggggtcaaaatcgcaactttgaaaaagttagggggctaaaattgctattaag 21871696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 210
Target Start/End: Original strand, 21927388 - 21927557
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||| ||||||| |||||| ||||||||| || | || ||||||||  ||||||| |||||||  || |||||||||||||||  |||||    
T  21927388 taacacgtgacaccccacttagagtgtcatgtcagcgtagaccgagttaaaattgattttgggggccaaaactaccaaagatgcaaaacttaggaggcgg 21927487  T
Q  140 ttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaag 210  Q
    ||||||||        |||| | | ||||||||||||||||||||||||| |||| ||||| ||||||||||    
T  21927488 ttttgtagtttttt--ttagggggtcaaaatcgcaactttgaaaaagttagggggctaaaattgctattaag 21927557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 41 - 131
Target Start/End: Complemental strand, 51371636 - 51371546
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaactta 131  Q
    |||||||| ||||||| |||||||| |||||||| ||| || | ||||||||||||||||||||||||||||| || | ||||||||||||    
T  51371636 aacacgtggcacctcatttagggtgccacgtcagtgtagaccgagtcaaaattgacattgggggtcaaaactgccatatatgcaaaactta 51371546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 25909661 - 25909487
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| || || ||||| |||| |||||||||||| || | |||||||||| | ||||||| ||||||   ||||  |||||||||||| ||||||    
T  25909661 taacacgtggcatcttacttaaggtgccacgtcagcgtagaccgagtcaaaattggccttgggggccaaaacctccacaagtgcaaaacttagggggcgg 25909562  T
Q  140 ttttgtag-nnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    |||| |||        ||||| | ||||||||| |||||||| |||||||| |||||||||||||||||||||||    
T  25909561 ttttatagttttttttcttagggggccaaaatcacaactttggaaaagttagggggttaaaactgctattaagcc 25909487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 2654125 - 2654216
Alignment:
Q  56 acttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag 147  Q
    |||||||||| |||||||||||| ||   |||||||||| | |||||||||||||||| |||| ||||||||||||| |||| |||||||||    
T  2654125 acttagggtgccacgtcagcgtagaccaagtcaaaattggccttgggggtcaaaactgccacatatgcaaaacttagggggcagttttgtag 2654216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 40 - 212
Target Start/End: Original strand, 12719585 - 12719760
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||| ||| |||||||||| ||||| ||| |||||||| || | ||||||||||   |||| || |||||||| |||||||||||||||||| ||| ||    
T  12719585 taacatgtggcacctcacttggggtgccacatcagcgtagaccgagtcaaaattggtcttggaggccaaaactgccacagatgcaaaacttagggggtgg 12719684  T
Q  140 ttttgtag--nnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    ||||||||         ||||| | ||||||||  ||||||||  ||||||| |||||||||||||||||||||||    
T  12719685 ttttgtagtttttttttcttagggggccaaaatatcaactttgggaaagttagggggttaaaactgctattaagcc 12719760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 40 - 133
Target Start/End: Original strand, 34567756 - 34567849
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttaga 133  Q
    ||||||||| ||| |||||| ||||||||||||||| |  || | ||| |||||||||||||||| |||||||| |||| ||||||||||||||    
T  34567756 taacacgtggcacttcactttgggtgtcacgtcagcattgaccgagtcgaaattgacattgggggccaaaactgccacatatgcaaaacttaga 34567849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 16292442 - 16292335
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacat-tgggggtcaaaactgtcacagatgcaaaacttagagggcg 138  Q
    ||||||||| |||||||||||||| | |||||||| ||| || | ||||||||| |||| |||||| |||||||| ||||  ||||||||||||||||||    
T  16292442 taacacgtgacacctcacttagggggccacgtcagtgtagaccgagtcaaaatt-acatatgggggccaaaactgccacatgtgcaaaacttagagggcg 16292344  T
Q  139 gttttgtag 147  Q
     ||||||||    
T  16292343 attttgtag 16292335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 132
Target Start/End: Original strand, 21322855 - 21322943
Alignment:
Q  44 acgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttag 132  Q
    ||||| || |||| |||| ||||| ||| |||||| || | |||||||||| ||||||||||||||||||||||| |||||||||||||    
T  21322855 acgtggcatctcatttagagtgtcgcgttagcgtagaccgagtcaaaattggcattgggggtcaaaactgtcacatatgcaaaacttag 21322943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 209
Target Start/End: Complemental strand, 50769537 - 50769366
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| ||||||||| ||||||  |||||||||||  | | |||||||||||| || ||||  ||||||| || ||||||||||||||| ||||||    
T  50769537 taacacgtggcacctcactcagggtgctacgtcagcgtaggccgagtcaaaattgaccttaggggctaaaactgccatagatgcaaaacttag-gggcgg 50769439  T
Q  140 ttttgtag--nnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaa 209  Q
    ||||||||         ||||| | | ||||||||||||||||  ||||||| |||| |||||||||||||||    
T  50769438 ttttgtagtttttttttcttaggggggcaaaatcgcaactttgggaaagttagggggataaaactgctattaa 50769366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 21597542 - 21597649
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| ||||||| |||||||| |||||||||||| || | |||||||||    ||||||| |||||||| |||| |||||||| |||| || |||    
T  21597542 taacacgtggcacctcatttagggtgccacgtcagcgtagaccgagtcaaaattagttttgggggccaaaactgccacatatgcaaaatttaggggacgg 21597641  T
Q  140 ttttgtag 147  Q
    ||||||||    
T  21597642 ttttgtag 21597649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 2180874 - 2180780
Alignment:
Q  115 cacagatgcaaaacttagagggcggttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagttaggggttaaaactgctattaa 209  Q
    ||||||||||||| |||| || || ||||||||       ||||| | || |||||||||||||||||||||||| |||||||||||||||||||    
T  2180874 cacagatgcaaaatttaggggacgattttgtagtttttttcttagggagctaaaatcgcaactttgaaaaagttaagggttaaaactgctattaa 2180780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 209
Target Start/End: Original strand, 6637203 - 6637373
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||| ||| |||||||||||||||| || ||||| ||| || | |||||||||| ||||| ||| |||||||| || | ||||||||||||  |||||     
T  6637203 taacatgtggcacctcacttagggtgccatgtcagtgtagaccgagtcaaaattggcattgtgggccaaaactgccagaaatgcaaaacttaaggggcga 6637302  T
Q  140 ttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagtt-aggggttaaaactgctattaa 209  Q
    ||||||||       ||||| | || ||||||| |||||||||||| || | ||| ||||| |||||||||    
T  6637303 ttttgtagtttttttcttagggggctaaaatcgaaactttgaaaaaattaaagggctaaaagtgctattaa 6637373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 147
Target Start/End: Complemental strand, 11824351 - 11824256
Alignment:
Q  50 cacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag 147  Q
    |||||||||||||||| ||| |||||||| |||| |||||||||| | || |||  |||||||| |||| ||||||||||||| ||||||||||||||    
T  11824351 cacctcacttagggtgccacatcagcgtagactgagtcaaaattggcctt-gggaccaaaactgccacacatgcaaaacttag-gggcggttttgtag 11824256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 54983983 - 54984080
Alignment:
Q  50 cacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag 147  Q
    |||||||||||||||| |||||||||||| ||   | |||||||||||||||| | |||||||| ||||  ||||||| |||| ||||| ||||||||    
T  54983983 cacctcacttagggtgccacgtcagcgtagaccaagccaaaattgacattgggtgccaaaactgacacatgtgcaaaatttagggggcgattttgtag 54984080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 212
Target Start/End: Original strand, 14060888 - 14061017
Alignment:
Q  85 gtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtagnnnnnnn-cttagagtgccaaaatcgcaactttgaaa 183  Q
    |||||||||  | ||||||| |||||||| |||||||| ||||||||| || | |||||||||        ||||| | |||||||||||||||||||||    
T  14060888 gtcaaaattagccttgggggccaaaactgccacagatgtaaaacttaggggacagttttgtagttttttttcttagggagccaaaatcgcaactttgaaa 14060987  T
Q  184 aagttaggg-gttaaaactgctattaagcc 212  Q
    || |||||| |||||| |||||||||||||    
T  14060988 aaattagggagttaaagctgctattaagcc 14061017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 26089643 - 26089537
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| ||| |||||||||||| ||||||||||||  ||| |||||||||| | ||  ||  ||||||||||||||||| ||||||||  |||| |    
T  26089643 taacacgtggcacttcacttagggtgccacgtcagcgtagtctgagtcaaaattggcctt-tggaccaaaactgtcacagatgtaaaacttaaggggctg 26089545  T
Q  140 ttttgtag 147  Q
    ||||||||    
T  26089544 ttttgtag 26089537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 31553382 - 31553489
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||  |||||||||||||||| | ||| |||||| || | |||||||||| | ||||||| |||||||| || ||||| |||| |||| |||||     
T  31553382 taacacgtagcacctcacttagggtgccgcgttagcgtagaccgagtcaaaattggccttgggggccaaaactgccatagatgtaaaatttagggggcga 31553481  T
Q  140 ttttgtag 147  Q
    ||||||||    
T  31553482 ttttgtag 31553489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 6207359 - 6207421
Alignment:
Q  85 gtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag 147  Q
    |||||||||||| ||||||| ||||| || |||| ||||||||||||| ||||||||||||||    
T  6207359 gtcaaaattgaccttgggggccaaaattgccacaaatgcaaaacttagggggcggttttgtag 6207421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 210
Target Start/End: Complemental strand, 8070799 - 8070630
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||||||||| ||||| |||||||||||| ||   || ||||||||  | ||||| |||||||| ||||||| ||||| |||  |||| |    
T  8070799 taacacgtggcacctcacttggggtgccacgtcagcgtagaccaagttaaaattgatctagggggccaaaactgccacagatacaaaattta-tgggcag 8070701  T
Q  140 ttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaag 210  Q
    |||||||        ||||| | |||||| | ||||||||| |||||||| |||||||||||||||||||||    
T  8070700 ttttgtaatttttttcttag-gggccaaagttgcaactttggaaaagttagggggttaaaactgctattaag 8070630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 19909223 - 19909173
Alignment:
Q  163 gccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  19909223 gccaaaatcgcaactttgagaaagttagggggttaaaactgctattaagcc 19909173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 54855477 - 54855304
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||| ||| |||||||||||||||| |||||||||||| || | |||||||||| | ||||||  |||||||  || ||||||||||||||  |||| |    
T  54855477 taacaagtggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggctttggggaccaaaactacca-agatgcaaaacttaaggggcag 54855379  T
Q  140 ttttgtag-nnnnnnnctta-gagtgccaaaatcgcaactttgaaaaagttagg-ggttaaaactgctattaagcc 212  Q
    |||||| |        |||| ||| | |||||||||| |||||| ||||||||| |||||||||||||||||||||    
T  54855378 ttttgtcgttttttttcttatgag-gtcaaaatcgcagctttgagaaagttaggtggttaaaactgctattaagcc 54855304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 211
Target Start/End: Original strand, 21957668 - 21957780
Alignment:
Q  101 ggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtagnnnnnnn--cttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaa 197  Q
    |||||||||||||  |||| ||||||||||||  |||||||||||||         ||||||| |||||||||||||||||| |||||||| |||| |||    
T  21957668 ggggtcaaaactgctacagttgcaaaacttaggaggcggttttgtagtttttttttcttagag-gccaaaatcgcaactttggaaaagttagggggctaa 21957766  T
Q  198 aactgctattaagc 211  Q
    ||||||||||||||    
T  21957767 aactgctattaagc 21957780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 212
Target Start/End: Original strand, 2181313 - 2181438
Alignment:
Q  88 aaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagt 187  Q
    ||||||| | ||||||| ||||||||| |||| ||||||||||||||||| |||||||||       ||||  | ||||||||||||||||   ||||||    
T  2181313 aaaattgtccttgggggccaaaactgttacagttgcaaaacttagagggcagttttgtagttcttttcttaaggagccaaaatcgcaacttcataaaagt 2181412  T
Q  188 taggg-gttaaaactgctattaagcc 212  Q
    ||||| |  |||| ||||||||||||    
T  2181413 tagggagcaaaaagtgctattaagcc 2181438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 14060804 - 14060760
Alignment:
Q  165 caaaatcgcaactttgaaaaagtta-ggggttaaaactgctatta 208  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  14060804 caaaatcgcaactttgaaaaagttagggggttaaaactgctatta 14060760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 212
Target Start/End: Complemental strand, 21451627 - 21451459
Alignment:
Q  44 acgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggtttt 143  Q
    ||||| ||||||||||||||||||||||||| ||| || | |||||||||  | ||| ||  |||||||| ||||  ||||||| ||||  | || ||||    
T  21451627 acgtggcacctcacttagggtgtcacgtcagtgtagaccgagtcaaaattcgccttgtggc-caaaactgccacaagtgcaaaatttaggagacgttttt 21451529  T
Q  144 gtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagttagg-ggttaaaactgctattaagcc 212  Q
    ||||       || || | || |||||||||||||||| ||||||||| || ||||||||||||||||||    
T  21451528 gtagtttttatctcagggagcaaaaatcgcaactttgagaaagttaggaggctaaaactgctattaagcc 21451459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 42526103 - 42526155
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaat 92  Q
    ||||||||| ||||||||||||||||||||||||| ||| |||| ||||||||    
T  42526103 taacacgtggcacctcacttagggtgtcacgtcagtgtagactgagtcaaaat 42526155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 4796094 - 4796036
Alignment:
Q  155 cttagagtgccaaaatcgcaactttgaaaaagttagggg-ttaaaactgctattaagcc 212  Q
    ||||||| ||||||||||||| |||||||||||||||||  ||||| ||||||||||||    
T  4796094 cttagagggccaaaatcgcaattttgaaaaagttaggggactaaaaatgctattaagcc 4796036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 210
Target Start/End: Complemental strand, 1420627 - 1420537
Alignment:
Q  121 tgcaaaacttagagggcggttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaag 210  Q
    |||||||||||| ||||||||||||||        ||||   |||||||||||||||||| |||||||| |||| ||||||||||||||||    
T  1420627 tgcaaaacttagggggcggttttgtagttttttttttaggaggccaaaatcgcaactttggaaaagttagggggctaaaactgctattaag 1420537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 3658081 - 3658021
Alignment:
Q  85 gtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgt 145  Q
    ||||||||||||||| |||  |||||||||||||||||||||| ||||  || ||||||||    
T  3658081 gtcaaaattgacatttgggaccaaaactgtcacagatgcaaaatttaggaggtggttttgt 3658021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 5344442 - 5344407
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcgt 77  Q
    ||||||| ||||||||||||||||||||||||||||    
T  5344442 acacgtggcacctcacttagggtgtcacgtcagcgt 5344407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 118
Target Start/End: Original strand, 6614984 - 6615060
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcaca 118  Q
    ||||| ||| ||||||||||||||||||| ||||||||| || | ||||||||||  ||  ||||||||||||| ||||    
T  6614984 taacatgtggcacctcacttagggtgtcatgtcagcgtagaccgagtcaaaattggtat--ggggtcaaaactgccaca 6615060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 147
Target Start/End: Complemental strand, 8965646 - 8965587
Alignment:
Q  88 aaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag 147  Q
    ||||||||| ||||||  |||||||| ||||| |||||||||||  ||||||||||||||    
T  8965646 aaaattgaccttggggaccaaaactggcacagttgcaaaacttaaggggcggttttgtag 8965587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 29350940 - 29350885
Alignment:
Q  155 cttagagtgccaaaatcgcaactttgaaaaagtt-aggggttaaaactgctattaa 209  Q
    |||||||  ||||||||||||||||||| ||||| |||||||||||||| ||||||    
T  29350940 cttagaggaccaaaatcgcaactttgaataagttaaggggttaaaactgttattaa 29350885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 37289627 - 37289523
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaa-aattgacattgggggt-caaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||| |||||||||||||||| |||||||||||  |||| ||||| ||| |||  ||||||| ||||||||||| |||  |||||| ||| |||| |    
T  37289627 acacgtggcacctcacttagggtgccacgtcagcgttgactgagtcaacaatggac--tgggggtccaaaactgtcaaagaatcaaaacatagggggctg 37289530  T
Q  140 ttttgta 146  Q
    |||||||    
T  37289529 ttttgta 37289523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 44921786 - 44921751
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcgt 77  Q
    ||||||| ||||||||||||||||||||||||||||    
T  44921786 acacgtggcacctcacttagggtgtcacgtcagcgt 44921751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 210
Target Start/End: Original strand, 49185823 - 49185870
Alignment:
Q  163 gccaaaatcgcaactttgaaaaagttaggggttaaaactgctattaag 210  Q
    ||||||||||||||||||  |||||| ||||| |||||||||||||||    
T  49185823 gccaaaatcgcaactttgtgaaagttgggggtgaaaactgctattaag 49185870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 51537757 - 51537792
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcgt 77  Q
    ||||||| ||||||||||||||||||||||||||||    
T  51537757 acacgtggcacctcacttagggtgtcacgtcagcgt 51537792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 51696708 - 51696673
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcgt 77  Q
    ||||||| ||||||||||||||||||||||||||||    
T  51696708 acacgtgacacctcacttagggtgtcacgtcagcgt 51696673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #58
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 54607059 - 54607024
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcgt 77  Q
    ||||||| ||||||||||||||||||||||||||||    
T  54607059 acacgtggcacctcacttagggtgtcacgtcagcgt 54607024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #59
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 35615433 - 35615479
Alignment:
Q  164 ccaaaatcgcaactttgaaaaagttaggggttaaaactgctattaag 210  Q
    ||||||||||||||| |  |||||||||||| |||||||||||||||    
T  35615433 ccaaaatcgcaacttcgtgaaagttaggggtgaaaactgctattaag 35615479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #60
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 49185743 - 49185665
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcaca 118  Q
    ||||| ||| |||||| ||||||||| |||||||||||| ||   |||||||||| | ||||||| |||||||| ||||    
T  49185743 taacatgtggcacctcgcttagggtgccacgtcagcgtagaccaagtcaaaattggccttgggggccaaaactgccaca 49185665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #61
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 130
Target Start/End: Original strand, 20118052 - 20118133
Alignment:
Q  49 tcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaactt 130  Q
    ||||||||||||||||| |||||| ||||| |  |  |||||||||   ||||||| |||||||| |||| |||||||||||    
T  20118052 tcacctcacttagggtgccacgtccgcgtagatcgaatcaaaattggtcttgggggccaaaactggcacatatgcaaaactt 20118133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #62
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 20737500 - 20737545
Alignment:
Q  165 caaaatcgcaactttgaaaaagttagg-ggttaaaactgctattaa 209  Q
    ||||||||||||||||| |||||||||  |||||||||||||||||    
T  20737500 caaaatcgcaactttgagaaagttaggatgttaaaactgctattaa 20737545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #63
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 146
Target Start/End: Complemental strand, 26675217 - 26675121
Alignment:
Q  50 cacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggt-caaaactgtcacagatgcaaaacttagagggcggttttgta 146  Q
    |||||||||||||||| |||||||||||  |||| ||||| | ||  ||||||||| ||||||||||| |||  |||||| ||| |||| ||||||||    
T  26675217 cacctcacttagggtgccacgtcagcgttgactgagtcaacaatg-gattgggggtccaaaactgtcaaagaatcaaaacatagggggctgttttgta 26675121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #64
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 35615364 - 35615315
Alignment:
Q  163 gccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagc 211  Q
    |||||||||||||||||  |||||||| |||| |||||||||||||||||    
T  35615364 gccaaaatcgcaactttagaaaagttagggggctaaaactgctattaagc 35615315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #65
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 147
Target Start/End: Complemental strand, 51233651 - 51233547
Alignment:
Q  43 cacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgt-cacagatgcaaaacttagagggcggtt 141  Q
    |||||| |||||||||||||||| |||||||||||| ||   ||| |||||| | ||||||| ||||||||| |||   ||||||||||||  ||||||     
T  51233651 cacgtggcacctcacttagggtgccacgtcagcgtagaccaagtccaaattggc-ttgggggccaaaactgtccacgagtgcaaaacttaggaggcggta 51233553  T
Q  142 ttgtag 147  Q
    ||||||    
T  51233552 ttgtag 51233547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #66
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 1571447 - 1571399
Alignment:
Q  165 caaaatcgcaactttgaaaaagttaggg-gttaaaactgctattaagcc 212  Q
    |||||||||||||||   |||||||||| ||||||||||||||||||||    
T  1571447 caaaatcgcaacttttgtaaagttagggtgttaaaactgctattaagcc 1571399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #67
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 147
Target Start/End: Complemental strand, 10059810 - 10059750
Alignment:
Q  88 aaaattgacattgggggtc-aaaactgtcacagatgcaaaacttagagggcggttttgtag 147  Q
    ||||||||| ||||||| | |||||||  |||| |||||||||||| ||||||||||||||    
T  10059810 aaaattgaccttgggggaccaaaactgctacagttgcaaaacttagggggcggttttgtag 10059750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #68
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 21957587 - 21957539
Alignment:
Q  165 caaaatcgcaactttgaaaaagttaggg-gttaaaactgctattaagcc 212  Q
    ||||||||||||||||| |||||||||| | |||||||| |||||||||    
T  21957587 caaaatcgcaactttgagaaagttagggagctaaaactgatattaagcc 21957539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #69
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 35392723 - 35392683
Alignment:
Q  106 caaaactgtcacagatgcaaaacttagagggcggttttgta 146  Q
    |||||||||||||| |||||||||||| |||| ||||||||    
T  35392723 caaaactgtcacaggtgcaaaacttagggggcagttttgta 35392683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #70
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 209
Target Start/End: Original strand, 42526214 - 42526258
Alignment:
Q  166 aaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaa 209  Q
    |||||||||||||| | ||||||| ||||||||||||||||||||    
T  42526214 aaaatcgcaactttaagaaagttagggggttaaaactgctattaa 42526258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 48)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 41 - 212
Target Start/End: Original strand, 14943686 - 14943857
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggt 140  Q
    |||||||| |||||||||||||||| ||| |||||||| || | |||||||||  | ||||||| ||||| || ||||| ||||||||||||||||||||    
T  14943686 aacacgtggcacctcacttagggtgccacatcagcgtagaccgagtcaaaattagccttgggggccaaaaatgccacaggtgcaaaacttagagggcggt 14943785  T
Q  141 tttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagtt-aggggttaaaactgctattaagcc 212  Q
    |||||||       |||||||  |||||||| |||||||| ||||||| ||||| ||||||||||||||||||    
T  14943786 tttgtagtttttttcttagag-accaaaatcacaactttggaaaagttaaggggctaaaactgctattaagcc 14943857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 41 - 209
Target Start/End: Original strand, 2609230 - 2609399
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggt 140  Q
    |||||||| || ||||||||||||| ||| |||||||| || | |||||||||||  |||||||||||||||| |||| ||| ||||||||  ||||| |    
T  2609230 aacacgtggcaactcacttagggtgccacatcagcgtagaccgagtcaaaattgatcttgggggtcaaaactgccacatatgtaaaacttatggggcgat 2609329  T
Q  141 tttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaa 209  Q
    |||||||       ||||| |  ||||||||||||||||||||||||||  | |||||||||||||||||    
T  2609330 tttgtagtttttttcttaggggaccaaaatcgcaactttgaaaaagttattgagttaaaactgctattaa 2609399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 37803296 - 37803190
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| ||||| |||||||||| |||||||||||| || | ||||||||||||||| ||||||||||||| |||| |||||||||||||  |||||    
T  37803296 taacacgtgacaccttacttagggtgccacgtcagcgtagaccgagtcaaaattgacatt-ggggtcaaaactgccacaaatgcaaaacttaggaggcgg 37803198  T
Q  140 ttttgtag 147  Q
    ||||||||    
T  37803197 ttttgtag 37803190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 34679271 - 34679097
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaactta-gagggcg 138  Q
    ||||||||| |||||||||||||||| |||||||||||| || |||||||||||    |||| || |||||||| ||||  ||||||||||| | |||||    
T  34679271 taacacgtggcacctcacttagggtgccacgtcagcgtagaccgggtcaaaatttgtcttggaggccaaaactgccacatgtgcaaaacttaggggggcg 34679172  T
Q  139 gttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    ||||||||        |||||   |||||||||||||||||| |||||||| |||| ||||||||||||||||||    
T  34679171 gttttgtaatttttttcttaggtggccaaaatcgcaactttggaaaagttagggggctaaaactgctattaagcc 34679097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 39918608 - 39918434
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||||||||||||||| |||||||||| | || | |||||||||| | ||||||| |||||| | |||| ||||||||||||| |||||     
T  39918608 taacacgtggcacctcacttagggtgccacgtcagcgaagaccgagtcaaaattggccttgggggccaaaacagccacatatgcaaaacttagcgggcga 39918509  T
Q  140 ttttgtag-nnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    ||||| ||        ||||| | ||||||||||||||||||| ||||||| |||| ||||||| ||||||||||    
T  39918508 ttttgcagttttttttcttagggggccaaaatcgcaactttgagaaagttagggggctaaaactactattaagcc 39918434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 41 - 212
Target Start/End: Original strand, 5470478 - 5470649
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggt 140  Q
    |||||||| |||||||||||||||| ||||||||| || || | |||||||||| | ||||||| |||||||| |||||||| ||||||||  |||||||    
T  5470478 aacacgtggcacctcacttagggtgccacgtcagcatagaccgagtcaaaattggccttgggggccaaaactgccacagatgtaaaacttaaggggcggt 5470577  T
Q  141 tttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    |||||||        |||| | |||||||||||||||||   ||||||| |||| |||||||||||| |||||    
T  5470578 tttgtagttttttt-ttagggggccaaaatcgcaactttaggaaagttagggggctaaaactgctataaagcc 5470649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 37431717 - 37431610
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||| ||| |||||||||||||||| |||||||||||| || | |||||||||| | ||||||| |||||||| |||| ||||||||||||| |||||     
T  37431717 taacatgtggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggccttgggggccaaaactgccacaaatgcaaaacttagtgggcga 37431618  T
Q  140 ttttgtag 147  Q
    ||||||||    
T  37431617 ttttgtag 37431610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 43028967 - 43028794
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    |||||| || |||||||||||||||| |||||||||||| || | |||||||||| |  | | || |||||||| |||||||||||||||||| ||| ||    
T  43028967 taacacttggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggccctagaggccaaaactgccacagatgcaaaacttag-gggggg 43028869  T
Q  140 ttttgtag-nnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    ||||||||        ||||| | |||||||||||||||||| | |||||| |||| ||||||||||||||||||    
T  43028868 ttttgtagttttttttcttagggggccaaaatcgcaactttggagaagttagggggctaaaactgctattaagcc 43028794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 14489387 - 14489214
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||||||| ||||||| ||| |||||||| || | ||||||||||   |||| ||||||||||| ||||| |||||||||||| ||||||    
T  14489387 taacacgtggcacctcacgtagggtgccacatcagcgtagaccgagtcaaaattggtcttggaggtcaaaactgccacaggtgcaaaacttagggggcgg 14489288  T
Q  140 ttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagttag-gggttaaaactgctattaagcc 212  Q
    |||||||        ||||  | ||||||||| |||||||   |||||||| ||| ||||||||||||||||||    
T  14489287 ttttgtaatttttttcttaaggggccaaaatcacaacttttggaaagttagagggctaaaactgctattaagcc 14489214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 40 - 132
Target Start/End: Complemental strand, 27489606 - 27489514
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttag 132  Q
    ||||||||||||||||||||||| || ||||||||||||||| | |||||||||| | |||| || |||||||| ||||||||||||| ||||    
T  27489606 taacacgtgtcacctcacttaggatgccacgtcagcgtaaaccgagtcaaaattgcccttggaggccaaaactgccacagatgcaaaagttag 27489514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 146
Target Start/End: Original strand, 44617879 - 44617985
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||| ||| ||||||| |||||||| |||||||||||| || | ||||||||||   ||||||| |||||||| |||| ||||||||||||| ||||||    
T  44617879 taacaggtgacacctcatttagggtgccacgtcagcgtagaccgagtcaaaattggtcttgggggccaaaactgccacaaatgcaaaacttagggggcgg 44617978  T
Q  140 ttttgta 146  Q
    |||||||    
T  44617979 ttttgta 44617985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 212
Target Start/End: Complemental strand, 31827699 - 31827525
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacatt-gggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    |||| ||| |||||||||||||||| |||||||||||| || |  ||||||||||  || ||||| |||||||| |||||||||||| ||||| ||| |     
T  31827699 aacatgtggcacctcacttagggtgccacgtcagcgtagaccgaatcaaaattgattttggggggccaaaactggcacagatgcaaagcttagggggtga 31827600  T
Q  140 ttttgtag-nnnnnnncttagagtgccaaaatcgcaactttgaaaaagttaggg-gttaaaactgctattaagcc 212  Q
    ||||||||        ||||| | | ||||||| |||||||| ||||||||||| ||||||||||||||||||||    
T  31827599 ttttgtagtcttttttcttaggggggcaaaatcacaactttggaaaagttagggagttaaaactgctattaagcc 31827525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 24472587 - 24472679
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttag 132  Q
    ||||||||| |||||||||||||||| ||||| || ||| || | |||||||||| |||||| || |||||||| ||||||||||||||||||    
T  24472587 taacacgtggcacctcacttagggtgccacgttagtgtagacggagtcaaaattggcattggcggccaaaactgccacagatgcaaaacttag 24472679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 25411701 - 25411609
Alignment:
Q  54 tcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgta 146  Q
    ||||||| |||| ||||||||| || || | ||||||||||  ||||||||| ||||||| |||||||||||||||||| |||||||||||||    
T  25411701 tcacttatggtgccacgtcagcatagaccgagtcaaaattggtattgggggtgaaaactgccacagatgcaaaacttagggggcggttttgta 25411609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 5008441 - 5008531
Alignment:
Q  53 ctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggtttt 143  Q
    ||||||||||||| |||||||||||| || | |||||||||||| ||| ||| ||||| || |||| |||||||||||||||| |||||||    
T  5008441 ctcacttagggtgccacgtcagcgtagaccgagtcaaaattgaccttgagggccaaaattgccacaaatgcaaaacttagaggacggtttt 5008531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 212
Target Start/End: Complemental strand, 6592899 - 6592724
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggt 140  Q
    |||||||| ||||||||||||||||  | ||||||||| |||| |||||||||  ||||| ||| |||||||| |||| ||||||||||||| |||| ||    
T  6592899 aacacgtggcacctcacttagggtgcaatgtcagcgtagactgagtcaaaattagcattgagggccaaaactgccacatatgcaaaacttag-gggcagt 6592801  T
Q  141 tttgt----agnnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    |||||    |        ||||| | | |||||||||||||||| |||||||| |||| ||||||||||||||||||    
T  6592800 tttgtaaaaaaaaatcttcttagggggtcaaaatcgcaactttggaaaagttagggggctaaaactgctattaagcc 6592724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 42 - 212
Target Start/End: Complemental strand, 25333670 - 25333499
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggtt 141  Q
    ||||||| ||||| |||||||||| |||||||||||| ||   |||||||||| | |||| |  |||||||| ||||| |||||||||||| ||| ||||    
T  25333670 acacgtggcaccttacttagggtgccacgtcagcgtagaccaagtcaaaattggccttggagaccaaaactgccacaggtgcaaaacttagggggtggtt 25333571  T
Q  142 ttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagtt-aggggttaaaactgctattaagcc 212  Q
    || |||       ||||  |  ||||||||||||||||| ||||||| ||||||||||| || |||||||||    
T  25333570 ttatagtttttttcttaagggaccaaaatcgcaactttggaaaagttaaggggttaaaattgttattaagcc 25333499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 147
Target Start/End: Complemental strand, 34761020 - 34760914
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggt 140  Q
    |||| ||| |||||||||||||||| ||||||||| || ||   ||||||||||   ||||||| |||||||| |||| ||||||||||||| |||||||    
T  34761020 aacatgtgacacctcacttagggtgccacgtcagcatagaccacgtcaaaattggtcttgggggccaaaactgccacatatgcaaaacttagggggcggt 34760921  T
Q  141 tttgtag 147  Q
    |||||||    
T  34760920 tttgtag 34760914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 212
Target Start/End: Original strand, 4576683 - 4576854
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||||||||||||||| |||| ||||||| || | |||||||||| || |||||| ||||||||||||  | ||||||||||  || |      
T  4576683 taacacgtggcacctcacttagggtgccacgccagcgtagaccgagtcaaaattggcagtgggggccaaaactgtcacgaacgcaaaacttaagggacaa 4576782  T
Q  140 ttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagttaggggt-taaaactgctattaagcc 212  Q
    ||||||||        |||  | ||||||||||||||||||  |||||||||||| ||||||||||||||||||    
T  4576783 ttttgtagtttttta-ttaaggggccaaaatcgcaactttg-gaaagttaggggtctaaaactgctattaagcc 4576854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 4925613 - 4925506
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| ||||| |||||||||| |||||||||||| || |   ||||||||   || ||||||||||||| |||| ||||||||||||| || |||    
T  4925613 taacacgtggcaccttacttagggtgccacgtcagcgtagacagaaccaaaattggtcttaggggtcaaaactgccacatatgcaaaacttaggggacgg 4925514  T
Q  140 ttttgtag 147  Q
    ||||||||    
T  4925513 ttttgtag 4925506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 8553684 - 8553774
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaactta 131  Q
    ||||||||| |||||||||||||||||||||||||| || || | ||| |||||||| ||||| | |||||||| |||| ||||||||||||    
T  8553684 taacacgtggcacctcacttagggtgtcacgtcagcatagaccgagtc-aaattgactttgggagacaaaactgccacaaatgcaaaactta 8553774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 40 - 146
Target Start/End: Complemental strand, 8857220 - 8857114
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| ||||||| ||| |||| ||| |||||||  ||   |||||||||| ||||||||| |||||||| |||| |||||||||||||  |||||    
T  8857220 taacacgtggcacctcatttaaggtgccacatcagcgttgaccaagtcaaaattggcattgggggccaaaactgccacaaatgcaaaacttaggaggcgg 8857121  T
Q  140 ttttgta 146  Q
    |||||||    
T  8857120 ttttgta 8857114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 212
Target Start/End: Original strand, 41196370 - 41196539
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||| ||| |||||||||||||||| |||||||||||| ||   ||| ||||||||||||||||  ||||||  |||| ||||||||||||  || | |    
T  41196370 taacatgtggcacctcacttagggtgccacgtcagcgtagaccaagtctaaattgacattgggggcaaaaacttccacatatgcaaaacttaagggacag 41196469  T
Q  140 ttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagttaggggttaaaactgctattaagcc 212  Q
    |||||||        ||  ||    ||||||| ||||||||||||||||| |||||||||||||||| |||||    
T  41196470 ttttgtaatttttttctggga---tcaaaatcacaactttgaaaaagttaagggttaaaactgctataaagcc 41196539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 32969716 - 32969624
Alignment:
Q  55 cacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag 147  Q
    ||||||||| |||||||||||||| || | |||||||||| | ||||| | |||||||| |||| ||| ||||||||| ||||| ||||||||    
T  32969716 cacttagggcgtcacgtcagcgtagaccgagtcaaaattggccttgggagccaaaactgccacaaatgaaaaacttagggggcgattttgtag 32969624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 18969234 - 18969341
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| ||||||| |||| ||||||||||||||||  |   |||||||||| | |||||||||||||| | |||| || ||||| ||||||| ||     
T  18969234 taacacgtgacacctcatttagagtgtcacgtcagcgtaggcctagtcaaaattggccttgggggtcaaaacagccacaaatacaaaatttagaggacga 18969333  T
Q  140 ttttgtag 147  Q
    ||||||||    
T  18969334 ttttgtag 18969341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 24306159 - 24306250
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaactta 131  Q
    ||||| ||| |||||||||||||||||||| |||||||| |    |||||||||||| ||||||| || ||||||||||  |||||||||||    
T  24306159 taacatgtgacacctcacttagggtgtcacatcagcgtagatcaagtcaaaattgaccttgggggccagaactgtcacatgtgcaaaactta 24306250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 25501 - 25452
Alignment:
Q  98 ttgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag 147  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||||||||    
T  25501 ttgggggtcaaaactgccacaggtgcaaaacttagggggcggttttgtag 25452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 35718805 - 35718712
Alignment:
Q  54 tcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag 147  Q
    |||||||||||| ||| ||| |||| |||| |||||||||| | |||| || |||||||| |||||||||||||  ||| || |||||||||||    
T  35718805 tcacttagggtgccacatcaccgtagactgagtcaaaattggccttggaggccaaaactgccacagatgcaaaatgtaggggacggttttgtag 35718712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 5362315 - 5362407
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgac-attgggggtcaaaactgtcacagatgcaaaactta 131  Q
    ||||| ||| ||||||||||||| ||||||||||||||| |||| |||||||||| |  |||| || |||||||| ||||| || ||||||||    
T  5362315 taacatgtggcacctcacttaggatgtcacgtcagcgtagactgagtcaaaattggcttttggaggccaaaactgccacagttgtaaaactta 5362407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 19895754 - 19895845
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaactta 131  Q
    |||||| || ||||||||||||||||  |||||||| ||||| |  ||||||||| |||||||||  ||||||| |||| ||| ||||||||    
T  19895754 taacacatggcacctcacttagggtgctacgtcagcataaaccgaatcaaaattggcattgggggctaaaactgccacatatgtaaaactta 19895845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 16043207 - 16043269
Alignment:
Q  85 gtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag 147  Q
    |||||||||| | ||||||| |||||||| |||||||||||||| ||| |||||||| |||||    
T  16043207 gtcaaaattggccttgggggccaaaactgccacagatgcaaaacatagggggcggttctgtag 16043269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 24498152 - 24498106
Alignment:
Q  166 aaaatcgcaactttgaaaaagttaggggttaaaactgctattaagcc 212  Q
    |||||| ||||||||||||| ||||||| ||||||||||||||||||    
T  24498152 aaaatcacaactttgaaaaaattaggggctaaaactgctattaagcc 24498106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 100 - 178
Target Start/End: Original strand, 6510200 - 6510278
Alignment:
Q  100 gggggtcaaaactgtcacagatgcaaaacttagagggcggttttgtagnnnnnnncttagagtgccaaaatcgcaactt 178  Q
    ||||| ||||||||  |||| |||||||||||| ||||||||||||||       ||||| ||||||||||||||||||    
T  6510200 gggggccaaaactgctacagttgcaaaacttagggggcggttttgtagcttttttcttagggtgccaaaatcgcaactt 6510278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 16238407 - 16238468
Alignment:
Q  85 gtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggttttgta 146  Q
    |||||||||||||||||||| ||||||||||| |||| ||| || ||| |||| ||||||||    
T  16238407 gtcaaaattgacattgggggccaaaactgtcaaagatccaatacatagggggctgttttgta 16238468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 19399440 - 19399489
Alignment:
Q  164 ccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    |||||||| ||||||||||||||||| |||| ||||||||||||||||||    
T  19399440 ccaaaatcacaactttgaaaaagttagggggctaaaactgctattaagcc 19399489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 21361930 - 21361881
Alignment:
Q  163 gccaaaatcgcaactttgaaaaagttaggggttaaaactgctattaagcc 212  Q
    ||||||||||||||||||| |||||||||||  |||| ||||||||||||    
T  21361930 gccaaaatcgcaactttgataaagttaggggcaaaaattgctattaagcc 21361881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 25092459 - 25092382
Alignment:
Q  50 cacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaa 127  Q
    ||||||||||||| || ||||||||| |  || | |||||||||||| || |||| |||||| |||||||||||||||    
T  25092459 cacctcacttaggatgccacgtcagcattgaccgagtcaaaattgactttcggggacaaaacggtcacagatgcaaaa 25092382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 36715559 - 36715608
Alignment:
Q  164 ccaaaatcgcaactttgaaaaagttaggg-gttaaaactgctattaagcc 212  Q
    |||||||||||||||| |||||||||||| | ||||||||||||||||||    
T  36715559 ccaaaatcgcaactttaaaaaagttagggagctaaaactgctattaagcc 36715608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 131
Target Start/End: Original strand, 18709399 - 18709486
Alignment:
Q  44 acgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaactta 131  Q
    ||||| ||||||||||| |||||||||||||| || || | || |||||||||||||||   ||||| ||  |||| |||||||||||    
T  18709399 acgtggcacctcacttaaggtgtcacgtcagcatagaccgagttaaaattgacattgggaaccaaaattgctacagttgcaaaactta 18709486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 40711478 - 40711513
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcgt 77  Q
    ||||||| ||||||||||||||||||||||||||||    
T  40711478 acacgtggcacctcacttagggtgtcacgtcagcgt 40711513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 16043139 - 16043089
Alignment:
Q  163 gccaaaatcgcaactttg-aaaaagttaggggttaaaactgctattaagcc 212  Q
    ||||||| |||||||||| ||||||||||||| |||||||| |||||||||    
T  16043139 gccaaaaccgcaactttggaaaaagttaggggataaaactgttattaagcc 16043089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 25375137 - 25375187
Alignment:
Q  163 gccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    |||||||||||||| |||||||| ||| |||| ||||||||||||||||||    
T  25375137 gccaaaatcgcaacattgaaaaaattagggggctaaaactgctattaagcc 25375187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 2936928 - 2936965
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgt 77  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  2936928 taacacgtggcacctcacttagggtgccacgtcagcgt 2936965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 19399317 - 19399370
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaatt 93  Q
    |||||||||  ||||||||||||||| |||||||||||| || | |||||||||    
T  19399317 taacacgtggaacctcacttagggtgccacgtcagcgtagaccgagtcaaaatt 19399370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 212
Target Start/End: Complemental strand, 24306122 - 24306016
Alignment:
Q  106 caaaactgtcacagatgcaaaacttagagggcggttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagttaggggttaaaactgcta 205  Q
    ||||||||| |||| ||||||||||||| | |||||||||||       |||||||  | ||||||||||||| | ||||||||||    ||||||| ||    
T  24306122 caaaactgttacagttgcaaaacttagaagacggttttgtagtttttttcttagaggactaaaatcgcaacttcgtaaaagttaggaaaaaaaactgtta 24306023  T
Q  206 ttaagcc 212  Q
    |||||||    
T  24306022 ttaagcc 24306016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 36195720 - 36195773
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattg 94  Q
    ||||| || |||||||||||||||| |||||||||||| || | ||||||||||    
T  36195720 aacacatggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattg 36195773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 19399231 - 19399183
Alignment:
Q  164 ccaaaatcgcaactttgaaaaagttagg-ggttaaaactgctattaagc 211  Q
    |||||||||||||||||| ||||||||| || ||||| |||||||||||    
T  19399231 ccaaaatcgcaactttgagaaagttaggaggctaaaattgctattaagc 19399183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 42445544 - 42445508
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcgta 78  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  42445544 acacgtggcacctcacttagggtgccacgtcagcgta 42445508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 77035 - 76929
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||||||||||||||| |||||||||||| || | |||||||||| | ||||||| |||||||| |||| ||||||||||||| ||||||    
T  77035 taacacgtgacacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggccttggggg-caaaactgccacaaatgcaaaacttagggggcgg 76937  T
Q  140 ttttgtag 147  Q
     |||||||    
T  76936 ctttgtag 76929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 77125 - 77175
Alignment:
Q  163 gccaaaatcgcaactttgaaaaagttagg-ggttaaaactgctattaagcc 212  Q
    ||||||| ||||||||| ||||||||||| |||||||||| ||||||||||    
T  77125 gccaaaaccgcaactttaaaaaagttaggcggttaaaactactattaagcc 77175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 44 - 211
Target Start/End: Complemental strand, 20083 - 19915
Alignment:
Q  44 acgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggtttt 143  Q
    ||||| |||||||||||||||| ||||| |||||| |  | |||||||||| | ||||||| |||||||| |||||||||||||||||| || || ||||    
T  20083 acgtgacacctcacttagggtgccacgttagcgtagatcgagtcaaaattggctttgggggccaaaactgccacagatgcaaaacttagtggacgatttt 19984  T
Q  144 gtag-nnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagc 211  Q
    ||||        ||||| | ||||||||| ||||||| ||||| ||| ||||||||||||||||||||||    
T  19983 gtagttttttttcttag-gggccaaaatcacaactttaaaaaatttagggggttaaaactgctattaagc 19915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 209
Target Start/End: Complemental strand, 9585 - 9415
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| ||||||| ||| | |||||||||||| || || | |||||||||| | |||||||  ||||||| |||| ||||||||||||| || |||    
T  9585 taacacgtggcacctcatttaagatgtcacgtcagcctagaccgagtcaaaattggccttgggggctaaaactgccacatatgcaaaacttaggggacgg 9486  T
Q  140 ttttgtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaa 209  Q
    ||||||||       ||||||| || |||||| ||||||||  ||| ||| |||| |||||||||||||||    
T  9485 ttttgtagtttttttcttagagggcaaaaatcacaactttgggaaaattagggggctaaaactgctattaa 9415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 44 - 209
Target Start/End: Original strand, 2905 - 3068
Alignment:
Q  44 acgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggtttt 143  Q
    ||||| || |||| ||||||||||||||||  ||| |||| |||||||||| | ||||||  ||||||||||||| |||||||||||| ||||| |||||    
T  2905 acgtggcatctcatttagggtgtcacgtcaaagtagactgagtcaaaattggctttggggc-caaaactgtcacatatgcaaaacttaaagggcagtttt 3003  T
Q  144 gtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagttaggg-gttaaaactgctattaa 209  Q
     |||       ||||| ||  ||||||||||||||||| ||||||||||   |||||||||||||||    
T  3004 ttagtttttttcttagggt--caaaatcgcaactttgagaaagttagggaactaaaactgctattaa 3068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 143
Target Start/End: Complemental strand, 3236 - 3146
Alignment:
Q  53 ctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggtttt 143  Q
    ||||||||||||| |||||||||||| || | |||||||||||| ||| ||| ||||| || |||| |||||||||||||||| |||||||    
T  3236 ctcacttagggtgccacgtcagcgtagaccgagtcaaaattgaccttgagggccaaaattgccacaaatgcaaaacttagaggacggtttt 3146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 40 - 193
Target Start/End: Complemental strand, 145527 - 145373
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| |||||||||||||||  || |||||| || || | |||||||||| | ||||||| |||||||| ||||||||||||| |||  ||||||    
T  145527 taacacgtggcacctcacttagggttccatgtcagcctagaccgagtcaaaattggccttgggggccaaaactgccacagatgcaaaatttaaggggcgg 145428  T
Q  140 ttttgtag-nnnnnnncttagagtgccaaaatcgcaactttgaaaaagttagggg 193  Q
     |||||||        ||||| | | ||||||||||||||||| |||||||||||    
T  145427 ctttgtagttttttttcttaggggggcaaaatcgcaactttgagaaagttagggg 145373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 9511 - 9439
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaact 112  Q
    ||||||||| ||||||||||||| || |||||||||||| || | |||||||||||  ||||||| |||||||    
T  9511 taacacgtgacacctcacttaggatgccacgtcagcgtagaccgagtcaaaattgatcttgggggccaaaact 9439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0372 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0372
Description:

Target: scaffold0372; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 212
Target Start/End: Complemental strand, 292 - 124
Alignment:
Q  44 acgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggtttt 143  Q
    ||||| ||||||||||||||||||||||||| ||| || | |||||||||  | ||| ||  |||||||| ||||  ||||||| ||||  | || ||||    
T  292 acgtggcacctcacttagggtgtcacgtcagtgtagaccgagtcaaaattcgccttgtggc-caaaactgccacaagtgcaaaatttaggagacgttttt 194  T
Q  144 gtagnnnnnnncttagagtgccaaaatcgcaactttgaaaaagttagg-ggttaaaactgctattaagcc 212  Q
    ||||       || || | || |||||||||||||||| ||||||||| || ||||||||||||||||||    
T  193 gtagtttttatctcagggagcaaaaatcgcaactttgagaaagttaggaggctaaaactgctattaagcc 124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 19605 - 19652
Alignment:
Q  163 gccaaaatcgcaactttgaaaaagttagggg-ttaaaactgctattaa 209  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||    
T  19605 gccaaaatcgcaactttgaaaaagttaggggactaaaactgctattaa 19652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 147
Target Start/End: Original strand, 19170 - 19276
Alignment:
Q  41 aacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcggt 140  Q
    ||||||||  ||||||| |||||||  | ||||||||| || | | |||||||| | ||||||| |||||||  ||||  |||||||||||| |||||||    
T  19170 aacacgtggtacctcacgtagggtgctatgtcagcgtagaccgagccaaaattggccttgggggccaaaactaccacatgtgcaaaacttagggggcggt 19269  T
Q  141 tttgtag 147  Q
    |||||||    
T  19270 tttgtag 19276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 203361 - 203408
Alignment:
Q  85 gtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttag 132  Q
    |||||||||||| ||||||| ||||||||||||| |||||||||||||    
T  203361 gtcaaaattgactttgggggccaaaactgtcacaaatgcaaaacttag 203408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 211
Target Start/End: Complemental strand, 21830 - 21659
Alignment:
Q  40 taacacgtgtcacctcacttagggtgtcacgtcagcgtaaactgggtcaaaattgacattgggggtcaaaactgtcacagatgcaaaacttagagggcgg 139  Q
    ||||||||| || ||||||| ||||| |||||||||||| || | ||||||||||   |||||   |||||||| || ||| |||||||||||| | |||    
T  21830 taacacgtgacaactcacttggggtgccacgtcagcgtagaccgagtcaaaattggttttgggaaccaaaactgccatagaggcaaaacttaga-gacgg 21732  T
Q  140 ttttgtag-nnnnnnncttagagtgccaaaatcgcaactttgaaaaagttagg-ggttaaaactgctattaagc 211  Q
    ||||||||        ||||| | | ||||||||||||||| ||||||||||| || ||||||| |||||||||    
T  21731 ttttgtagttttttttcttagtg-gacaaaatcgcaactttaaaaaagttaggaggctaaaactactattaagc 21659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 79162 - 79127
Alignment:
Q  42 acacgtgtcacctcacttagggtgtcacgtcagcgt 77  Q
    ||||||| ||||||||||||||||||||||||||||    
T  79162 acacgtggcacctcacttagggtgtcacgtcagcgt 79127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 3689 - 3639
Alignment:
Q  163 gccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    ||||||||||||||||||  ||||||| |||| ||||||||||||||||||    
T  3689 gccaaaatcgcaactttgggaaagttagggggctaaaactgctattaagcc 3639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 3689 - 3639
Alignment:
Q  163 gccaaaatcgcaactttgaaaaagtta-ggggttaaaactgctattaagcc 212  Q
    ||||||||||||||||||  ||||||| |||| ||||||||||||||||||    
T  3689 gccaaaatcgcaactttgggaaagttagggggctaaaactgctattaagcc 3639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 4216 - 4261
Alignment:
Q  102 gggtcaaaactgtcacagatgcaaaacttagagggcggttttgtag 147  Q
    ||||||||||||  |||| |||||||||||| ||||||||||||||    
T  4216 gggtcaaaactgctacagttgcaaaacttagggggcggttttgtag 4261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University