View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19600_high_1 (Length: 413)
Name: NF19600_high_1
Description: NF19600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19600_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 15 - 397
Target Start/End: Complemental strand, 43378988 - 43378614
Alignment:
| Q |
15 |
agatgaattacagggatgcctccgattttagtagtaaagggatcggatagttcgcgataatcgtttgcccatggtcccggcattcctagcaaaactttac |
114 |
Q |
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| T |
43378988 |
agatgaattacagggatgcctccgattttagtagtaaagggatcggatagttcgcgataatcgtttgcccatggtcccggcattcctagcaaaactttag |
43378889 |
T |
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| Q |
115 |
ccattattacagctgcaaggaccgatttgcttcctccttttcctcctaaattgtaatcagtcgagcttgaatnnnnnnnnnn-cattgagattgtcaaaa |
213 |
Q |
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| T |
43378888 |
ccattattacagctgcaaggaccgatttgcttcctcct---------aaattgtaatcagtcgagcttgaataaaaaaaaaaacattgagattgtcaaaa |
43378798 |
T |
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| Q |
214 |
tatattttaatgcataaattgagtatgtaagttgtagtgtaatactaatagcaaattgatcgatcatgtaatagtttcattaagaagcaagaacatacat |
313 |
Q |
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| T |
43378797 |
tatattttaatgcataaattaagtatgtaagttgtagtgtaatactaatagcaaattgatcgatcatgtaatagtttcattgagaagcaagaacatacat |
43378698 |
T |
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| Q |
314 |
attacgaaactaaaaaacaaagatagcagaaacacataattggaatagtaaataagaagaaagagaacgtaatgaagtactact |
397 |
Q |
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| T |
43378697 |
attacgaaactaaaaaacaaagatagcagaaacacataattggaatagtaaataagaagaaagagaaagtaatgaagtactact |
43378614 |
T |
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