View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19600_low_3 (Length: 355)
Name: NF19600_low_3
Description: NF19600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19600_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 2437626 - 2437849
Alignment:
| Q |
14 |
atggcattccctggcctaattgtaactttagcatcaagcaaactaaagttaacaataggtcaggtcaaaacttgttcaactggtaaccgaaccaaatcac |
113 |
Q |
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| T |
2437626 |
atggcattccctggcctaattgtaactttagcattaagcaaactatagttaacaataggtcaggtcaagacttgttcaactggtaaccgaaccaaatcac |
2437725 |
T |
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| Q |
114 |
attaaaatagaaatactt---atcttaatttgcgattgtaatatgatacataactttagaacaaaaaatgtgacttatgttttgaagtttcatcctttct |
210 |
Q |
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| T |
2437726 |
attaaaatagaaatatttatcatcttaatttgcgattgtaatatgatacataactttagaacaaaaaatgtgacttatgttttgaagtttcatcctttct |
2437825 |
T |
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| Q |
211 |
ctcgagttcacatcgatcctacat |
234 |
Q |
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| T |
2437826 |
ctcgagttcacgtcgattctacat |
2437849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 240 - 339
Target Start/End: Original strand, 2440162 - 2440261
Alignment:
| Q |
240 |
tttgacagtttgcgcttcatatcattggtccatcaagagcgctattcgaagtttctggcctacaaaaaatttgagttagagaaaaatttccggttggaag |
339 |
Q |
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| T |
2440162 |
tttgacagtttgcgcttcatatcattggtccatcaagagcgctattcgaagtttctggcctacaaaaaatttgagttagagaaaaatttccggttggaag |
2440261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 240 - 339
Target Start/End: Complemental strand, 41656943 - 41656844
Alignment:
| Q |
240 |
tttgacagtttgcgcttcatatcattggtccatcaagagcgctattcgaagtttctggcctacaaaaaatttgagttagagaaaaatttccggttggaag |
339 |
Q |
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| T |
41656943 |
tttgacaattttcacttcatatcattggtccatcaagagcactattcgaagtttctggccaacaaaaagtttgtattagaaaaaaaattccagttggaag |
41656844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 255 - 339
Target Start/End: Complemental strand, 41665690 - 41665606
Alignment:
| Q |
255 |
ttcatatcattggtccatcaagagcgctattcgaagtttctggcctacaaaaaatttgagttagagaaaaatttccggttggaag |
339 |
Q |
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| T |
41665690 |
ttcatatcaatggtccatcaagagcgctattcgaagtttctaaccaacaaaaagtttgtgttagaaaaaaatttctggttggaag |
41665606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 254 - 339
Target Start/End: Complemental strand, 41706904 - 41706819
Alignment:
| Q |
254 |
cttcatatcattggtccatcaagagcgctattcgaagtttctggcctacaaaaaatttgagttagagaaaaatttccggttggaag |
339 |
Q |
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| T |
41706904 |
cttcacatcatcggttcatcaagagcgctattctgagtttctggccaacaaaaagtttgtggaagaaaaaaatttccggttggaag |
41706819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 339
Target Start/End: Complemental strand, 41716707 - 41716622
Alignment:
| Q |
254 |
cttcatatcattggtccatcaagagcgctattcgaagtttctggcctacaaaaaatttgagttagagaaaaatttccggttggaag |
339 |
Q |
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||||| ||||||||| |||||| |||| ||||| ||||||||||| ||||||| |||| | ||| || ||||||| |||||||| |
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| T |
41716707 |
cttcacatcattggttcatcaaaagcgttattctgagtttctggccaacaaaaagtttgtgggagaaaacaatttccagttggaag |
41716622 |
T |
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