View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19600_low_4 (Length: 331)
Name: NF19600_low_4
Description: NF19600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19600_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 2 - 167
Target Start/End: Original strand, 29849721 - 29849886
Alignment:
| Q |
2 |
ggatgtcgaagaaaatacagcaccatcaccgcaatctgcaaatgagagtgcaccaatagcacagcattctaaagctgctcaaattactcctattactatc |
101 |
Q |
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|||||||||| || ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29849721 |
ggatgtcgaaccaattacagcagcatcaccacaatctgcaaatgagagtgcaccaatagcacagcattctaaagctgctcaaattactcctattactatc |
29849820 |
T |
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| Q |
102 |
acatcattcacactctttactttgtcgatcctgggcatatgcttgaaatactagtttttattggtc |
167 |
Q |
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| T |
29849821 |
acatcattcacactctttactttgtcaatcctgggcatatgcttgaaatactagtttttattggtc |
29849886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 241 - 317
Target Start/End: Original strand, 29849960 - 29850036
Alignment:
| Q |
241 |
cataggatttggaaggtccttcgtcatcatggtgatattgtttccttttcaatagttagattgtttgtgttgacttt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29849960 |
cataggatttggaaggtccttcgtcatcatggtgataatgtttccttttcaatagttagattgtttgtgttgacttt |
29850036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 46120735 - 46120629
Alignment:
| Q |
18 |
acagcaccatcaccgcaatctgcaaatgagagtgcaccaatagcacagcattctaaagctgctcaaattactcctattactatcacatcattcacactct |
117 |
Q |
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|||||| | ||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||| | |||||||||| |
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| T |
46120735 |
acagcatcctcaccacaatctgcaaatgagaatgcaccaatagcaca---ttctaaagctgctcaaataactcctattactatcacagcgttcacactct |
46120639 |
T |
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| Q |
118 |
ttactttgtc |
127 |
Q |
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|| ||||||| |
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| T |
46120638 |
ttgctttgtc |
46120629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 46133869 - 46133763
Alignment:
| Q |
18 |
acagcaccatcaccgcaatctgcaaatgagagtgcaccaatagcacagcattctaaagctgctcaaattactcctattactatcacatcattcacactct |
117 |
Q |
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|||||| | ||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||| | |||||||||| |
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| T |
46133869 |
acagcatcctcaccacaatctgcaaatgagaatgcaccaatagcaca---ttctaaagctgctcaaataactcctattactatcacagcgttcacactct |
46133773 |
T |
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| Q |
118 |
ttactttgtc |
127 |
Q |
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|| ||||||| |
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| T |
46133772 |
ttgctttgtc |
46133763 |
T |
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