View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19600_low_6 (Length: 256)
Name: NF19600_low_6
Description: NF19600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19600_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 194
Target Start/End: Original strand, 42177976 - 42178166
Alignment:
| Q |
4 |
ataatactctgaaaggtgaaaaaataagtagtacctccaaagtgttgatggtaacattaagcaaagtaggaagagctctgctaccaacatacacatctcc |
103 |
Q |
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| T |
42177976 |
ataatactctcaaaggtgaaaaaataagtagtacctccaaagtgttgatggtaacattaagcaaagtaggaagagctctgctaccaacatacacatctcc |
42178075 |
T |
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| Q |
104 |
ttccacagataaattctcataacgaacttcaatttttggaatttcaatccccaccctatattgtattgcattgcagtcacaaatgtaaaca |
194 |
Q |
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| T |
42178076 |
ttccacagataaattctcataacgaacttcaatttttggaatttcaatccccaccctatattgtattgcattgcagtcacaaatgtaaaca |
42178166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 33 - 228
Target Start/End: Original strand, 42158273 - 42158468
Alignment:
| Q |
33 |
agtacctccaaagtgttgatggtaacattaagcaaagtaggaagagctctgctaccaacatacacatctccttccacagataaattctcataacgaactt |
132 |
Q |
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| T |
42158273 |
agtacctccaatgtattgatggtaacattaagaagagtaggaagagctctgctaccaacatacacatctccttccacagataaattctcataacggactt |
42158372 |
T |
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| Q |
133 |
caatttttggaatttcaatccccaccctatattgtattgcattgcagtcacaaatgtaaacataaccgaatcaaaaacatcatcatcatcactact |
228 |
Q |
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| T |
42158373 |
caatttttggaatttcaatccccaccctacattgtattgcattgcagtcacaaatgtaaacataaccgaatcaaaaacatcatcatcatcactact |
42158468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 25 - 171
Target Start/End: Original strand, 42146313 - 42146459
Alignment:
| Q |
25 |
aaataagtagtacctccaaagtgttgatggtaacattaagcaaagtaggaagagctctgctaccaacatacacatctccttccacagataaattctcata |
124 |
Q |
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||||||||| |||||||||||| ||||||||||||||||||| ||||||||| ||||| || ||||||| |||||||||||||||||| ||||| ||||| |
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| T |
42146313 |
aaataagtactacctccaaagtattgatggtaacattaagcagagtaggaagtgctctacttccaacatgcacatctccttccacagacaaattttcata |
42146412 |
T |
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| Q |
125 |
acgaacttcaatttttggaatttcaatccccaccctatattgtattg |
171 |
Q |
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| T |
42146413 |
acgtacttcaatttttggaatttcaatccccaccctacattgtattg |
42146459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 168
Target Start/End: Original strand, 42137567 - 42137650
Alignment:
| Q |
85 |
taccaacatacacatctccttccacagataaattctcataacgaacttcaatttttggaatttcaatccccaccctatattgta |
168 |
Q |
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||||||||| ||||| ||| ||||| |||| ||| || | || |||||||||||||||||||||||||||||||| ||||||| |
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| T |
42137567 |
taccaacatgcacatttccctccaccgatacattttcgaaccgtacttcaatttttggaatttcaatccccaccctgtattgta |
42137650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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