View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19601_high_1 (Length: 693)

Name: NF19601_high_1
Description: NF19601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19601_high_1
NF19601_high_1
[»] chr4 (1 HSPs)
chr4 (11-678)||(47248194-47248853)


Alignment Details
Target: chr4 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 11 - 678
Target Start/End: Complemental strand, 47248853 - 47248194
Alignment:
Q  11 cataggcgtaaacaatcatggtcattcgataatcttcataaaatttgcaaaagccaacacattgcactggcagttaaaaatcgtattacattataattgg 110  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47248853 cataggcgtaaacaatcatggtcatgcgataatcttcataaaatttgcaaaagccaacacattgcactggcagttaaaaatcgtattacattataattgg 47248754  T
Q  111 gttgcaaagaacctaagacatttgataattctcacattgggctaacctataaatattatcagattttcactataaatcgtaaaatattaagcatataaat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47248753 gttgcaaagaacctaagacatttgataattctcacattgggctagcctataaatattatcagattttcactataaatcgtaaaatattaagcatataaat 47248654  T
Q  211 ctcctcacttatatatagctctcaacataannnnnnnnnatctccctcaacaaaaatttatctgatgggaaacacttcacacgctaacccatgaatatta 310  Q
     |||||||||||||||| ||||||||||||         ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  47248653 ttcctcacttatatatacctctcaacataatttttttt-atctccctcaacaaaaaattatctgatgggaaacacttcacacgctaacccatgaatatta 47248555  T
Q  311 tttgttgaatccatgtgatgagatgacttagggggtctagataagaacatagtcacatagagattaaagtaataaaaatgtcactagttcaacttccctc 410  Q
    |||| |||||||||||||| |||||||||||| |||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||    
T  47248554 tttgctgaatccatgtgataagatgacttaggtggtctagataagaacatag--------agattaaagtaataaaaatgtcactagttcaacttccctc 47248463  T
Q  411 cttcactaacaaaataataactaacaagtgcaacatttgccatttaaaagatactagtattttattaaaaa-catacataagtctactgcatcagtttat 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  47248462 cttcactaacaaaataataactaacaagtgcaacatttgccatttaaaagatactagtattttataaaaaaacatacataagtctactgcatcagtttat 47248363  T
Q  510 atgacgatgtttgggatagactttgcaaagttcacaaattttggtgtaataatttttgcgggaggtctatatcggcttatataattttgttggaaaatgt 609  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47248362 atgacgatgtttgggagagactttgcaaagttcacaaattttggtgtaataatttttgcgggaggtctatatcggcttatataattttgttggaaaatgt 47248263  T
Q  610 tgaagaatctcaattatatgagaggtgaccggaacaccgttgaagtatcagatgatcaagtgttaaagt 678  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  47248262 tgaagaatctcaattatatgagaggtgatcggaacaccgttgaagtgtcagatgatcaagtgttaaagt 47248194  T

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