View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19601_high_2 (Length: 603)

Name: NF19601_high_2
Description: NF19601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19601_high_2
NF19601_high_2
[»] chr5 (2 HSPs)
chr5 (88-343)||(14354618-14354867)
chr5 (475-574)||(14354520-14354619)
[»] chr8 (1 HSPs)
chr8 (17-46)||(18916001-18916030)
[»] chr2 (2 HSPs)
chr2 (17-46)||(15805612-15805641)
chr2 (17-46)||(32597676-32597705)
[»] chr1 (1 HSPs)
chr1 (150-226)||(52814680-52814756)


Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 88 - 343
Target Start/End: Complemental strand, 14354867 - 14354618
Alignment:
Q  88 tacatgtgattggctatttatcatcattagtggggtgatatgagacttagttacaaaacctgatctgcaatttgctttttaactcacaaaacaacactca 187  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14354867 tacatgtgattggctatttatcatcattagtggggtgatatga--cttagttacaaaacctaatctgcaatttgctttttaactcacaaaacaacactca 14354770  T
Q  188 taaaatttcccgaacaatatttcgctacatatagcattgttgatacatacattatttagtagttatggaatgttttgattaatgcataaccgcaacctat 287  Q
    | |||||||| ||||||||||| |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||| || ||||    
T  14354769 tgaaatttccagaacaatattttgctacatatagcattgttgatacat----tatttagtagttatggaatgttttgattaatgcataaccgtaatctat 14354674  T
Q  288 aacacgacattcgtaacagtcaaaatcgtaaaatcatacatatatgtgacaacgat 343  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||    
T  14354673 aacacgacattcgtaacagtcaaaatcgtgaaatcctacatatatgcgacaacgat 14354618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 475 - 574
Target Start/End: Complemental strand, 14354619 - 14354520
Alignment:
Q  475 attattatatataacaaatacatataacaaatggccaacacaacacaatgtctttattgatcagaannnnnnnngttgacaatcttctgaagagaattat 574  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||    
T  14354619 attattatatataacaaatacatataacaaatggccaacacaacacaatgtctttattgatcagaattttttttgttgacaatcttctgaagagaattat 14354520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 18916030 - 18916001
Alignment:
Q  17 tagccatgtattcccggaaatgtcattctt 46  Q
    ||||||||||||||||||||||||||||||    
T  18916030 tagccatgtattcccggaaatgtcattctt 18916001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 15805641 - 15805612
Alignment:
Q  17 tagccatgtattcccggaaatgtcattctt 46  Q
    ||||||||||||||||||||||||||||||    
T  15805641 tagccatgtattcccggaaatgtcattctt 15805612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 32597676 - 32597705
Alignment:
Q  17 tagccatgtattcccggaaatgtcattctt 46  Q
    ||||||||||||||||||||||||||||||    
T  32597676 tagccatgtattcccggaaatgtcattctt 32597705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 226
Target Start/End: Complemental strand, 52814756 - 52814680
Alignment:
Q  150 atctgcaatttgctttttaactcacaaaacaacactcataaaatttcccgaacaatatttcgctacatatagcattg 226  Q
    ||||||| ||| |||||||||| | |||||||||||| |  | ||||| ||| |||| || ||||||||||||||||    
T  52814756 atctgcagtttactttttaactaaaaaaacaacactcgtgtagtttcctgaaaaataatttgctacatatagcattg 52814680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University