View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19601_high_21 (Length: 256)

Name: NF19601_high_21
Description: NF19601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19601_high_21
NF19601_high_21
[»] chr5 (10 HSPs)
chr5 (12-239)||(38967214-38967441)
chr5 (12-239)||(39912535-39912764)
chr5 (15-239)||(39899612-39899837)
chr5 (12-230)||(39858659-39858881)
chr5 (21-154)||(37467676-37467810)
chr5 (14-238)||(39866273-39866499)
chr5 (12-238)||(39849260-39849489)
chr5 (21-116)||(39734684-39734779)
chr5 (12-89)||(39869132-39869209)
chr5 (194-238)||(39727690-39727734)
[»] chr3 (1 HSPs)
chr3 (22-158)||(36057875-36058012)


Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 38967214 - 38967441
Alignment:
Q  12 ataatacttcttaggtggcacgggatgaagaccttgcagaacagataggaaaggatatgtattttgatcttgtagaccatgacaatgtgagcagtttccg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38967214 ataatacttcttaggtggcacgggatgaagaccttgcagaacagataggaaaggatatgtattttgatcttgtagaccatgacaatgtgagcagtttccg 38967313  T
Q  112 tgttcaaaatcagacatctttcacgttttcaaggtatcatcatcaattacactatgcaaatggaaaattaaagaaaacggaatcttgttaattgaggatt 211  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38967314 tgttcagaagcagacatctttcacgttttcaaggtatcatcatcaattacactatgcaaatggaaaattaaagaaaacggaatcttgttaattgaggatt 38967413  T
Q  212 gaagtacaagcactaatgtgattatatt 239  Q
    ||||||||||||||||||||||||||||    
T  38967414 gaagtacaagcactaatgtgattatatt 38967441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 39912764 - 39912535
Alignment:
Q  12 ataatacttcttaggtggcacgggatgaagaccttgcagaacagataggaaaggatatgtattttgatcttgtagaccatgacaatgtgagcagtttccg 111  Q
    |||||||||||||||||  ||| ||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||  || ||||| |||||| |    
T  39912764 ataatacttcttaggtgatacgagatgaagaccttgcagaacagattggaaaggatatatattttaatcttgtagaccatgggaaagtgaggagtttctg 39912665  T
Q  112 tgttcaaaatcagacatc-tttcacgttttcaaggtatcatcatcaattacacta-tgcaaatggaaaattaaagaaaacggaatcttgttaattgagga 209  Q
    ||||||||| |||||||| ||| |||||||||||||||||||||||||||||||| | |||  ||||||||| |||||||||||||||||||||||| ||    
T  39912664 tgttcaaaagcagacatcatttaacgttttcaaggtatcatcatcaattacactattacaacgggaaaattagagaaaacggaatcttgttaattgatga 39912565  T
Q  210 ttgaagtacaagcactaatgtgattatatt 239  Q
    ||||||||||||||||||||||||||||||    
T  39912564 ttgaagtacaagcactaatgtgattatatt 39912535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 39899837 - 39899612
Alignment:
Q  15 atacttcttaggtggcacgggatgaagaccttgcagaacagataggaaaggatatgtattttgatcttgtagaccatgacaatgtgagcagtttccgtgt 114  Q
    ||||||||||||||| ||| || |||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||| ||| | | ||||  |||    
T  39899837 atacttcttaggtggtacgagacgaagaccttgcaaaacagattggaaaggatatatattttgatcttgtagaccatgacaaagtggggattttctatgt 39899738  T
Q  115 tcaaaatcagacatc-tttcacgttttcaaggtatcatcatcaattacactatgcaaatggaaaattaaagaaaacggaatcttgttaattgaggattga 213  Q
    |||||  |||| ||| ||| ||| ||| ||||||||||||||||||||||||||   |  |||||||| ||||||||||||||||||||||||  |||||    
T  39899737 tcaaaggcagaaatcatttaacgatttaaaggtatcatcatcaattacactatgactaccgaaaattagagaaaacggaatcttgttaattgataattga 39899638  T
Q  214 agtacaagcactaatgtgattatatt 239  Q
    ||||||||||||||||||||||||||    
T  39899637 agtacaagcactaatgtgattatatt 39899612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 39858881 - 39858659
Alignment:
Q  12 ataatacttcttaggtggcacgggatgaagaccttgcagaacagataggaaaggatatgtattttgatcttgtagaccatgacaatgtgagcagtttccg 111  Q
    ||||||||||| |||||| ||| |||||||||||||||||||| || ||||| || || ||||||||||| ||||||| |||||| ||||| ||||||||    
T  39858881 ataatacttctaaggtggtacgagatgaagaccttgcagaacaaattggaaatgacatatattttgatctcgtagaccttgacaaagtgaggagtttccg 39858782  T
Q  112 tgttcaaaatcagacatc-tttcacgttttcaaggtatc--atcatcaattacactatgcaaatggaaaatta-aagaaaacggaatcttgttaattgag 207  Q
    |||| |||| ||||| || ||| ||||||||||||||||  ||||||| ||||||| |   | |||||||||| |  ||||| | |||||||||||||||    
T  39858781 tgttaaaaagcagacgtcatttaacgttttcaaggtatcatatcatcagttacactcttacattggaaaattagacaaaaaccgtatcttgttaattgag 39858682  T
Q  208 gattgaagtacaagcactaatgt 230  Q
    ||||||| |||||| ||||||||    
T  39858681 gattgaaatacaagtactaatgt 39858659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 154
Target Start/End: Complemental strand, 37467810 - 37467676
Alignment:
Q  21 cttaggtggcacgggatgaagaccttgcagaacagataggaaaggatatgtattttgatcttgtagaccatgacaatgtgagcagtttccgtgttcaaaa 120  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||||| ||||||||||||||||| |||||||| ||| | ||||||||||| |||||    
T  37467810 cttaggtggcacgggatgaagatcttggagaacagattggaaaggatatatattttgatcttgtagaacatgacaaagtgcggagtttccgtgtacaaaa 37467711  T
Q  121 tcagacatc-tttcacgttttcaaggtatcatcat 154  Q
     |||||| | ||| |||||||||||||||||||||    
T  37467710 gcagacaccatttaacgttttcaaggtatcatcat 37467676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 14 - 238
Target Start/End: Complemental strand, 39866499 - 39866273
Alignment:
Q  14 aatacttcttaggtggcacgggatgaagaccttgcagaacagataggaaaggatatgtattttgatcttgtagaccatgacaatgtgagcagtttccgtg 113  Q
    ||||||||| |||| | ||| ||||||||||||||| ||||| | |||||| |||| ||||||||||| |||||| ||||||| ||||| | ||||| ||    
T  39866499 aatacttctcaggttgtacgagatgaagaccttgcaaaacaggttggaaagtatatatattttgatctcgtagactatgacaaagtgaggattttccatg 39866400  T
Q  114 ttcaaaatcagacatc-tttcacgttttcaaggtatcatcatcaattacactatgcaaatggaaaatta-aagaaaacggaatcttgttaattgaggatt 211  Q
    ||||||| ||||  || ||| || |||||||||||||||||||| ||||| | |     || ||||| | | |||| | ||||||| | |||||||||||    
T  39866399 ttcaaaagcagatgtcatttaacattttcaaggtatcatcatcagttacagtcttacgttgtaaaataagaggaaatctgaatcttatcaattgaggatt 39866300  T
Q  212 gaagtacaagcactaatgtgattatat 238  Q
    || ||||||||||||||||||||||||    
T  39866299 gatgtacaagcactaatgtgattatat 39866273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 238
Target Start/End: Complemental strand, 39849489 - 39849260
Alignment:
Q  12 ataatacttcttaggtggcacgggatgaagaccttgcagaacagataggaaaggatatgtattttgatcttgtagaccatgacaatgtgagcagtttccg 111  Q
    |||||||||| ||||||| ||| ||||| ||| |||||||||| || ||||| ||| | ||||||||||||||||||| ||| || ||||| ||||||||    
T  39849489 ataatacttcctaggtggtacgagatgaggactttgcagaacaaattggaaatgatttatattttgatcttgtagaccttgataaagtgaggagtttccg 39849390  T
Q  112 tgttcaaaatcagacatc-tttcacgttttcaaggtatc--atcatcaattacactatgcaaatggaaaattaaagaaaacggaatcttgttaattgagg 208  Q
    ||||||||| ||| | || ||| ||||||||||||||||  ||||||  |||| || |   | |||||| || |  || ||  |||||| |||||||||     
T  39849389 tgttcaaaagcaggcgtcgtttaacgttttcaaggtatcgtatcatcggttactctcttacattggaaatttgagaaagacttaatctttttaattgaga 39849290  T
Q  209 attgaagtacaagcactaatgtgattatat 238  Q
    |||||||||||| | |||||||||||||||    
T  39849289 attgaagtacaaaccctaatgtgattatat 39849260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 39734684 - 39734779
Alignment:
Q  21 cttaggtggcacgggatgaagaccttgcagaacagataggaaaggatatgtattttgatcttgtagaccatgacaatgtgagcagtttccgtgttc 116  Q
    ||||||||| ||| ||||||||||||||| ||||||| ||||||||||| |||||||||||||| |||| |||||| ||||||||||| |||||||    
T  39734684 cttaggtggtacgagatgaagaccttgcacaacagattggaaaggatatatattttgatcttgttgaccctgacaaagtgagcagttttcgtgttc 39734779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 39869209 - 39869132
Alignment:
Q  12 ataatacttcttaggtggcacgggatgaagaccttgcagaacagataggaaaggatatgtattttgatcttgtagacc 89  Q
    |||||||||||||||| | ||| ||||||||||| ||||||||||| ||||||||||| | ||||||||| |||||||    
T  39869209 ataatacttcttaggtagtacgagatgaagacctggcagaacagattggaaaggatatatgttttgatctcgtagacc 39869132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 39727690 - 39727734
Alignment:
Q  194 tcttgttaattgaggattgaagtacaagcactaatgtgattatat 238  Q
    |||||| ||||||||||| | ||||||||||||||||||||||||    
T  39727690 tcttgtcaattgaggatttatgtacaagcactaatgtgattatat 39727734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 36057875 - 36058012
Alignment:
Q  22 ttaggtggcacgggatgaagaccttgcagaacagataggaaaggatatgtattttgatcttgtagaccatgacaatgtgagcagtttccgtgttcaaaat 121  Q
    |||||||||||||||||||||| ||| ||  ||||| ||||||||||| || ||||||||||||||||| ||||| ||||| ||||||||||| |||||     
T  36057875 ttaggtggcacgggatgaagacattgaagggcagatgggaaaggatatctactttgatcttgtagaccacgacaaagtgagaagtttccgtgtacaaaag 36057974  T
Q  122 cagacatc-tttcacgttttcaaggtatcatcatcaat 158  Q
    |||||| | ||| | ||||||||||||||| |||||||    
T  36057975 cagacaccttttaatgttttcaaggtatcaccatcaat 36058012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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