View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19601_high_27 (Length: 238)
Name: NF19601_high_27
Description: NF19601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19601_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 12000446 - 12000242
Alignment:
| Q |
18 |
gtatgtttgttgtcttaataattgctgaactgaactagtatgaagcatattaccatacaccgataagaactcggcttcaaaatctttctatcagaatttt |
117 |
Q |
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| T |
12000446 |
gtatgtttgttgtcttaatcattg---aactgaactagtatgaagcatattaccatatactgataagaactcggcttcaaaatctttctatcagaatttt |
12000350 |
T |
|
| Q |
118 |
gataacattttagggtaaaaggagacggttagtatagacactaaacttgacactaaaaattgaaataagattcattaacagaacaaataaacttaagatc |
217 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12000349 |
gataacattttagggtaaaaggagacggttagtttagacactaaacttgacactaaaaattgaaataagattcattaacagaacaaataaacttaagatc |
12000250 |
T |
|
| Q |
218 |
tggaccta |
225 |
Q |
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|||||||| |
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| T |
12000249 |
tggaccta |
12000242 |
T |
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