View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19601_high_3 (Length: 562)
Name: NF19601_high_3
Description: NF19601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19601_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 137 - 418
Target Start/End: Complemental strand, 48569421 - 48569141
Alignment:
| Q |
137 |
aattcataatcaattttcacacagaaaacagaagtattggaaaggctgtggtacaaccaaagaaaggaaatgccttgaaggtatttc-agaagatgtcaa |
235 |
Q |
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| T |
48569421 |
aattcataatcaattttcaca--gaaaacagaagtattggaaaggctgtggtacaaccaaagaaaggaaatgccttgaaggtatttccagaagatgtcaa |
48569324 |
T |
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| Q |
236 |
ccttccaagagtagaccaaagtaccataattttccatgaatataccttaaaagatgaggatcctgaatggtcttcattaggctgaacaaccatatgggcc |
335 |
Q |
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| T |
48569323 |
ccttccaagagtagaccaaagtaccataattttctatgaatataccttaaaagatgaggatcctgaatggtcttcattaggctgaacaaccatatgggcc |
48569224 |
T |
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| Q |
336 |
attggagcatttccaacaaaataggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaagatttc |
418 |
Q |
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| T |
48569223 |
attggagcatttccaaccaaaaaggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaagatttc |
48569141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 4 - 112
Target Start/End: Complemental strand, 48569522 - 48569420
Alignment:
| Q |
4 |
tgtcacccaaacaaaatcctcgcattttctaaagtcaaacttgtttttagcaattacttgggacttgatcatgacgaagaatttctatcggaagatttca |
103 |
Q |
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| T |
48569522 |
tgtcacccaaacaaaatcctcgcattttctaaagtcaaacttgtttttagcaattacttgggact------tgaagaagaatttatatcggaagatttca |
48569429 |
T |
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| Q |
104 |
gcaaaggaa |
112 |
Q |
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| T |
48569428 |
gcaaaggaa |
48569420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 477 - 549
Target Start/End: Complemental strand, 48569090 - 48569018
Alignment:
| Q |
477 |
ccacaatgaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtt |
549 |
Q |
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| T |
48569090 |
ccacaatgaatgttcaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtt |
48569018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 226 - 412
Target Start/End: Original strand, 10821749 - 10821937
Alignment:
| Q |
226 |
aagatgtcaaccttccaagagtagaccaaagtaccataa--ttttccatgaatataccttaaaagatgaggatcctgaatggtcttcattaggctgaaca |
323 |
Q |
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|||||||||||||||||| |||||| |||||||| || ||| | | || ||||||||||||||| ||||||| || ||||| |||||||||||| |
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| T |
10821749 |
aagatgtcaaccttccaatagtagattgaagtaccacaaaatttcctttaaacataccttaaaagatgttgatcctgtctgctcttctttaggctgaaca |
10821848 |
T |
|
| Q |
324 |
accatatgggccattggagcatttccaacaaaataggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaa |
412 |
Q |
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||| |||||||||| ||||||||||| |||||||| ||||| || |||||||||| |||||||||||| ||||| || ||||||||||| |
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| T |
10821849 |
accgtatgggccatcggagcatttccgacaaaatatgtattcgaaagatctcctaagactgatttcaaggcagattctgcacactgcaa |
10821937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 277 - 412
Target Start/End: Complemental strand, 36145584 - 36145449
Alignment:
| Q |
277 |
ataccttaaaagatgaggatcctgaatggtcttcattaggctgaacaaccatatgggccattggagcatttccaacaaaataggtattggagagatctcc |
376 |
Q |
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||||||||||||||| ||||||| || ||||| |||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| || |||||||| |
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| T |
36145584 |
ataccttaaaagatgttgatcctgtctgctcttctttaggctgaacaacaatatgggccatcggagcatttccgacaaaatatgtatttgaaagatctcc |
36145485 |
T |
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| Q |
377 |
tatgactgatttcaatgcagactcagcacactgcaa |
412 |
Q |
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| T |
36145484 |
caagactgatttcaaggcagattctgcacactgcaa |
36145449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 5 - 130
Target Start/End: Original strand, 10821493 - 10821612
Alignment:
| Q |
5 |
gtcacccaaacaaaatcctcgcattttctaaagtcaaacttgtttttagcaattacttgggacttgatcatgacgaagaatttctatcggaagatttcag |
104 |
Q |
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|||||||||||||| ||||||||||| | || ||| ||||||||||||||||||||||| || | ||| ||||||||||| | |||||||| || |
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| T |
10821493 |
gtcacccaaacaaagtcctcgcatttgccaatgtcgaacttgtttttagcaattacttgtgatt------tgaagaagaatttctgacagaagatttaag |
10821586 |
T |
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| Q |
105 |
caaaggaaaaaatgagcaagtataat |
130 |
Q |
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| T |
10821587 |
caaaggaaagaatgagcaagtataat |
10821612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 547
Target Start/End: Original strand, 10822202 - 10822265
Alignment:
| Q |
484 |
gaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacagg |
547 |
Q |
| |
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||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
10822202 |
gaatgttcaccttacgcatagtttcctctgattcatatactttttctggaaaatgccacacagg |
10822265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 547
Target Start/End: Complemental strand, 36145194 - 36145131
Alignment:
| Q |
484 |
gaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacagg |
547 |
Q |
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||||||| |||||||||||||| |||||||||||||| ||| |||||||||||||||||||| |
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| T |
36145194 |
gaatgttcaccttacgcatggtatcctctgattcatatactttttctggaaaatgccacacagg |
36145131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 36145895 - 36145837
Alignment:
| Q |
5 |
gtcacccaaacaaaatcctcgcattttctaaagtcaaacttgtttttagcaattacttg |
63 |
Q |
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| T |
36145895 |
gtcacccaaacaaagtcctcacctttgccaatgtcgaacttgtttttagcaattacttg |
36145837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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