View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19601_high_34 (Length: 207)
Name: NF19601_high_34
Description: NF19601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19601_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 29 - 189
Target Start/End: Complemental strand, 7062827 - 7062667
Alignment:
| Q |
29 |
tgaaccttgaaaagacaattaaagagaaggtggattcaacattgtcaagaaagtagttggctctacaaggtacctatacaataaacaaactttatatttg |
128 |
Q |
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| T |
7062827 |
tgaaccttgaaaagacaattaaagagaaggtggtttcaacattgtcaagaaagtagttggctctacaaggtacctatacaataaacaaactttatatttg |
7062728 |
T |
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| Q |
129 |
ttttacagttggataaatcaatagaaggtctcacctgatggatgccaaaagagaaacaagg |
189 |
Q |
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| T |
7062727 |
ttttacagttggataaatcaatagaaggtctcaactgatggatgccaaaagagaaacaagg |
7062667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 180
Target Start/End: Complemental strand, 7010737 - 7010708
Alignment:
| Q |
151 |
agaaggtctcacctgatggatgccaaaaga |
180 |
Q |
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| T |
7010737 |
agaaggtctcacctgatggatgccaaaaga |
7010708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 180
Target Start/End: Complemental strand, 7026095 - 7026066
Alignment:
| Q |
151 |
agaaggtctcacctgatggatgccaaaaga |
180 |
Q |
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| T |
7026095 |
agaaggtctcacctgatggatgccaaaaga |
7026066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 180
Target Start/End: Complemental strand, 7056581 - 7056552
Alignment:
| Q |
151 |
agaaggtctcacctgatggatgccaaaaga |
180 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
7056581 |
agaaggtctcacctgatggatgccaaaaga |
7056552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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