View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19601_high_6 (Length: 407)
Name: NF19601_high_6
Description: NF19601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19601_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 15 - 391
Target Start/End: Original strand, 41469797 - 41470173
Alignment:
| Q |
15 |
tatgaaaaagccattcttcaactagaagctcggaggaatgagcttatgtcacgtgaaaaggatctgcagaagggtcaagaagataattacatcgagagaa |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41469797 |
tatgaaaaagccattcttcaactagaagctcggaggaatgagcttatgtcacgtgaaaaggatctgcagaagggtcaagaagataattacatcgagagaa |
41469896 |
T |
|
| Q |
115 |
ataagcaatattttcagacgggccatgtaatttcttttagctcttcggatttatggtagcaatgctaaatgagtaattatctctttttaacgctctcttg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41469897 |
ataagcaatattttcagacgggccatgtaatttcttttagctcttcggatttatggtagcaatgctaaatgagtaattatctctttttaatgctctcttg |
41469996 |
T |
|
| Q |
215 |
aacacactttttctgataggtctacttcttaaaatctcaacacattttttgaaagtcatcattttatagaactaaatcggcttctttaaaagtggaccaa |
314 |
Q |
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|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41469997 |
aacacactttttctgataggtctacttcttaaaatcccaacacattttttgaaagtcatcattttacagaactaaatcggcttctttaaaagtggaccaa |
41470096 |
T |
|
| Q |
315 |
tcacaaaaagtattgtttattgaagttgtttggagtttcttaggagtcccacattgctcaggttctcaggatgttgg |
391 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
41470097 |
tcacaaaaagtattgtttattgaagttgtttggagtttcttaggagtcccacgttgctcaggttctcaggatgttgg |
41470173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 34 - 325
Target Start/End: Original strand, 41476828 - 41477123
Alignment:
| Q |
34 |
aactagaagctcggaggaatgagcttatgtcacgtgaaaaggatctgcagaagggtcaagaagataattacatcgagagaaataagcaatattttcagac |
133 |
Q |
| |
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|||| ||| ||||||||||||| |||| ||| ||||||||||||||||||||| |||||| ||||||| || |||||||| |||| |||| || ||| |
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| T |
41476828 |
aactggaaactcggaggaatgaacttaagtcccgtgaaaaggatctgcagaagcgtcaagcagataatctcaatgagagaaacaagctatatcttgagaa |
41476927 |
T |
|
| Q |
134 |
gggccatgtaatttcttttagctcttcggatttatggtagcaatgctaaatgagtaattatctctttttaacgctctcttgaacacactttttctgatag |
233 |
Q |
| |
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| ||||||| | |||| |||||| | ||||||||||||||||||||||| ||||| |||| ||||||| ||||||||||||||||||||||||||| |
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| T |
41476928 |
gaaaaatgtaatgtattttggctctttgagtttatggtagcaatgctaaatgaataattctctccttttaaccctctcttgaacacactttttctgatag |
41477027 |
T |
|
| Q |
234 |
gtctacttcttaaaatctcaacacatt-ttttgaaagtcatcatttta---tagaactaaatcggcttctttaaaagtggaccaatcacaaaaagt |
325 |
Q |
| |
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||||| ||||||||| |||||||| ||||||||| |||| |||| |||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
41477028 |
gtctatttcttaaaaatataacacattactttgaaagtgatcaatttacaggagaactaaatttgcttctttaaaaatggaccaatcacaaaaagt |
41477123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 34 - 331
Target Start/End: Original strand, 40751077 - 40751384
Alignment:
| Q |
34 |
aactagaagctcggaggaatgagcttatgtcacgtgaaaaggatctgcagaagggtcaagaagataattacatcgagagaaataagcaatattttcagac |
133 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| ||||| |||||||| |||||| |||||| ||||||| ||| ||||||| |||| ||||||| ||| |
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| T |
40751077 |
aactggaagctcggaggaatgaacttatgtcccgtgagaaggatctacagaagcgtcaagcagataatcacaatgagagaaccaagctatattttgagaa |
40751176 |
T |
|
| Q |
134 |
gggccatgtaatttcttttagctcttcggatttatggtagcaatgctaaatgagtaattatctc-------tttttaacgctctcttgaacacacttttt |
226 |
Q |
| |
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| |||||||| | |||| |||||| | ||||||||||||||||||| |||| ||||| |||| ||||||| ||||||| |||||||||||| |
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|
| T |
40751177 |
gaaacatgtaatgtattttggctctttgaatttatggtagcaatgctagatgaataattctctccttttaagttttaaccctctcttaaacacacttttt |
40751276 |
T |
|
| Q |
227 |
-ctgataggtctacttcttaaaatctcaacacattt-tttgaaagtcatcatttta---tagaactaaatcggcttctttaaaagtggaccaatcacaaa |
321 |
Q |
| |
|
|||||| |||| ||| |||||| | ||||||||| ||||||||| |||| |||| |||||||||| ||||||||||||| ||||||||||||||| |
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|
| T |
40751277 |
cctgata-gtctgtttc-taaaattttaacacatttctttgaaagtgatcaatttacaggagaactaaattggcttctttaaaaatggaccaatcacaaa |
40751374 |
T |
|
| Q |
322 |
aagtattgtt |
331 |
Q |
| |
|
|||| ||||| |
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|
| T |
40751375 |
aagtgttgtt |
40751384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 16 - 331
Target Start/End: Original strand, 41483853 - 41484170
Alignment:
| Q |
16 |
atgaaaaagccattcttcaactagaagctcggaggaatgagcttatgtcacgtgaaaaggatctgcagaagggtcaagaagataattacatcgagagaaa |
115 |
Q |
| |
|
|||||||||||| || |||| |||||||||||||| |||||||| || ||||| ||||||||||||||| || ||| ||||||| ||| |||| | |
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|
| T |
41483853 |
atgaaaaagccaggctggaactggaagctcggaggaacgagcttatttcccgtgagaaggatctgcagaagcgtgaagtagataatcacaatgagaaagc |
41483952 |
T |
|
| Q |
116 |
taagcaatattttcagacgggccatgtaatttcttttagctcttcggatttatggtagcaatgctaaatgagtaattatctctttttaacgctctcttga |
215 |
Q |
| |
|
|||| ||||||| ||| | |||||||| | ||| |||||| ||||||| |||||||||||||||| | ||| |||| ||||||| ||||| ||| |
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|
| T |
41483953 |
caagctatattttgagaagcaacatgtaatgtatttcggctcttttaatttatgatagcaatgctaaatgaattattctctccttttaaccctctcatga |
41484052 |
T |
|
| Q |
216 |
acacactttttctgataggtctacttcttaaaatctcaacacattt-tttgaaagtcatcatttta---tagaactaaatcggcttctttaaaagtggac |
311 |
Q |
| |
|
|||||| |||| ||||||||| | ||| |||||| | ||||||||| ||||||||| |||| |||| |||||||||| |||||||||||| ||||| |
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|
| T |
41484053 |
acacac-ttttgtgataggtcaatttc-taaaattttaacacatttctttgaaagtgatcaatttacaggagaactaaatttgcttctttaaaaatggac |
41484150 |
T |
|
| Q |
312 |
caatcacaaaaagtattgtt |
331 |
Q |
| |
|
|||||||||||||| ||||| |
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|
| T |
41484151 |
caatcacaaaaagtgttgtt |
41484170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 16413401 - 16413043
Alignment:
| Q |
18 |
gaaaaagccattcttcaactagaagctcggaggaatgagcttatgtcacgtgaaaaggatctgcagaagggtcaagaagataattacatcgagagaaata |
117 |
Q |
| |
|
||||||||||| || |||| ||||| | ||||||||| ||||||| ||| |||||||||||||||||| | |||||||||||| |||| | |||||||| |
|
|
| T |
16413401 |
gaaaaagccatactggaactggaagcgctgaggaatgaacttatgttacgagaaaaggatctgcagaagcgacaagaagataatcacattgtgagaaata |
16413302 |
T |
|
| Q |
118 |
agcaatattttcagacgggccatgtaatttcttttagctcttcggatttatggtagcaatgctaaatgagtaattatctctttttaacgctctcttgaac |
217 |
Q |
| |
|
||| ||||||||| || |||||||||| ||||||||||| | ||||||||||||||||||||| |||||||| ||||||||||| |
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|
| T |
16413301 |
agctatattttcaaacaaaacatgtaatttattttagctctttgaatttatggtagcaatgctaaa-gagtaatt--------------ctctcttgaac |
16413217 |
T |
|
| Q |
218 |
acactttttctgataggtctacttcttaaaatctcaacacattttttgaaagtcatcat-tttatagaactaaatcggcttctttaaaagtggaccaatc |
316 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||| | ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
16413216 |
acactttttttgataggtctatttcttaaaatcttagcacattttttgaaagtcatcaaatttacagaactaaatcggcttctttaaaagtggaccaatc |
16413117 |
T |
|
| Q |
317 |
acaaaaagtattgtttattgaagttgtttggagtttcttaggagtcccacattgctcaggttctcaggatgttg |
390 |
Q |
| |
|
||||||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
16413116 |
acaaaaagtgttgtttattgaggttgtctggagtttcttaggagtcccccattgctcagtttctcaggatgttg |
16413043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 16408979 - 16408870
Alignment:
| Q |
16 |
atgaaaaagccattcttcaactagaagctcggaggaatgagcttatgtcacgtgaaaaggatctgcagaagggtcaagaagataattacatcgagagaaa |
115 |
Q |
| |
|
|||||||||||| || ||||||||||| ||| |||||||||||||| ||||||||||||||||||||| |||||| ||||||| ||| |||||||| |
|
|
| T |
16408979 |
atgaaaaagccaggctggaactagaagcttggaaaaatgagcttatgtcccgtgaaaaggatctgcagaagcgtcaagcagataatcacaatgagagaaa |
16408880 |
T |
|
| Q |
116 |
taagcaatat |
125 |
Q |
| |
|
||||| |||| |
|
|
| T |
16408879 |
taagctatat |
16408870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 52471940 - 52472101
Alignment:
| Q |
16 |
atgaaaaagccattcttcaactagaagctcggaggaatgagcttatgtcacgtgaaaaggatctgcagaagggtcaagaagataattacatcgagagaaa |
115 |
Q |
| |
|
||||||||||||| | |||| |||||| |||||||||| |||||||| ||||||| ||||||||||||| |||||| ||||||| ||| ||||| || |
|
|
| T |
52471940 |
atgaaaaagccatgttggaactggaagctaggaggaatgaacttatgtcccgtgaaatggatctgcagaagcgtcaagtagataatgacaatgagagcaa |
52472039 |
T |
|
| Q |
116 |
taagcaatattttcagacgggccatgtaatttcttttagctcttcggatttatggtagcaat |
177 |
Q |
| |
|
||||| |||| || ||| | || ||||||| |||| |||||||| |||||||||||||| |
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|
| T |
52472040 |
taagctatatcttgagaggaaacaggtaatttattttggctcttcgattttatggtagcaat |
52472101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 16408839 - 16408800
Alignment:
| Q |
194 |
tctctttttaacgctctcttgaacacactttttctgataggt |
235 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16408839 |
tctctttttaac--tctcttgaacacactttttctgataggt |
16408800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 390
Target Start/End: Complemental strand, 23564400 - 23564344
Alignment:
| Q |
334 |
ttgaagttgtttggagtttcttaggagtcccacattgctcaggttctcaggatgttg |
390 |
Q |
| |
|
||||||||||||| ||||| ||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
23564400 |
ttgaagttgtttgtagtttgttatttgtcccacattgctcaggttttcaggttgttg |
23564344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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