View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19601_low_13 (Length: 340)

Name: NF19601_low_13
Description: NF19601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19601_low_13
NF19601_low_13
[»] chr2 (11 HSPs)
chr2 (19-330)||(29548923-29549215)
chr2 (151-330)||(29511021-29511200)
chr2 (151-330)||(29518139-29518318)
chr2 (151-330)||(29507201-29507380)
chr2 (151-330)||(29535275-29535454)
chr2 (151-330)||(29541435-29541614)
chr2 (150-320)||(29490449-29490619)
chr2 (150-303)||(29488369-29488522)
chr2 (184-320)||(29505414-29505550)
chr2 (147-320)||(30256547-30256720)
chr2 (164-330)||(29502540-29502706)
[»] chr4 (1 HSPs)
chr4 (152-300)||(51266291-51266439)
[»] scaffold0186 (1 HSPs)
scaffold0186 (233-330)||(9161-9258)
[»] chr8 (1 HSPs)
chr8 (233-330)||(18874658-18874755)


Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 330
Target Start/End: Original strand, 29548923 - 29549215
Alignment:
Q  19 ctagccttaccacacattcaatttttggcagattatcacattaagcctaccaatgtagcagaagctactaaagaaaaaatagcattttaatatactatga 118  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||        | ||           ||||||||||||||||||||||||    
T  29548923 ctagccataccacacattcaatttttggcagattatcacattaagcctaccaa--------atgc-----------aaatagcattttaatatactatga 29549003  T
Q  119 ttaagaaattctagaaacaatcaaatgcaaattaccttcttatcaatataatcagcccaaaataaagcttgtgatctctgataaggatcagaaggcaaca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29549004 ttaagaaattctagaaacaatcaaatgcaaattaccttcttatcaatataatcagcccaaaataaagcttgtgatctctgataaggatcagaaggcaaca 29549103  T
Q  219 aaggagatttctcattccaaacttcatcaatatattgaacagcaattaaagattcacaaatgggttttccattatgaataagaacagggattttcttctg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29549104 aaggagatttctcattccaaacttcatcaatatattgaacagcaattaaagattcacaaatgggttttccattatgaataagaacagggattttcttctg 29549203  T

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Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 151 - 330
Target Start/End: Original strand, 29511021 - 29511200
Alignment:
Q  151 taccttcttatcaatataatcagcccaaaataaagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacttcatcaata 250  Q
    |||||||||||||| |||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29511021 taccttcttatcaacataatcagcccagaatctagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacttcatcaata 29511120  T
Q  251 tattgaacagcaattaaagattcacaaatgggttttccattatgaataagaacagggattttcttctgaaccgggttcat 330  Q
    ||||||||||||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||| ||||| ||||||||    
T  29511121 tattgaacagcaattaaagattcacaaattgatttaccattatgaataagaactgggattttcttatgaacagggttcat 29511200  T

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Target: chr2; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 151 - 330
Target Start/End: Original strand, 29518139 - 29518318
Alignment:
Q  151 taccttcttatcaatataatcagcccaaaataaagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacttcatcaata 250  Q
    |||||||||||||| |||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29518139 taccttcttatcaacataatcagcccagaatctagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacctcatcaata 29518238  T
Q  251 tattgaacagcaattaaagattcacaaatgggttttccattatgaataagaacagggattttcttctgaaccgggttcat 330  Q
    || |||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| ||||| ||||||||    
T  29518239 tactgaacagcaattaaagattcacaaattgatttaccattatgaataagaacagggattttcttatgaacagggttcat 29518318  T

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Target: chr2; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 151 - 330
Target Start/End: Original strand, 29507201 - 29507380
Alignment:
Q  151 taccttcttatcaatataatcagcccaaaataaagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacttcatcaata 250  Q
    ||||||||||||||||||||||||||| |||  |||||||| | ||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||    
T  29507201 taccttcttatcaatataatcagcccagaatctagcttgtgctttctgatatggatcagaaggcaagaaaggagatttatcattccaaacctcatcaata 29507300  T
Q  251 tattgaacagcaattaaagattcacaaatgggttttccattatgaataagaacagggattttcttctgaaccgggttcat 330  Q
    ||||||||||||||||||||||||||||  ||||| ||||||||||| ||||||||||||||||| ||||| ||||||||    
T  29507301 tattgaacagcaattaaagattcacaaactggtttaccattatgaatgagaacagggattttcttgtgaacagggttcat 29507380  T

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Target: chr2; HSP #5
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 151 - 330
Target Start/End: Original strand, 29535275 - 29535454
Alignment:
Q  151 taccttcttatcaatataatcagcccaaaataaagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacttcatcaata 250  Q
    |||||||||||||| |||||||||||| ||   |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  29535275 taccttcttatcaacataatcagcccagaacctagcttgtgatctctgataaggatcagaaggcaacaaagaagatttctcattccaaacctcatcaata 29535374  T
Q  251 tattgaacagcaattaaagattcacaaatgggttttccattatgaataagaacagggattttcttctgaaccgggttcat 330  Q
    || |||||||| ||||||||||||||||| | ||| ||||||||||| ||||||||||||||||| ||||  ||||||||    
T  29535375 tactgaacagccattaaagattcacaaattgatttaccattatgaattagaacagggattttcttgtgaatagggttcat 29535454  T

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Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 151 - 330
Target Start/End: Original strand, 29541435 - 29541614
Alignment:
Q  151 taccttcttatcaatataatcagcccaaaataaagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacttcatcaata 250  Q
    |||||||||||||| ||| ||||||||||||  |||||||| |||||| || |||||||||||||||||||||||| | || |||||||| |||||||||    
T  29541435 taccttcttatcaacatagtcagcccaaaatctagcttgtgctctctggtagggatcagaaggcaacaaaggagatctatccttccaaacctcatcaata 29541534  T
Q  251 tattgaacagcaattaaagattcacaaatgggttttccattatgaataagaacagggattttcttctgaaccgggttcat 330  Q
    || | ||||   |  |  || |||||||| ||||| ||||| || || ||||| ||||||||||| ||||||||||||||    
T  29541535 tactcaacaattacaagtgactcacaaataggtttgccattgtggattagaaccgggattttcttgtgaaccgggttcat 29541614  T

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Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 150 - 320
Target Start/End: Complemental strand, 29490619 - 29490449
Alignment:
Q  150 ttaccttcttatcaatataatcagcccaaaataaagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacttcatcaat 249  Q
    ||||||| ||||||||||||||| ||||||||  |||||| | ||||| |||||||||||||||||  || |||| ||| ||||||||||| ||||| ||    
T  29490619 ttacctttttatcaatataatcaacccaaaatctagcttgagctctctcataaggatcagaaggcatgaatggagctttatcattccaaacctcatctat 29490520  T
Q  250 atattgaacagcaattaaagattcacaaatgggttttccattatgaataagaacagggattttcttctgaa 320  Q
    ||| || |||  |||    ||||||||||  ||||||||||||||||||||||| || |||||||| ||||    
T  29490519 atactggacaataatagctgattcacaaacaggttttccattatgaataagaactggaattttcttatgaa 29490449  T

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Target: chr2; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 303
Target Start/End: Complemental strand, 29488522 - 29488369
Alignment:
Q  150 ttaccttcttatcaatataatcagcccaaaataaagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacttcatcaat 249  Q
    ||||||| || ||| |||||||| ||||||||  |||||| | ||||| |||||||||||||||||  || | || ||| ||||||||||||||||| ||    
T  29488522 ttacctttttgtcactataatcaacccaaaatctagcttgagctctctcataaggatcagaaggcatgaatgaagctttatcattccaaacttcatctat 29488423  T
Q  250 atattgaacagcaattaaagattcacaaatgggttttccattatgaataagaac 303  Q
     ||||| |||  ||||  |||||||||||||| |||||||||||| ||||||||    
T  29488422 gtattgcacaataattgcagattcacaaatggattttccattatggataagaac 29488369  T

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Target: chr2; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 320
Target Start/End: Original strand, 29505414 - 29505550
Alignment:
Q  184 agcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacttcatcaatatattgaacagcaattaaagattcacaaatgggt 283  Q
    |||||| ||||| || ||||||||||||||||| |||||||| |  ||||||||||| ||||||||||||| ||||  | |||  || |||||||||| |    
T  29505414 agcttgggatctttggtaaggatcagaaggcaaaaaaggagaatgatcattccaaacctcatcaatatattcaacaatatttagtgactcacaaatggat 29505513  T
Q  284 tttccattatgaataagaacagggattttcttctgaa 320  Q
    || |||||||| || ||||| || |||||||| ||||    
T  29505514 ttgccattatggattagaactggaattttcttgtgaa 29505550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 147 - 320
Target Start/End: Original strand, 30256547 - 30256720
Alignment:
Q  147 aaattaccttcttatcaatataatcagcccaaaataaagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacttcatc 246  Q
    |||||||||| || ||| |||| ||| ||||||||  |||||| | | ||| |||||| | ||||| ||  || | || ||| |||||||||||||||||    
T  30256547 aaattacctttttgtcactatactcaacccaaaatctagcttgagctttctcataagggtgagaagacatgaatgaagctttatcattccaaacttcatc 30256646  T
Q  247 aatatattgaacagcaattaaagattcacaaatgggttttccattatgaataagaacagggattttcttctgaa 320  Q
     || ||||| |||  ||||  |||||||||||||| |||||||||||| |||||||| || || ||||| ||||    
T  30256647 tatgtattgcacaataattgcagattcacaaatggattttccattatggataagaactggaatcttcttgtgaa 30256720  T

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Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 330
Target Start/End: Complemental strand, 29502706 - 29502540
Alignment:
Q  164 atataatcagcccaaaataaagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacttcatcaatatattgaacagcaa 263  Q
    |||||||||  |||||||  |||||| | ||||| ||| |||||||| ||||  || | || ||| ||||||||||||||||| || || || |||   |    
T  29502706 atataatcaaaccaaaatctagcttgagctctctcatacggatcagagggcatgaatgaagctttatcattccaaacttcatctatgtactgcacaatga 29502607  T
Q  264 ttaaagattcacaaatgggttttccattatgaataagaacagggattttcttctgaaccgggttcat 330  Q
    ||  |||||||||||||| |||||||||||| |||||||| || || ||||| ||||  ||||||||    
T  29502606 ttgcagattcacaaatggattttccattatggataagaactggaatcttcttgtgaattgggttcat 29502540  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 152 - 300
Target Start/End: Original strand, 51266291 - 51266439
Alignment:
Q  152 accttcttatcaatataatcagcccaaaataaagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacttcatcaatat 251  Q
    ||||| ||||||| | ||||||||||||||  |||||| | ||||||||  ||||| |  |||| ||| |||| ||  || ||||| || |||||||| |    
T  51266291 accttattatcaacaaaatcagcccaaaatctagcttgagctctctgatgtggatcggtgggcagcaatggagtttgatctttccagacctcatcaatgt 51266390  T
Q  252 attgaacagcaattaaagattcacaaatgggttttccattatgaataag 300  Q
    ||| ||||  ||| || |||||||||||||| || ||||||||||||||    
T  51266391 attcaacaataatcaaggattcacaaatgggcttcccattatgaataag 51266439  T

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Target: scaffold0186 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 330
Target Start/End: Original strand, 9161 - 9258
Alignment:
Q  233 ttccaaacttcatcaatatattgaacagcaattaaagattcacaaatgggttttccattatgaataagaacagggattttcttctgaaccgggttcat 330  Q
    |||||||| ||||||||||||| ||||  ||| |  || ||| |||| |||||||| ||||| ||||||||||| || ||||| ||||  ||||||||    
T  9161 ttccaaacctcatcaatatattcaacaataatgatggactcagaaattggttttcccttatggataagaacaggaatcttcttgtgaattgggttcat 9258  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 330
Target Start/End: Original strand, 18874658 - 18874755
Alignment:
Q  233 ttccaaacttcatcaatatattgaacagcaattaaagattcacaaatgggttttccattatgaataagaacagggattttcttctgaaccgggttcat 330  Q
    |||||||| ||||||||||||| ||||  ||| |  || ||| |||| |||||||| ||||| ||||||||||| || ||||| ||||  ||||||||    
T  18874658 ttccaaacctcatcaatatattcaacaataatgatggactcagaaattggttttcccttatggataagaacaggaatcttcttgtgaattgggttcat 18874755  T

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