View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19601_low_16 (Length: 339)
Name: NF19601_low_16
Description: NF19601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19601_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 6367113 - 6367422
Alignment:
| Q |
16 |
atcaaacaccgcaacaacatctatgtccacagtcaacaacaaacnnnnnnnnnnnnnnnnnnncttccttatactttattaggatggaaagaatgagttg |
115 |
Q |
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| T |
6367113 |
atcaaacaccgcaacaacatctacgtccacagtcaacaacaaactttttttgattttttttttcttccttatactttattaggatggaaagaatgagttg |
6367212 |
T |
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| Q |
116 |
catgtttatacactcacaaatttgtaattt-atctagtgtttgtaatattttttaattagtttaggtatttaattaaagtagttatattacnnnnnnnnn |
214 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6367213 |
catgtttatacactcacaaatttgtaatttaatctagtgtttgtaatattttttaattagtttaggtatttaattaaaatagttatattacttttttttt |
6367312 |
T |
|
| Q |
215 |
acaattacannnnnnngttaacgtggccaatcaaaacttgatgaattctaccttaattactattatttgttgtttaaacttgattaattcaaatattatt |
314 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6367313 |
acaattacatttttttgttaacgtggccaatcaaaacttgatgaattctaccttaattactattatttgttgtttaaacttgattaattcaaatattatt |
6367412 |
T |
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| Q |
315 |
tggtgtttat |
324 |
Q |
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|||||||||| |
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| T |
6367413 |
tggtgtttat |
6367422 |
T |
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