View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19601_low_17 (Length: 321)
Name: NF19601_low_17
Description: NF19601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19601_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 1600159 - 1599854
Alignment:
| Q |
1 |
atatgacccaaaatgaaagaataccagaaaagggttcatggtcggacacacccgagggtgtattttcgtcatgtgatggtgactcatacagagaagcaaa |
100 |
Q |
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| T |
1600159 |
atatgacccaaaatgaaagaataccagaaaagggttcatggtcggacacacccgagggtgtattttcgtcatgtgatggtgactcatacagagaagcaaa |
1600060 |
T |
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| Q |
101 |
agggccagcttcagataacacaggcatgtctgaccactgtttcaagagcagcaatatagattctggtggtagcgagctttgtgcagatgataccatcttg |
200 |
Q |
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| T |
1600059 |
agggccagcttcagataacacaggcatgtctgaccactgtttcaagagcagcaatatagattctggtggtagcgagctttgtgcagatgataccatcttg |
1599960 |
T |
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| Q |
201 |
gaagacaagtgtgtggtggaagatgatagtgcgtgtcaatatccagtaaatcacatatctcaagatgataatgaactcagttttcttgataatgatggat |
300 |
Q |
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| T |
1599959 |
gaagacaagtgtgtggtggaagatgatagtgcgtgtcaatatccagtaaatcacatatctcaagatgataatgaactcagttttcttgagaatgatggat |
1599860 |
T |
|
| Q |
301 |
ggttgg |
306 |
Q |
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|||||| |
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| T |
1599859 |
ggttgg |
1599854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 140 - 298
Target Start/End: Original strand, 37535026 - 37535184
Alignment:
| Q |
140 |
tttcaagagcagcaatatagattctggtggtagcgagctttgtgcagatgataccatcttggaagacaagtgtgtggtggaagatgatagtgcgtgtcaa |
239 |
Q |
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| T |
37535026 |
tttcaagagcagcaaaatagattcttgcagtagtgcgttttgtgcaaatgatactatcttgggagacaagtgtttggtggaggatgatagcgtatctcaa |
37535125 |
T |
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| Q |
240 |
tatccagtaaatcacatatctcaagatgataatgaactcagttttcttgataatgatgg |
298 |
Q |
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| T |
37535126 |
tattcaatcaatcacatatctcagactgacaatgaactcagctttcttgatactgatgg |
37535184 |
T |
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