View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19601_low_20 (Length: 261)
Name: NF19601_low_20
Description: NF19601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19601_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 38052279 - 38052512
Alignment:
| Q |
18 |
atgcatttactttatgacttgcaagatactactttaggttctcttctttcagctctaatgcaacactgtgtgccaccacaaagaagattccctcttgaaa |
117 |
Q |
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| T |
38052279 |
atgcatttactttatgacttgcaagatactactttaggttctcttctttcagctctaatgcaacactgtgtaccaccacaaagaagattccctcttgaaa |
38052378 |
T |
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| Q |
118 |
taggtttggctcctccatggtggcctaatggaacagaacagtggtggggtcaacaaggtggtttgtcagaacaacatggcccaccaccttataaaaaacc |
217 |
Q |
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| T |
38052379 |
taggtttggctcctccatggtggcctaatggaacagaacagtggtggggtcaacaaggtggtttgtcagaacaacatggcccaccaccttataaaaaacc |
38052478 |
T |
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| Q |
218 |
tcatgatttgaaaaaggcttggaaagtttctgtg |
251 |
Q |
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| T |
38052479 |
tcatgatttgaaaaaggcttggaaagtttctgtg |
38052512 |
T |
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Back To:
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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 250
Target Start/End: Original strand, 39679769 - 39679965
Alignment:
| Q |
54 |
ggttctcttctttcagctctaatgcaacactgtgtgccaccacaaagaagattccctcttgaaataggtttggctcctccatggtggcctaatggaacag |
153 |
Q |
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| T |
39679769 |
ggttcgcttctttctgctttaatgcaacattgtgtgccaccacagaggaggtttccactcgagaggggaatttctcctccctggtggcccacaggatcag |
39679868 |
T |
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| Q |
154 |
aacagtggtggggtcaacaaggtggtttgtcagaacaacatggcccaccaccttataaaaaacctcatgatttgaaaaaggcttggaaagtttctgt |
250 |
Q |
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| T |
39679869 |
aaaattggtggggtgaacaaggtttgttggcccaagaacaaggcccaccaccttataagaaaccacatgaccttaaaaaggcatggaaagtttctgt |
39679965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 41239896 - 41239942
Alignment:
| Q |
205 |
cttataaaaaacctcatgatttgaaaaaggcttggaaagtttctgtg |
251 |
Q |
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| T |
41239896 |
cttataaaagaccttatgatttgaaaaaggcttggaaagtttctgtg |
41239942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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