View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19601_low_24 (Length: 245)
Name: NF19601_low_24
Description: NF19601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19601_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 44474271 - 44474487
Alignment:
| Q |
11 |
ccgtcatggtaatggcacccaaacttggaaggatggaactatctacattggaaattggaaaaaagatctaccagatggaagagggattgtcagttgggat |
110 |
Q |
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| T |
44474271 |
ccgtcatggtaatggcaccctaactttgaaggatggaactatctacattggaaattggaaaaaagatacaccagatggaagagggattttcacttgggct |
44474370 |
T |
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| Q |
111 |
attggcgatgtttttattggttctcggttaactggcattgtacatggatttggagtttttatatctctaggtgggaatgtctatactggaaattggaaaa |
210 |
Q |
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| T |
44474371 |
attggcgatgtttttattggttcttggtcaaatggccttgtacatggatttggagtttttacatctctagatggggatgtctacgctggaaattggaaaa |
44474470 |
T |
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| Q |
211 |
caggtaaattggatgga |
227 |
Q |
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|||| |||||||||||| |
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| T |
44474471 |
cagggaaattggatgga |
44474487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 38454074 - 38453853
Alignment:
| Q |
6 |
gattgccgtcatggtaatggcacccaaacttggaaggatggaactatctacattggaaattggaaaaaagatctaccagatggaagagggattgtcagtt |
105 |
Q |
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| T |
38454074 |
gattgccgtcatggtaatggcacccaaacttggaaggatggaggtatctacactggaaattggaaaaaagataaaagagatggaagagggactatgagtt |
38453975 |
T |
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| Q |
106 |
gggatattggcgatgtttttattggttctcggttaactggcattgtacatggatttggagtttttatatctctaggtgggaatgtctatactggaaattg |
205 |
Q |
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| T |
38453974 |
ggcctgatggtgatgtttttgatggttgttggtcaaatagacttgtacatggatatggagtttatagatctgtaaatggggatgttaacactggaaattg |
38453875 |
T |
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| Q |
206 |
gaaaacaggtaaattggatgga |
227 |
Q |
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|||| |||| | |||||||||| |
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| T |
38453874 |
gaaagcagggagattggatgga |
38453853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 171
Target Start/End: Original strand, 39848164 - 39848325
Alignment:
| Q |
10 |
gccgtcatggtaatggcacccaaacttggaaggatggaactatctacattggaaattggaaaaaagatctaccagatggaagagggattgtcagttggga |
109 |
Q |
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|||||||||| |||||||||||||||| ||| ||||| || |||| |||||||||||||||| ||| | ||||||||||||||||| | || || |
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| T |
39848164 |
gccgtcatggcaatggcacccaaacttataagaatggaggtagctacgttggaaattggaaaaatgataaaaaagatggaagagggattgagactttggc |
39848263 |
T |
|
| Q |
110 |
tattggcgatgtttttattggttctcggttaactggcattgtacatggatttggagttttta |
171 |
Q |
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| T |
39848264 |
taatggtgatgtttttaatggttgttggtcaaatgactttgtatatggatatggagttttta |
39848325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 36951394 - 36951436
Alignment:
| Q |
33 |
acttggaaggatggaactatctacattggaaattggaaaaaag |
75 |
Q |
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| T |
36951394 |
acttggaatgatggaagtatctatattggaaattggaaaaaag |
36951436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 7046268 - 7046154
Alignment:
| Q |
11 |
ccgtcatggtaatggcacccaaacttggaaggatggaactatctacattggaaattggaaaaaagatctaccagatggaagagggattgtcagttgggat |
110 |
Q |
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|||||||||||| |||||||| |||||||| ||||||| | |||| |||||||||||||||||||| | ||||||| ||||||||| ||||||| | |
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| T |
7046268 |
ccgtcatggtaagggcacccagacttggaaagatggaaatgactacgttggaaattggaaaaaagataaaatggatggaaaagggattgtgagttgggct |
7046169 |
T |
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| Q |
111 |
attggcgatgttttt |
125 |
Q |
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| ||| ||| ||||| |
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| T |
7046168 |
aatggtgattttttt |
7046154 |
T |
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