View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19601_low_25 (Length: 243)
Name: NF19601_low_25
Description: NF19601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19601_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 37119292 - 37119503
Alignment:
| Q |
16 |
atacacacaatgagatttacttggttcctttttgtagttaccccacttgaataatatctccttactagaagtgccaatgccacaagtgaaaagataaaca |
115 |
Q |
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| T |
37119292 |
atacacacaatgagatttacttggttcctttttgtagttaccccacttgaataatatctccttactagaagtgccaatgccacaagtgaaaagataaaca |
37119391 |
T |
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| Q |
116 |
aagtagaaatcgacaaaaggctagatagaatactaagattggtgaagaaagcaacgatagcagtagcaataagcattgagatcgtagcattcataggtgt |
215 |
Q |
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| T |
37119392 |
aagtagaaatcgacaaaaggctagatagaatactaagattggtgaagaaagcaacgatagcagtagcaataagcattgagatcgtagcattcataggtgt |
37119491 |
T |
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| Q |
216 |
tcctgttctttc |
227 |
Q |
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|||||||||||| |
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| T |
37119492 |
tcctgttctttc |
37119503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 37111039 - 37111248
Alignment:
| Q |
18 |
acacacaatgagatttacttggttcctttttgtagttaccccacttgaataatatctccttactagaagtgccaatgccacaagtgaaaagataaacaaa |
117 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
37111039 |
acacacaatgagatttacttggttcccttttgtagttacctcacttgaataatatctcctcactagaagtgccaatgccacaagcgaaaagataaacaaa |
37111138 |
T |
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| Q |
118 |
gtagaaatcgacaaaaggctagatagaatactaagattggtgaagaaagcaacgatagcagtagcaataagcattgagatcgtagcattcataggtgttc |
217 |
Q |
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|||| ||||||||| ||| | |||||||| | ||||| ||| |||||||||||||||||||| || |||||||||||| ||||||||||||||||||| |
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| T |
37111139 |
gtagcaatcgacaagaggttcgatagaatcccaagatcggtaaagaaagcaacgatagcagtcgctgcaagcattgagattgtagcattcataggtgttc |
37111238 |
T |
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| Q |
218 |
ctgttctttc |
227 |
Q |
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| T |
37111239 |
ctgttctttc |
37111248 |
T |
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Back To:
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