View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19601_low_4 (Length: 436)
Name: NF19601_low_4
Description: NF19601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19601_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 19 - 436
Target Start/End: Original strand, 8742700 - 8743117
Alignment:
| Q |
19 |
ctttggtgtaaccaaactcctaatcctcaaccttgtgtgtatttcttgtgcaataaccctacttataaacacaaactcatcaaacaaaaagttgatttct |
118 |
Q |
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| T |
8742700 |
ctttggtgtaaccaaacacctaatcctcaaccttgtgtgtatttcttgagcaataacccttcttataaacacaaactcatcaaacaaaaagttgatttct |
8742799 |
T |
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| Q |
119 |
tcaaactttcattggaacttgttcaagaaagagcactcaaaggccatgcaaaaactctttcattaggctccaaatgtagcaactcacgtgaaaaatcagc |
218 |
Q |
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| T |
8742800 |
tcaaactttcattggaacttgttcaagaaagagcacttaaaggccatgcaaaaactctttcattaggctccaaatgtagtaactcacgtgaaaaatcagc |
8742899 |
T |
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| Q |
219 |
ttgggctgattgtgttgagctatatgaacaaaccatccttaagctcaacaaaaccctaaaccctaaaacaaagtgttctcaagttgatgctcaaacatgg |
318 |
Q |
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| T |
8742900 |
ttgggctgattgtgttgagctatatgaacaaaccatccttaagctcaacaaaaccctaaaccctaaaacaaagtgttctcaagttgatgctcaaacatgg |
8742999 |
T |
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| Q |
319 |
ctaagcactgctctcaccaaccttgagacatgtaaagctggattctacgatctcggtgttcaagattatattcttcctctcatgtccaacaatgttacta |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8743000 |
ctaagcactgctctcaccaaccttgagacatgtaaagctggattctacgatcttggtgttcaagattatattcttcctctcatgtccaacaatgttacta |
8743099 |
T |
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| Q |
419 |
aattgctaagtaacactt |
436 |
Q |
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| T |
8743100 |
aattgctaagtaacactt |
8743117 |
T |
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