View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19601_low_5 (Length: 422)
Name: NF19601_low_5
Description: NF19601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19601_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 12 - 340
Target Start/End: Complemental strand, 12171428 - 12171101
Alignment:
| Q |
12 |
atggacatcatcggaaagaatcaccagtgaaaacaagaactcacatttattggagtgccagag--gtaagaaatgctaatttccccaagaaaatgttcct |
109 |
Q |
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| T |
12171428 |
atggacatcataggaaataatcaccagtgaaaataagaactcacatttattggagtgccagagaggtaagaaatgctaatttccccaagaaaaagttcct |
12171329 |
T |
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| Q |
110 |
tgtcctcggtaactacagttccagcacaagcagttgacagaacttcaaccaaggaaccaaccgcgcctccatgcagtgttccataggcattctgcatttc |
209 |
Q |
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| T |
12171328 |
tgtcctcagcaactacagttctagcacaagcagttgacagaacttcaactaaggacccaacagcgcctccatgcagtgttccataggcattctgcaattc |
12171229 |
T |
|
| Q |
210 |
cgacaaagaaaatgagaagaatacagtctccacacaatcacatgacaatattaattta-tatacactc--ttttcagagaaatttttaactttgaactaa |
306 |
Q |
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| T |
12171228 |
cgacaaagaaaatgagaaaattccagtctcca---aat-acattac-attttaagttattatacactcaattttcagacaaatttttaactttgaaccaa |
12171134 |
T |
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| Q |
307 |
gaaaagtaacaagattcacttagactgagctgga |
340 |
Q |
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| T |
12171133 |
gaaaagtagc-agattcacttagcctgagctgga |
12171101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 12 - 340
Target Start/End: Complemental strand, 12415856 - 12415529
Alignment:
| Q |
12 |
atggacatcatcggaaagaatcaccagtgaaaacaagaactcacatttattggagtgccagag--gtaagaaatgctaatttccccaagaaaatgttcct |
109 |
Q |
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||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
12415856 |
atggacatcataggaaataatcaccagtgaaaataagaactcacatttattggagtgccagagaggtaagaaatgctaatttccccaagaaaaagttcct |
12415757 |
T |
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| Q |
110 |
tgtcctcggtaactacagttccagcacaagcagttgacagaacttcaaccaaggaaccaaccgcgcctccatgcagtgttccataggcattctgcatttc |
209 |
Q |
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| T |
12415756 |
tgtcctcagcaactacagttctagcacaagcagttgacagaacttcaactaaggacccaacagcgcctccatgcagtgttccataggcattctgcaattc |
12415657 |
T |
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| Q |
210 |
cgacaaagaaaatgagaagaatacagtctccacacaatcacatgacaatattaattta-tatacactc--ttttcagagaaatttttaactttgaactaa |
306 |
Q |
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| T |
12415656 |
cgacaaagaaaatgagaaaattccagtctcca---aat-acattac-attttaagttattatacactcaattttcagacaaatttttaactttgaaccaa |
12415562 |
T |
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| Q |
307 |
gaaaagtaacaagattcacttagactgagctgga |
340 |
Q |
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|||||||| | |||||||||||| |||||||||| |
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| T |
12415561 |
gaaaagtagc-agattcacttagcctgagctgga |
12415529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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