View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19601_low_7 (Length: 404)

Name: NF19601_low_7
Description: NF19601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19601_low_7
NF19601_low_7
[»] chr4 (8 HSPs)
chr4 (1-388)||(27517605-27517992)
chr4 (65-388)||(37918657-37918980)
chr4 (2-388)||(33832726-33833122)
chr4 (161-361)||(27465468-27465669)
chr4 (65-182)||(50960690-50960807)
chr4 (161-372)||(27472535-27472749)
chr4 (65-191)||(46595742-46595868)
chr4 (65-191)||(22504688-22504814)
[»] chr8 (2 HSPs)
chr8 (148-376)||(36998938-36999166)
chr8 (64-191)||(43734928-43735055)
[»] chr7 (2 HSPs)
chr7 (65-191)||(44265331-44265457)
chr7 (70-191)||(7927237-7927358)
[»] chr2 (2 HSPs)
chr2 (65-191)||(38504245-38504371)
chr2 (65-164)||(34770292-34770391)
[»] chr6 (1 HSPs)
chr6 (2-39)||(13327165-13327202)


Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 27517605 - 27517992
Alignment:
Q  1 acagtctagttgtccgcacacaccacatcaaaatggtgtttccaagtggaaacatcatcatctactcgtaccttattgattaatgctcatgcactttgaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27517605 acagtctagttgtccgcacacaccacatcaaaatggtgtttccaagtggaaacatcgtcatctactcgtaccttattgattaatgctcatgcactttgaa 27517704  T
Q  101 aacattgaggtgatgttgttctcacaacatcttatttgatcaagtgtatgccattctcggtattggataatgagattccacattctctcttgttttataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27517705 aacattgaggtgatgttgttctcacaacatcttatttgatcaagtgtatgccattctcggtattggataatgagattccacattctctcttgttttataa 27517804  T
Q  201 gcccccgctgtattttgtacttttacgagtgtttggatccacttctgttgttcatgttctatctcctggctgtgaaaaattgtttacaggagatatcaag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27517805 gcccccgctgtattttgtacttttacgagtgtttggatccacttctcttgttcatgttctatctcctggctgtgaaaaattgtttacaggagatatcaag 27517904  T
Q  301 tgtgtgtttcaggggtactgcagagtttaaaagggggatcaatgttattgtccatttacacgtcatttttatgtttcgacagatgtta 388  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27517905 tgtgtgtttcaggggtactgcagagttcaaaagggggatcaatgttattgtctatttacacgtcatttttatgtttcgacagatgtta 27517992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 65 - 388
Target Start/End: Complemental strand, 37918980 - 37918657
Alignment:
Q  65 ctcgtaccttattgattaatgctcatgcactttgaaaacattgaggtgatgttgttctcacaacatcttatttgatcaagtgtatgccattctcggtatt 164  Q
    |||| ||||||||||| ||||||||||||| || ||||  ||| |||||||  ||||| ||| | | ||||||||||||    |||||||  || || ||    
T  37918980 ctcgaaccttattgatcaatgctcatgcacctttaaaattttggggtgatgcggttctgacagcctgttatttgatcaaccacatgccatcatcagtttt 37918881  T
Q  165 ggataatgagattccacattctctcttgttttataagcccccgctgtattttgtacttttacgagtgtttggatccacttctgttgttcatgttctatct 264  Q
    |||||||||||||||||||||||||||||||  ||||  |||  |||||||||| |   | || || ||||| || |||| | || |||||| ||| |||    
T  37918880 ggataatgagattccacattctctcttgtttcctaaggaccccttgtattttgtcccacttcgggtttttggctctacttgttttattcatgatctttct 37918781  T
Q  265 cctggctgtgaaaaattgtttacaggagatatcaagtgtgtgtttcaggggtactgcagagtttaaaagggggatcaatgttattgtccatttacacgtc 364  Q
    |||||  |||| || |||| | || | | | ||||||| ||||||  |||||||| || |||| |||| ||| |||  ||||||||||||| ||||| ||    
T  37918780 cctggtcgtgataagttgtctccatgggctgtcaagtgcgtgtttttggggtactccaaagttcaaaaagggtatcggtgttattgtccatctacacatc 37918681  T
Q  365 atttttatgtttcgacagatgtta 388  Q
     ||||||||| ||  |||||||||    
T  37918680 gtttttatgtctctgcagatgtta 37918657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 2 - 388
Target Start/End: Original strand, 33832726 - 33833122
Alignment:
Q  2 cagtctagttgtccgcacacaccacatcaaaatggtgtttccaagtggaaacatcatcatcta----------ctcgtaccttattgattaatgctcatg 91  Q
    ||||||||||||||||||||||| || ||||||||| |  |  || ||||||||| |||||||          |||| ||||||||||| ||||||||||    
T  33832726 cagtctagttgtccgcacacaccgcaacaaaatggtttagctgagcggaaacatcgtcatctagttgatacagctcgaaccttattgatcaatgctcatg 33832825  T
Q  92 cactttgaaaacattgaggtgatgttgttctcacaacatcttatttgatcaagtgtatgccattctcggtattggataatgagattccacattctctctt 191  Q
    ||| || ||||  ||| |||||||  ||||| ||| | | ||||||||||||  | |||||||  || || |||||||| ||||||||||||||||||||    
T  33832826 cacctttaaaattttggggtgatgcggttctgacagcctgttatttgatcaaccgcatgccatcatcagttttggataacgagattccacattctctctt 33832925  T
Q  192 gttttataagcccccgctgtattttgtacttttacgagtgtttggatccacttctgttgttcatgttctatctcctggctgtgaaaaattgtttacagga 291  Q
    ||||  ||||  |||  |||||| ||| |   | || || ||||| || |||| | ||||||||| ||| ||||||||  |||| || |||| | || |     
T  33832926 gtttcctaaggaccccttgtattctgtcccacttcgggtttttggctctacttgttttgttcatgatctttctcctggtcgtgataagttgtctccacgg 33833025  T
Q  292 gatatcaagtgtgtgtttcaggggtactgcagagtttaaaagggggatcaatgttattgtccatttacacgtcatttttatgtttcgacagatgtta 388  Q
    | | ||||||| ||||||  |||||||| || |||| | || ||| |||  ||||||||||||| ||||| || ||||||||| ||  |||||||||    
T  33833026 gctgtcaagtgcgtgtttttggggtactccaaagttcataaagggcatcggtgttattgtccatctacacatcgtttttatgtctctgcagatgtta 33833122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 161 - 361
Target Start/End: Complemental strand, 27465669 - 27465468
Alignment:
Q  161 tattggataatgagattccacattctctcttgttttataagcccccgctgtattttgtacttttacgagtgtttggatccacttctgttgttcatgttct 260  Q
    |||||||||||| ||||||||||| || ||||||| |||||  ||  || |||||||| | | | ||||||||||||||||||| | ||||||||| |||    
T  27465669 tattggataatgtgattccacatt-tcacttgtttcataaggacctcctttattttgttcctattcgagtgtttggatccacttattttgttcatgatct 27465571  T
Q  261 atctcctggctgtgaaaaattgtttacaggagatatcaagtgtgtgt--ttcaggggtactgcagagtttaaaagggggatcaatgttattgtccattta 358  Q
    |||||||||  | |||| |||||   ||     ||||||||||||||  ||| |||||| | ||||||||||| |||| |||||||||||||||||| ||    
T  27465570 atctcctggtcgcgaaagattgtcggcacagtttatcaagtgtgtgtgcttccggggtagttcagagtttaaagggggtatcaatgttattgtccatcta 27465471  T
Q  359 cac 361  Q
    |||    
T  27465470 cac 27465468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 182
Target Start/End: Original strand, 50960690 - 50960807
Alignment:
Q  65 ctcgtaccttattgattaatgctcatgcactttgaaaacattgaggtgatgttgttctcacaacatcttatttgatcaagtgtatgccattctcggtatt 164  Q
    |||| ||||||||||| ||||| ||||||| ||  |||| ||| ||||||| | |||||||  | | ||||||||| ||  ||||||||| ||| |||||    
T  50960690 ctcgaaccttattgatcaatgcccatgcacgttttaaactttggggtgatgctattctcactgcttgttatttgataaaccgtatgccatcctcagtatt 50960789  T
Q  165 ggataatgagattccaca 182  Q
    ||||||||||||||||||    
T  50960790 ggataatgagattccaca 50960807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 161 - 372
Target Start/End: Complemental strand, 27472749 - 27472535
Alignment:
Q  161 tattggataatgagattccacattctctcttgttttataagcccccgctgtattttgtacttttacgagtgtttggatccacttctgttgttcatgttct 260  Q
    |||||||||||| ||||| ||||| |||||||||| |||||  ||  ||||||||||| | | | ||||||||||||||||| | | ||||||||| |||    
T  27472749 tattggataatgtgattcgacatt-tctcttgtttcataaggacctcctgtattttgttcctattcgagtgtttggatccacatattttgttcatgatct 27472651  T
Q  261 atctcctggctgtgaaaaattgtttacaggagatatca----agtgtgtgtttcaggggtactgcagagtttaaaagggggatcaatgttattgtccatt 356  Q
    | | |||||| | |||| ||||| | || |   |||||    |||| ||||||  |||||| | ||||||| ||| |||| |||||||||||| |||||     
T  27472650 accacctggccgcgaaagattgtatgcacggtctatcaagcgagtgcgtgttttcggggtagtccagagttcaaagggggtatcaatgttattttccatc 27472551  T
Q  357 tacacgtcatttttat 372  Q
    ||||| || |||||||    
T  27472550 tacacatcctttttat 27472535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 65 - 191
Target Start/End: Complemental strand, 46595868 - 46595742
Alignment:
Q  65 ctcgtaccttattgattaatgctcatgcactttgaaaacattgaggtgatgttgttctcacaacatcttatttgatcaagtgtatgccattctcggtatt 164  Q
    |||| ||||||||||| ||||||||||||| ||  |||  ||| ||||||| | |||||||    | ||||||||| ||  ||||||||| ||| |||||    
T  46595868 ctcgaaccttattgatcaatgctcatgcaccttttaaattttggggtgatgctattctcactgattgttatttgataaaccgtatgccatcctcagtatt 46595769  T
Q  165 ggataatgagattccacattctctctt 191  Q
    |||||||||||||||||| || |||||    
T  46595768 ggataatgagattccacactcactctt 46595742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 191
Target Start/End: Complemental strand, 22504814 - 22504688
Alignment:
Q  65 ctcgtaccttattgattaatgctcatgcactttgaaaacattgaggtgatgttgttctcacaacatcttatttgatcaagtgtatgccattctcggtatt 164  Q
    |||| ||||||||||| ||||||||||||| ||  |||  ||| ||||||| | |||||||    | ||||||||| ||   |||||||| ||| |||||    
T  22504814 ctcgaaccttattgatcaatgctcatgcaccttttaaattttggggtgatgctattctcactttttgttatttgataaaccttatgccatcctcagtatt 22504715  T
Q  165 ggataatgagattccacattctctctt 191  Q
    |||||||||||||||||| || |||||    
T  22504714 ggataatgagattccacactcactctt 22504688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 148 - 376
Target Start/End: Original strand, 36998938 - 36999166
Alignment:
Q  148 atgccattctcggtattggataatgagattccacattctctcttgttttataagcccccgctgtattttgtacttttacgagtgtttggatccacttctg 247  Q
    |||||||  ||||| ||||||||||||||||| |||||||||||||||  ||||  |||  |||||| ||| |   | ||||| ||||| ||  ||| |     
T  36998938 atgccatcatcggtcttggataatgagattcctcattctctcttgtttcctaaggaccccttgtattctgtcccacttcgagtttttggctctgcttgtt 36999037  T
Q  248 ttgttcatgttctatctcctggctgtgaaaaattgtttacaggagatatcaagtgtgtgtttcaggggtactgcagagtttaaaagggggatcaatgtta 347  Q
    ||||||||| ||| ||||||||  |||| ||||||| | || | | | ||||||||||||||  |||||||| ||||||| |||| ||| | |  |||||    
T  36999038 ttgttcatgatctttctcctggtcgtgataaattgtctccacgggctgtcaagtgtgtgttttgggggtactccagagttcaaaaagggtaccggtgtta 36999137  T
Q  348 ttgtccatttacacgtcatttttatgttt 376  Q
    |||||||| ||||| || |||||||||||    
T  36999138 ttgtccatctacacatcgtttttatgttt 36999166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 191
Target Start/End: Original strand, 43734928 - 43735055
Alignment:
Q  64 actcgtaccttattgattaatgctcatgcactttgaaaacattgaggtgatgttgttctcacaacatcttatttgatcaagtgtatgccattctcggtat 163  Q
    ||||| ||||||||||| ||||||||||||| ||  |||  ||| ||||||| | |||||||  | | ||||||||| ||  ||||||||| ||| ||||    
T  43734928 actcgaaccttattgatcaatgctcatgcaccttttaaattttggggtgatgctattctcactgcttgttatttgataaaccgtatgccatcctcagtat 43735027  T
Q  164 tggataatgagattccacattctctctt 191  Q
    ||||||||||||||||||| || |||||    
T  43735028 tggataatgagattccacaatcactctt 43735055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 191
Target Start/End: Complemental strand, 44265457 - 44265331
Alignment:
Q  65 ctcgtaccttattgattaatgctcatgcactttgaaaacattgaggtgatgttgttctcacaacatcttatttgatcaagtgtatgccattctcggtatt 164  Q
    |||| ||||||||||| ||||||||||||| ||  |||  ||| ||||||| | |||||||  | | ||||||||| ||  ||||||||| ||| |||||    
T  44265457 ctcgaaccttattgatcaatgctcatgcaccttttaaattttggggtgatgctattctcactgcttgttatttgataaaccgtatgccatcctcagtatt 44265358  T
Q  165 ggataatgagattccacattctctctt 191  Q
    |||||||||||||||||| || |||||    
T  44265357 ggataatgagattccacactcactctt 44265331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 191
Target Start/End: Original strand, 7927237 - 7927358
Alignment:
Q  70 accttattgattaatgctcatgcactttgaaaacattgaggtgatgttgttctcacaacatcttatttgatcaagtgtatgccattctcggtattggata 169  Q
    ||||||||||| ||||||||||||| ||  |||  ||| ||||||| | |||||||  | | ||||||||| ||  ||||| ||| ||| ||||||||||    
T  7927237 accttattgatcaatgctcatgcaccttttaaattttggggtgatgctattctcactgcttgttatttgataaaccgtatgacatcctcagtattggata 7927336  T
Q  170 atgagattccacattctctctt 191  Q
    ||||||||||||| || |||||    
T  7927337 atgagattccacactcactctt 7927358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 191
Target Start/End: Original strand, 38504245 - 38504371
Alignment:
Q  65 ctcgtaccttattgattaatgctcatgcactttgaaaacattgaggtgatgttgttctcacaacatcttatttgatcaagtgtatgccattctcggtatt 164  Q
    |||| ||||||||||| ||||||||||||| ||  |||  ||| ||||||| | |||||||  | | ||||||||| ||  ||||||||| ||| |||||    
T  38504245 ctcgaaccttattgatcaatgctcatgcaccttttaaattttggggtgatgctattctcactgcttgttatttgataaaccgtatgccatcctcagtatt 38504344  T
Q  165 ggataatgagattccacattctctctt 191  Q
    |||||||||||||||||| || |||||    
T  38504345 ggataatgagattccacactcactctt 38504371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 65 - 164
Target Start/End: Complemental strand, 34770391 - 34770292
Alignment:
Q  65 ctcgtaccttattgattaatgctcatgcactttgaaaacattgaggtgatgttgttctcacaacatcttatttgatcaagtgtatgccattctcggtatt 164  Q
    |||| ||||||||||| ||||||||||||| ||  |||  ||| ||||||| | |||||||  | | ||||||||| || |||||||||| |||||||||    
T  34770391 ctcgaaccttattgatcaatgctcatgcaccttttaaattttggggtgatgctattctcactgcttgttatttgataaactgtatgccatcctcggtatt 34770292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 13327202 - 13327165
Alignment:
Q  2 cagtctagttgtccgcacacaccacatcaaaatggtgt 39  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  13327202 cagtctagttgtccacacacaccacaacaaaatggtgt 13327165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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