View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19601_low_8 (Length: 391)
Name: NF19601_low_8
Description: NF19601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19601_low_8 |
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| [»] scaffold0325 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 15 - 353
Target Start/End: Complemental strand, 10237324 - 10236985
Alignment:
| Q |
15 |
aataatcaaacagacgatcaacctcaacctgctaaaccgtcatctttgctgaagaaaatagctgtgaagttatgctttaaatcctaagtaatttggtatt |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||| |
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| T |
10237324 |
aataatcaaacagacgatcaacctcaacctgctaaaccgtcatctttgctgaagaaaatggttgtgaagttatgctttaaatcctaagtaattaggtatt |
10237225 |
T |
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| Q |
115 |
tttgcatatttatgacttataaattgtgagtttgtttttctaattactcttaacatgg--gtattatatattgatgagacctaatgttcagttttatcca |
212 |
Q |
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| T |
10237224 |
tttgcatatttatgacttagaaattgtgagtttgtttttctaattactcttaacatgggtgtattatatattgatgagacctaatgttcagttttatcca |
10237125 |
T |
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| Q |
213 |
tgttacgagttactcctgataacaatatagacaatcagttataaaaataactacggctaggatttcaataagattaacaatagcattaacattacaaaag |
312 |
Q |
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| T |
10237124 |
tgttacgagttactccttataacaatatagacaatcagttataaaaataactacggctaggatttcaataagattaacaatagcattaacattacaaaa- |
10237026 |
T |
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| Q |
313 |
gttgaaagagaatatatataatttaatggactcttctaaca |
353 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |
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| T |
10237025 |
gttgcaagagaatatatataatttaatggactcttctaaca |
10236985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 141
Target Start/End: Original strand, 10247149 - 10247251
Alignment:
| Q |
39 |
caacctgctaaaccgtcatctttgctgaagaaaatagctgtgaagttatgctttaaatcctaagtaatttggtatttttgcatatttatgacttataaat |
138 |
Q |
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| T |
10247149 |
caacctgctcaacgatcttcttttatgaagaaaattgctgagaagttatgcttagcatcctaagtaattttgtactattgcatatttttaacttataaat |
10247248 |
T |
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| Q |
139 |
tgt |
141 |
Q |
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||| |
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| T |
10247249 |
tgt |
10247251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 330
Target Start/End: Complemental strand, 26403579 - 26403520
Alignment:
| Q |
269 |
ctaggatttcaataagattaacaatagcattaacattacaaaaggttgaaagagaatatata |
330 |
Q |
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| T |
26403579 |
ctaggatttcaata-gaataacaatagcat-aacattacaaaaagttataagagaatatata |
26403520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0325 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0325
Description:
Target: scaffold0325; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 232 - 333
Target Start/End: Original strand, 14467 - 14567
Alignment:
| Q |
232 |
taacaatatagacaatcagttataaaaataactacggctaggatttcaataagattaacaatagcattaacattacaaaaggttgaaagagaatatatat |
331 |
Q |
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|||||||||||| ||||| |||||||||| ||||||||| |||||||| |||||||||||| |||| | ||||||||||| |||||||||||||| |
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| T |
14467 |
taacaatatagaaaatcaaagataaaaataatgacggctagggtttcaatattattaacaatagc-ttaatactacaaaaggttataagagaatatatat |
14565 |
T |
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| Q |
332 |
aa |
333 |
Q |
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|| |
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| T |
14566 |
aa |
14567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 333
Target Start/End: Original strand, 28062983 - 28063049
Alignment:
| Q |
265 |
acggctaggatttcaataagattaacaatagcattaacattacaaaaggttgaaagagaatatatataa |
333 |
Q |
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| T |
28062983 |
acggctagggtttca-tatgattaacaatagc-ttaacattacaaaaggttactagagaatatatataa |
28063049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 346
Target Start/End: Complemental strand, 8987063 - 8986981
Alignment:
| Q |
265 |
acggctaggatttcaataagattaacaatagcattaacattacaaaaggttgaaagagaatat---atataatttaatggactct |
346 |
Q |
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| T |
8987063 |
acggctacgatttcatta-gactaacaatagc-ttaacattacaaaaggttataagagaatatataataaaatttaatggactct |
8986981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 330
Target Start/End: Complemental strand, 8985710 - 8985647
Alignment:
| Q |
265 |
acggctaggatttcaataagattaacaatagcattaacattacaaaaggttgaaagagaatatata |
330 |
Q |
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| T |
8985710 |
acggctacgatttcatta-gactaacaatagc-ttaacattacaaaaggttataagagaatatata |
8985647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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