View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19601_low_9 (Length: 376)
Name: NF19601_low_9
Description: NF19601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19601_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 13 - 360
Target Start/End: Complemental strand, 46174931 - 46174584
Alignment:
| Q |
13 |
gagaggaatgtgacggtggtggtgaagaggtggagggggtgtggaaagcaaagagcgatagagggtggatgttcttgagattgagaattttgccattaca |
112 |
Q |
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| T |
46174931 |
gagaggaatgtgacggtggtggtgaagaggtggagggggtgtggaaagcaaagagcgatagagggtggatgttcttgagattgagaattttgccattcca |
46174832 |
T |
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| Q |
113 |
attgatttctgcattctgcgcttaaaccctacacaactgttttcacttgactaaacccttgtgttctacatgaaaatgaaaaagtcttgaggagaaaatc |
212 |
Q |
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| T |
46174831 |
attgatttctgcattctgcgcttaaaccctacacaactgttttcacttgacaaaacccttgtgttgtacatgaaaatgaaaaagtcttgaggagaaaatc |
46174732 |
T |
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| Q |
213 |
ataaataattacagtttttactatttttatgttaattcatctgttgacgtcattcaaatggaatacatttttcttttgagaaataaaaaacaacaaaaat |
312 |
Q |
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| T |
46174731 |
ataaataattacagtttttactatttttatgttaattcatctgttgacgtcattcaaatggaatacatttttcttttgagaaataaaaaacaacaaaaat |
46174632 |
T |
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| Q |
313 |
tatcaacaatagattaattcaaataataaggaatttaaagttggattc |
360 |
Q |
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| T |
46174631 |
tatcaacaatagattaattcaaataataaggaatttaaagttggattc |
46174584 |
T |
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