View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19602_high_15 (Length: 397)

Name: NF19602_high_15
Description: NF19602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19602_high_15
NF19602_high_15
[»] chr6 (25 HSPs)
chr6 (143-377)||(5433658-5433884)
chr6 (244-370)||(5176455-5176581)
chr6 (244-370)||(5278282-5278408)
chr6 (267-377)||(5128649-5128759)
chr6 (223-377)||(5690391-5690544)
chr6 (268-377)||(5066926-5067035)
chr6 (266-383)||(5147122-5147239)
chr6 (266-373)||(5284625-5284732)
chr6 (268-377)||(5102846-5102955)
chr6 (252-377)||(5354846-5354971)
chr6 (266-374)||(5396688-5396796)
chr6 (268-377)||(5182159-5182268)
chr6 (268-376)||(5096448-5096556)
chr6 (266-377)||(5257566-5257677)
chr6 (266-377)||(5344599-5344710)
chr6 (266-377)||(5383064-5383175)
chr6 (268-377)||(5370311-5370420)
chr6 (276-377)||(5074140-5074241)
chr6 (268-377)||(5157860-5157969)
chr6 (268-377)||(5446897-5447006)
chr6 (268-377)||(5447327-5447436)
chr6 (280-377)||(5350148-5350243)
chr6 (268-370)||(5425650-5425752)
chr6 (268-377)||(5244099-5244208)
chr6 (1-37)||(5444507-5444543)
[»] chr5 (1 HSPs)
chr5 (266-377)||(8877347-8877458)
[»] chr4 (7 HSPs)
chr4 (268-377)||(4124171-4124280)
chr4 (269-377)||(4344387-4344495)
chr4 (270-377)||(4335087-4335194)
chr4 (266-376)||(4360815-4360925)
chr4 (273-373)||(4320855-4320955)
chr4 (285-377)||(6772861-6772953)
chr4 (331-377)||(6545680-6545726)
[»] scaffold0294 (1 HSPs)
scaffold0294 (266-377)||(9132-9243)
[»] chr3 (4 HSPs)
chr3 (267-377)||(47987084-47987194)
chr3 (267-377)||(47996371-47996481)
chr3 (267-377)||(48005658-48005768)
chr3 (267-377)||(48014943-48015053)
[»] chr7 (2 HSPs)
chr7 (268-377)||(36214061-36214170)
chr7 (289-377)||(18935147-18935235)


Alignment Details
Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 143 - 377
Target Start/End: Original strand, 5433658 - 5433884
Alignment:
Q  143 tagaaataaatagagacaaatctaatgtaaatatattactttcaacgtttaaggttagtgatacatagtagttgcattcgtttattatttaaagcttctt 242  Q
    |||||||||||| | ||||||||||||||||| | |||||||        ||||||||||||||||||||||||| |||||||||||||||| |||| ||    
T  5433658 tagaaataaataaatacaaatctaatgtaaatgtcttacttt--------aaggttagtgatacatagtagttgctttcgtttattatttaatgcttatt 5433749  T
Q  243 ccctatgtcttctctttaatgtatatgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgact 342  Q
    ||||||||||||||||| || | | ||||||||||||| ||||||||||||||||||||||| |||||||| ||||||| |||||||||||| || ||||    
T  5433750 ccctatgtcttctcttttatttttgtgttcttgcagagaatggagaagctgaaaattcttaaccttagtcattgtcattatctgacacaaacaccagact 5433849  T
Q  343 tttcaaatttgcctaatcttgaaaagctagtactc 377  Q
    |||||||||||||||||||||||||| ||||||||    
T  5433850 tttcaaatttgcctaatcttgaaaagttagtactc 5433884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 244 - 370
Target Start/End: Original strand, 5176455 - 5176581
Alignment:
Q  244 cctatgtcttctctttaatgtatatgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgactt 343  Q
    |||| ||||||| |||||| | | ||||||||||||||||||||||||||||||||||||| |||||||| | ||||| ||||||| | ||||| |||||    
T  5176455 cctaagtcttctatttaatatttttgttcttgcagaggatggagaagctgaaaattcttaatcttagtcattctcattatctgacagagaccccagactt 5176554  T
Q  344 ttcaaatttgcctaatcttgaaaagct 370  Q
    ||||||  |||||||||||||||||||    
T  5176555 ttcaaacatgcctaatcttgaaaagct 5176581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 244 - 370
Target Start/End: Original strand, 5278282 - 5278408
Alignment:
Q  244 cctatgtcttctctttaatgtatatgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgactt 343  Q
    |||| ||||||| |||||| | | ||||||||||||||||||||||||||||||||||||| |||||||| | ||||| ||||||| | ||||| |||||    
T  5278282 cctaagtcttctatttaatatttttgttcttgcagaggatggagaagctgaaaattcttaatcttagtcattctcattatctgacagagaccccagactt 5278381  T
Q  344 ttcaaatttgcctaatcttgaaaagct 370  Q
    ||||||  |||||||||||||||||||    
T  5278382 ttcaaacatgcctaatcttgaaaagct 5278408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 267 - 377
Target Start/End: Complemental strand, 5128759 - 5128649
Alignment:
Q  267 atgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaaa 366  Q
    ||||||||||||| ||||||||||||||||||||| || | |||||| | ||||| ||||||||| ||||| ||||||||| |||| |||||||||||||    
T  5128759 atgttcttgcagatgatggagaagctgaaaattctcaatcatagtcattctcattgtctgacacacaccccagacttttcatatttacctaatcttgaaa 5128660  T
Q  367 agctagtactc 377  Q
    |||||||||||    
T  5128659 agctagtactc 5128649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 223 - 377
Target Start/End: Complemental strand, 5690544 - 5690391
Alignment:
Q  223 tttattatttaaagcttcttccctatgtcttctctttaatgtatatgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattt 322  Q
    |||||| ||| ||||||||| | || || ||||||||||| | ||| |||||| ||| |||||||||||| |||||||| || |||||||||| |||||     
T  5690544 tttattttttgaagcttcttacataagt-ttctctttaatatttatattcttgtagatgatggagaagcttaaaattctcaatcttagtcactctcatta 5690446  T
Q  323 tctgacacaaacccctgacttttcaaatttgcctaatcttgaaaagctagtactc 377  Q
    ||||||||| ||||| ||||||||||   |||||||||||||||||||| |||||    
T  5690445 tctgacacagaccccagacttttcaatcatgcctaatcttgaaaagctaatactc 5690391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 268 - 377
Target Start/End: Complemental strand, 5067035 - 5066926
Alignment:
Q  268 tgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaaaa 367  Q
    ||||||||||||||||||| |||||||||||||| || ||||| || | ||||| |||||  || ||||||||||||||| || ||||||||||||||||    
T  5067035 tgttcttgcagaggatggaaaagctgaaaattctaaatcttagccattctcattgtctgatgcacacccctgacttttcatatatgcctaatcttgaaaa 5066936  T
Q  368 gctagtactc 377  Q
    ||||||||||    
T  5066935 gctagtactc 5066926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 266 - 383
Target Start/End: Complemental strand, 5147239 - 5147122
Alignment:
Q  266 tatgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaa 365  Q
    ||||||||||||||||||||||||||| |||||||| || |||||||||| ||||| | ||||||| |||||  |||||| ||| |||||||||||||||    
T  5147239 tatgttcttgcagaggatggagaagctaaaaattctcaagcttagtcactctcattatttgacacagaccccaaactttttaaacttgcctaatcttgaa 5147140  T
Q  366 aagctagtactctttgat 383  Q
     | |||||||||| ||||    
T  5147139 caactagtactctctgat 5147122  T

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Target: chr6; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 5284732 - 5284625
Alignment:
Q  266 tatgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaa 365  Q
    |||||||||||||||||||||||||||||||||||| || |||||||| |  |||| ||| |||| || |||||||||||| ||  ||||||||||||||    
T  5284732 tatgttcttgcagaggatggagaagctgaaaattctcaatcttagtcattcccattatctcacacgaagccctgacttttcgaacatgcctaatcttgaa 5284633  T
Q  366 aagctagt 373  Q
    ||||||||    
T  5284632 aagctagt 5284625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 268 - 377
Target Start/End: Complemental strand, 5102955 - 5102846
Alignment:
Q  268 tgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaaaa 367  Q
    |||||||||||||| |||| |||||||||||||| || |||||||| | ||||| |||||| || ||||||||||||||| | |||||||||||||| ||    
T  5102955 tgttcttgcagaggttggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacacccctgacttttcatacttgcctaatcttgagaa 5102856  T
Q  368 gctagtactc 377  Q
    ||| ||||||    
T  5102855 gctggtactc 5102846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 252 - 377
Target Start/End: Complemental strand, 5354971 - 5354846
Alignment:
Q  252 ttctctttaatgtatatgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatt 351  Q
    ||||||||||| | ||||||||||||||| |||||| | ||||||||||| || |||||||| |  |||| ||||||||| ||||||||||||||  |      
T  5354971 ttctctttaatatgtatgttcttgcagagaatggagcatctgaaaattctcaatcttagtcattcacattgtctgacacatacccctgacttttcttaca 5354872  T
Q  352 tgcctaatcttgaaaagctagtactc 377  Q
    ||||||||||||||||||| ||||||    
T  5354871 tgcctaatcttgaaaagcttgtactc 5354846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 266 - 374
Target Start/End: Original strand, 5396688 - 5396796
Alignment:
Q  266 tatgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaa 365  Q
    |||||||||||||||| ||||||||||||||||||| || |||||||| | ||||| | ||||||| ||||| |||||||||||  ||||||||||||||    
T  5396688 tatgttcttgcagaggctggagaagctgaaaattctcaatcttagtcattctcattatttgacacagaccccagacttttcaaacatgcctaatcttgaa 5396787  T
Q  366 aagctagta 374  Q
     | ||||||    
T  5396788 caactagta 5396796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 268 - 377
Target Start/End: Complemental strand, 5182268 - 5182159
Alignment:
Q  268 tgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaaaa 367  Q
    |||||||||||||| ||||||||||||||||||| || |||||||| | |||||||||| || | || || ||||||||||| |||||||| |||||| |    
T  5182268 tgttcttgcagaggctggagaagctgaaaattctcaatcttagtcattctcattttctgtcaaagactccagacttttcaaacttgcctaaccttgaaca 5182169  T
Q  368 gctagtactc 377  Q
    | ||||||||    
T  5182168 gttagtactc 5182159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 268 - 376
Target Start/End: Original strand, 5096448 - 5096556
Alignment:
Q  268 tgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaaaa 367  Q
    ||||||||||||||||||| || ||||||||||| || |||||||| | ||||| ||||||||| ||||| ||||||||| |  ||||||||||||| ||    
T  5096448 tgttcttgcagaggatggaaaaactgaaaattctaaatcttagtcattctcattgtctgacacacaccccagacttttcatacatgcctaatcttgagaa 5096547  T
Q  368 gctagtact 376  Q
    ||| |||||    
T  5096548 gctggtact 5096556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 377
Target Start/End: Complemental strand, 5257677 - 5257566
Alignment:
Q  266 tatgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaa 365  Q
    |||||||||||||||||||||||||||||||||||| || |||||||| |  | || ||| |||  || |||||||||||| ||  ||||||||||||||    
T  5257677 tatgttcttgcagaggatggagaagctgaaaattctcaatcttagtcattcccgttgtctcacaagaagccctgacttttccaacatgcctaatcttgaa 5257578  T
Q  366 aagctagtactc 377  Q
    ||| ||||||||    
T  5257577 aagttagtactc 5257566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 377
Target Start/End: Original strand, 5344599 - 5344710
Alignment:
Q  266 tatgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaa 365  Q
    ||||||||| |||| ||||||||||||||||||||| || |||||||| | |||||  |||| ||||||||| ||||||||  | || ||||||||||||    
T  5344599 tatgttcttacagatgatggagaagctgaaaattctcaatcttagtcattctcattacctgatacaaaccccggacttttcttacttacctaatcttgaa 5344698  T
Q  366 aagctagtactc 377  Q
    ||| ||||||||    
T  5344699 aagttagtactc 5344710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 377
Target Start/End: Original strand, 5383064 - 5383175
Alignment:
Q  266 tatgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaa 365  Q
    |||||||||||||||||||||||  |||||||| || || |||||||| | |||||  |||   || ||||| ||||| |||||||||||||||||||||    
T  5383064 tatgttcttgcagaggatggagatactgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcctaatcttgaa 5383163  T
Q  366 aagctagtactc 377  Q
    ||||||||||||    
T  5383164 aagctagtactc 5383175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 268 - 377
Target Start/End: Original strand, 5370311 - 5370420
Alignment:
Q  268 tgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaaaa 367  Q
    |||||||||||| |||||| ||||| |||||||| || |||||||| | ||||| |||||| || ||||| ||||||||| | |||||||| ||||||||    
T  5370311 tgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaa 5370410  T
Q  368 gctagtactc 377  Q
    | ||||||||    
T  5370411 gttagtactc 5370420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 276 - 377
Target Start/End: Complemental strand, 5074241 - 5074140
Alignment:
Q  276 cagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaaaagctagtac 375  Q
    |||||| |||||||||||||||| || || |||||||| | ||||| |||||| ||||| || || |||||||| ||||||||||||||| | |||||||    
T  5074241 cagaggttggagaagctgaaaatactcaatcttagtcattctcattatctgacgcaaactccagatttttcaaacttgcctaatcttgaacaactagtac 5074142  T
Q  376 tc 377  Q
    ||    
T  5074141 tc 5074140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 377
Target Start/End: Complemental strand, 5157969 - 5157860
Alignment:
Q  268 tgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaaaa 367  Q
    |||||||||||| |||||| ||||| |||||||| || |||||||| | ||||| |||||| || ||||| ||||||||| |  ||||||||||||| ||    
T  5157969 tgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaa 5157870  T
Q  368 gctagtactc 377  Q
    ||| ||||||    
T  5157869 gctggtactc 5157860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 377
Target Start/End: Original strand, 5446897 - 5447006
Alignment:
Q  268 tgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaaaa 367  Q
    ||||||||||||||||||||||||| |||||||| || ||||| || |  || | ||| ||||||| |||||||||||||||   |||||||||| ||||    
T  5446897 tgttcttgcagaggatggagaagctaaaaattctcaatcttagccattcgcactatctcacacaaagccctgacttttcaaacacgcctaatcttcaaaa 5446996  T
Q  368 gctagtactc 377  Q
     |||||||||    
T  5446997 actagtactc 5447006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 377
Target Start/End: Original strand, 5447327 - 5447436
Alignment:
Q  268 tgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaaaa 367  Q
    ||||||||||||||||||| || ||||||| ||| || |||||||| | ||||  ||||||| | | ||| |||||||||   |||||||||||||||||    
T  5447327 tgttcttgcagaggatggaaaatctgaaaaatctcaatcttagtcattctcatcgtctgacaaacatcccggacttttcatgcttgcctaatcttgaaaa 5447426  T
Q  368 gctagtactc 377  Q
    ||||||||||    
T  5447427 gctagtactc 5447436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 280 - 377
Target Start/End: Original strand, 5350148 - 5350243
Alignment:
Q  280 ggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaaaagctagtactc 377  Q
    ||||||| |||||||||||||| || |||||||| | |  || ||||||||| ||||  ||||||||| |  ||||||||||||||||||||||||||    
T  5350148 ggatggaaaagctgaaaattctaaatcttagtcattcttgttgtctgacacacaccc--gacttttcatacatgcctaatcttgaaaagctagtactc 5350243  T

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Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 268 - 370
Target Start/End: Original strand, 5425650 - 5425752
Alignment:
Q  268 tgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaaaa 367  Q
    |||| |||||| ||||||| |||||||||||||| || |||||||| | ||||| |||||| |  |||||||||||| ||    ||||||||||||||||    
T  5425650 tgtttttgcagtggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcgcacccctgactttacattcatgcctaatcttgaaaa 5425749  T
Q  368 gct 370  Q
    |||    
T  5425750 gct 5425752  T

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Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 377
Target Start/End: Complemental strand, 5244208 - 5244099
Alignment:
Q  268 tgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaaaa 367  Q
    ||||||||  || |||||| ||||| |||||||| || |||||||| | ||||| |||||| || ||||| ||||||||| |  || | |||||||||||    
T  5244208 tgttcttgtggatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgtcaaatcttgaaaa 5244109  T
Q  368 gctagtactc 377  Q
    ||||||||||    
T  5244108 gctagtactc 5244099  T

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Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5444507 - 5444543
Alignment:
Q  1 gactaatttgctagtaagcgatataatttaaggacta 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  5444507 gactaatttgctagtaagcgatataatttaaggacta 5444543  T

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Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 266 - 377
Target Start/End: Original strand, 8877347 - 8877458
Alignment:
Q  266 tatgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaa 365  Q
    ||||||||||||||||||||||||||| |||||||| || ||||| |||| ||||  |||||||||||| || ||||||| ||| |||||||||||||||    
T  8877347 tatgttcttgcagaggatggagaagctaaaaattctcaatcttagccactctcatcatctgacacaaactccagactttttaaacttgcctaatcttgaa 8877446  T
Q  366 aagctagtactc 377  Q
    ||||||||||||    
T  8877447 aagctagtactc 8877458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 268 - 377
Target Start/End: Complemental strand, 4124280 - 4124171
Alignment:
Q  268 tgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaaaa 367  Q
    ||||||||||||| |||||| ||||||||||||| || |||||||| | ||||| ||||||||| ||||||||||||||| | |||||||| ||||||||    
T  4124280 tgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgacacagacccctgacttttcatacttgcctaaccttgaaaa 4124181  T
Q  368 gctagtactc 377  Q
    ||| ||||||    
T  4124180 gctggtactc 4124171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 269 - 377
Target Start/End: Original strand, 4344387 - 4344495
Alignment:
Q  269 gttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaaaag 368  Q
    ||||||||||||||||||  ||||||||||||| || || ||||| | ||||| ||||||||| || |||||||||||| | ||||||||||||||||||    
T  4344387 gttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattgtctgacacagacgcctgacttttcatacttgcctaatcttgaaaag 4344486  T
Q  369 ctagtactc 377  Q
    |||||||||    
T  4344487 ctagtactc 4344495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 270 - 377
Target Start/End: Original strand, 4335087 - 4335194
Alignment:
Q  270 ttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaaaagc 369  Q
    |||||||||||||||||| || |||||||||| || |||||||| | ||||| ||| ||||| |||||||| |||||| | ||||||||||||||||| |    
T  4335087 ttcttgcagaggatggagcagttgaaaattctcaatcttagtcattctcattatctaacacagacccctgatttttcatacttgcctaatcttgaaaacc 4335186  T
Q  370 tagtactc 377  Q
    ||||||||    
T  4335187 tagtactc 4335194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 266 - 376
Target Start/End: Original strand, 4360815 - 4360925
Alignment:
Q  266 tatgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaa 365  Q
    |||||| || ||| |||||||| ||||||||||||| || |||||||| | ||| | ||||||||| || |||||||||||| | |||||||||||||||    
T  4360815 tatgttatttcaggggatggagcagctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaa 4360914  T
Q  366 aagctagtact 376  Q
    |||||||||||    
T  4360915 aagctagtact 4360925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 273 - 373
Target Start/End: Complemental strand, 4320955 - 4320855
Alignment:
Q  273 ttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaaaagctag 372  Q
    ||||||||||||||| ||||||| ||||| || |||||||| | ||||  | ||||||| ||||||||||||||| | ||||||||||||||||||||||    
T  4320955 ttgcagaggatggagcagctgaagattctaaatcttagtcattctcatcatttgacacagacccctgacttttcatacttgcctaatcttgaaaagctag 4320856  T
Q  373 t 373  Q
    |    
T  4320855 t 4320855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 377
Target Start/End: Original strand, 6772861 - 6772953
Alignment:
Q  285 gagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaaaagctagtactc 377  Q
    ||||| || ||||||||||| |||||||| |  |||  | ||||  ||||||| ||||||||| | ||||| |||||||||||||||||||||    
T  6772861 gagaatctaaaaattcttaatcttagtcattcccatgatttgaccgaaaccccagacttttcatacttgccgaatcttgaaaagctagtactc 6772953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 377
Target Start/End: Complemental strand, 6545726 - 6545680
Alignment:
Q  331 aaacccctgacttttcaaatttgcctaatcttgaaaagctagtactc 377  Q
    ||||||| ||||||||| || ||||||||||||||||| ||||||||    
T  6545726 aaaccccagacttttcatatatgcctaatcttgaaaagatagtactc 6545680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 266 - 377
Target Start/End: Complemental strand, 9243 - 9132
Alignment:
Q  266 tatgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaa 365  Q
    |||| ||||||||||| ||| ||||||||||||||| || |||||||| | ||||| | |||  || ||||| ||||||||| |||||||||||||||||    
T  9243 tatggtcttgcagaggctggcgaagctgaaaattctcaatcttagtcattctcattatttgatgcataccccagacttttcatatttgcctaatcttgaa 9144  T
Q  366 aagctagtactc 377  Q
    ||||||||||||    
T  9143 aagctagtactc 9132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 267 - 377
Target Start/End: Complemental strand, 47987194 - 47987084
Alignment:
Q  267 atgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaaa 366  Q
    ||||||||||||| |||||| ||||| |||||||| || |||||||| | ||||| ||| |||| || || ||||||||||||  |||||||||| ||||    
T  47987194 atgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagccttgacttttcaaacatgcctaatctcgaaa 47987095  T
Q  367 agctagtactc 377  Q
    |||||||||||    
T  47987094 agctagtactc 47987084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 267 - 377
Target Start/End: Complemental strand, 47996481 - 47996371
Alignment:
Q  267 atgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaaa 366  Q
    ||||||||||||| |||||| ||||| |||||||| || |||||||| | ||||| ||| |||| || || ||||||||||||  |||||||||| ||||    
T  47996481 atgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagccttgacttttcaaacatgcctaatctcgaaa 47996382  T
Q  367 agctagtactc 377  Q
    |||||||||||    
T  47996381 agctagtactc 47996371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 267 - 377
Target Start/End: Complemental strand, 48005768 - 48005658
Alignment:
Q  267 atgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaaa 366  Q
    ||||||||||||| |||||| ||||| |||||||| || |||||||| | ||||| ||| |||| || || ||||||||||||  |||||||||| ||||    
T  48005768 atgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagccttgacttttcaaacatgcctaatctcgaaa 48005669  T
Q  367 agctagtactc 377  Q
    |||||||||||    
T  48005668 agctagtactc 48005658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 267 - 377
Target Start/End: Complemental strand, 48015053 - 48014943
Alignment:
Q  267 atgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaaa 366  Q
    ||||||||||||| |||||| ||||| |||||||| || |||||||| | ||||| ||| |||| || || ||||||||||||  |||||||||| ||||    
T  48015053 atgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagccttgacttttcaaacatgcctaatctcgaaa 48014954  T
Q  367 agctagtactc 377  Q
    |||||||||||    
T  48014953 agctagtactc 48014943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 377
Target Start/End: Complemental strand, 36214170 - 36214061
Alignment:
Q  268 tgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaaaa 367  Q
    |||||||||||||| |||| |||||||||||||| || |||||||| | ||||| ||||||| | || || || ||||||||  ||||||| ||||||||    
T  36214170 tgttcttgcagaggctggaaaagctgaaaattctcaatcttagtcattctcattatctgacaaagactccagatttttcaaacatgcctaaccttgaaaa 36214071  T
Q  368 gctagtactc 377  Q
     |||||||||    
T  36214070 actagtactc 36214061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 377
Target Start/End: Original strand, 18935147 - 18935235
Alignment:
Q  289 agctgaaaattcttaaacttagtcactgtcattttctgacacaaacccctgacttttcaaatttgcctaatcttgaaaagctagtactc 377  Q
    |||||||  ||||||| |||||||| | ||||   |||| |||||||||  |||||||||| ||||| |||||||||||| || |||||    
T  18935147 agctgaagtttcttaatcttagtcattctcataacctgagacaaaccccgaacttttcaaacttgccgaatcttgaaaagttaatactc 18935235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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