View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19602_high_18 (Length: 363)
Name: NF19602_high_18
Description: NF19602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19602_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 266
Target Start/End: Complemental strand, 16951210 - 16950960
Alignment:
| Q |
16 |
gaagaaatcggaatgcttaaccattaagaagaaaccacaaagcatgcatgcttaaccacttaacaaaagctatcatcaacaaagccatagagccaaaacc |
115 |
Q |
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| T |
16951210 |
gaagaaatcggaatgcttaaccattaagaagaaaccacaaagcatgcatgcttaaccacttaacaaaagctatcatcaacaaagccatagagccaaaacc |
16951111 |
T |
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| Q |
116 |
accataggggaagaattgcaaagaggctgaagaaatgcttaaccaccgttgaggagaaggcttcatcctttagtaaagcattcatcaaaacattttgatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16951110 |
accataggggaagaattgcaaagaggctgaagaaatgcttaaccaccgttgaggagaaggcttcatcctttagtaaagcattcatcaaaacattttgatg |
16951011 |
T |
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| Q |
216 |
acattgccatttgtgagcttcaatggttactttttctactagcttacgcca |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16951010 |
acattgccatttgtgagcttcaatggttactttttctactagcttacgcca |
16950960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 266
Target Start/End: Complemental strand, 17021875 - 17021625
Alignment:
| Q |
16 |
gaagaaatcggaatgcttaaccattaagaagaaaccacaaagcatgcatgcttaaccacttaacaaaagctatcatcaacaaagccatagagccaaaacc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17021875 |
gaagaaatcggaatgcttaaccattaagaagaaaccacaaagcatgcatgcttaaccacttaacaaaagctatcatcaacaaagccatagagccaaaacc |
17021776 |
T |
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| Q |
116 |
accataggggaagaattgcaaagaggctgaagaaatgcttaaccaccgttgaggagaaggcttcatcctttagtaaagcattcatcaaaacattttgatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17021775 |
accataggggaagaattgcaaagaggctgaagaaatgcttaaccaccgttgaggagaaggcttcatcctttagtaaagcattcatcaaaacattttgatg |
17021676 |
T |
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| Q |
216 |
acattgccatttgtgagcttcaatggttactttttctactagcttacgcca |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17021675 |
acattgccatttgtgagcttcaatggttactttttctactagcttacgcca |
17021625 |
T |
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